Wall clock time and date at job start Tue Mar 31 2020 03:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.08994 * 109.46850 * 305.00126 * 3 2 1 5 5 C 1.53002 * 109.46909 * 64.99592 * 3 2 1 6 6 C 1.50692 * 109.47133 * 184.99644 * 3 2 1 7 7 O 1.21279 * 120.00110 * 343.47608 * 6 3 2 8 8 N 1.34982 * 120.00010 * 163.74590 * 6 3 2 9 9 C 1.44689 * 120.08167 * 185.17836 * 8 6 3 10 10 C 1.51293 * 113.54960 * 267.43133 * 9 8 6 11 11 C 1.51098 * 114.59102 * 297.34105 * 10 9 8 12 12 H 1.09745 * 110.73946 * 177.50774 * 11 10 9 13 13 C 1.54164 * 108.53417 * 299.42383 * 11 10 9 14 14 C 1.54013 * 104.65393 * 91.77870 * 13 11 10 15 15 C 1.52099 * 105.50528 * 12.91351 * 14 13 11 16 16 H 1.09332 * 108.38505 * 122.06268 * 15 14 13 17 17 C 1.49325 * 119.97245 * 4.73353 * 8 6 3 18 18 N 1.47776 * 109.55775 * 4.08090 * 15 14 13 19 19 C 1.37123 * 127.12088 * 159.46285 * 18 15 14 20 20 H 1.08001 * 119.99869 * 166.53977 * 19 18 15 21 21 C 1.38807 * 120.00328 * 346.53985 * 19 18 15 22 22 N 1.31622 * 120.00131 * 4.19226 * 21 19 18 23 23 Si 1.86798 * 120.00280 * 184.19031 * 21 19 18 24 24 H 1.48506 * 109.47030 * 90.00029 * 23 21 19 25 25 H 1.48502 * 109.47347 * 209.99988 * 23 21 19 26 26 H 1.48503 * 109.47113 * 330.00292 * 23 21 19 27 27 H 1.09007 * 109.46879 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47406 * 299.99766 * 1 2 3 29 29 H 1.08997 * 109.47173 * 60.00179 * 1 2 3 30 30 H 1.08997 * 109.47406 * 240.00234 * 2 1 3 31 31 H 1.09005 * 109.47031 * 119.99570 * 2 1 3 32 32 H 1.09000 * 109.47646 * 305.12723 * 5 3 2 33 33 H 1.09001 * 109.46995 * 65.13132 * 5 3 2 34 34 H 1.09007 * 109.46749 * 185.12729 * 5 3 2 35 35 H 1.09445 * 108.33710 * 28.01937 * 9 8 6 36 36 H 1.08979 * 109.13680 * 145.26870 * 9 8 6 37 37 H 1.09251 * 108.80853 * 59.26888 * 10 9 8 38 38 H 1.09422 * 108.41523 * 176.08863 * 10 9 8 39 39 H 1.09340 * 110.58981 * 210.79557 * 13 11 10 40 40 H 1.09273 * 110.69940 * 332.58713 * 13 11 10 41 41 H 1.09059 * 110.63350 * 253.34993 * 14 13 11 42 42 H 1.09272 * 110.27743 * 131.83795 * 14 13 11 43 43 H 1.09084 * 109.54604 * 254.71411 * 17 8 6 44 44 H 1.09088 * 109.56047 * 14.57921 * 17 8 6 45 45 H 0.96994 * 120.00184 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5418 1.4444 -0.1237 7 8 4.1696 0.4300 0.0948 8 7 4.1889 2.5765 -0.4725 9 6 5.6175 2.5543 -0.7011 10 6 6.4317 2.8930 0.5282 11 6 6.2080 4.2872 1.0660 12 1 6.7939 4.4500 1.9796 13 6 6.5999 5.3024 -0.0259 14 6 5.2930 5.5712 -0.7952 15 6 4.1861 4.9815 0.0652 16 1 3.4747 5.7765 0.3045 17 6 3.4282 3.8515 -0.6324 18 7 4.7590 4.4754 1.3299 19 6 4.0919 4.2381 2.5042 20 1 4.5668 3.6688 3.2895 21 6 2.8062 4.7295 2.6835 22 7 2.1959 5.3519 1.6973 23 14 1.9419 4.5077 4.3246 24 1 2.2405 5.6679 5.2022 25 1 0.4760 4.4182 4.1040 26 1 2.4220 3.2606 4.9723 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 0.5564 2.0451 1.4412 33 1 2.1424 1.6435 2.1424 34 1 1.9181 3.1786 1.2697 35 1 5.8969 1.5507 -1.0368 36 1 5.8625 3.2548 -1.4991 37 1 6.1982 2.1719 1.3150 38 1 7.4921 2.7834 0.2815 39 1 6.9762 6.2251 0.4241 40 1 7.3579 4.8812 -0.6908 41 1 5.3161 5.0882 -1.7727 42 1 5.1410 6.6462 -0.9195 43 1 3.3221 4.0826 -1.6932 44 1 2.4385 3.7447 -0.1864 45 1 1.2976 5.6956 1.8227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045716874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:13 Heat of formation + Delta-G solvation = -24.072076 kcal Electronic energy + Delta-G solvation = -25031.176137 eV Core-core repulsion = 21855.609657 eV Total energy + Delta-G solvation = -3175.566480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46648 -39.62194 -36.49124 -35.57576 -34.81050 -33.28662 -31.18713 -30.65609 -28.65218 -27.24468 -26.04127 -25.62780 -23.85379 -21.97383 -21.17178 -20.64874 -19.43827 -18.67308 -17.86345 -16.81697 -16.69348 -16.32658 -16.06871 -15.86444 -15.57328 -14.87736 -14.57432 -14.19113 -14.12907 -13.91327 -13.53119 -13.33838 -13.17713 -13.11802 -12.86432 -12.80090 -12.65091 -12.51683 -12.43325 -12.35916 -12.19873 -11.97269 -11.66512 -11.60121 -11.46959 -11.34633 -11.03572 -10.86882 -10.60369 -10.29981 -9.32431 -8.66535 -7.66118 -5.07842 1.43465 1.48819 1.52259 1.78948 2.38149 2.52749 3.39753 3.59089 3.78264 3.92838 4.02538 4.08711 4.20847 4.22049 4.33615 4.42936 4.47455 4.53415 4.57034 4.63384 4.70010 4.74492 4.82107 4.91729 4.94040 4.99059 5.07745 5.08101 5.12905 5.17800 5.23147 5.27416 5.30583 5.38155 5.43844 5.53975 5.64008 5.76785 5.83688 5.93262 6.04016 6.47047 6.67903 7.25962 7.41836 7.87327 8.61688 9.31603 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.010788 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.630162 B = 2594.887907 C = 3931.894931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.097 4.097 4 H 0.099 0.901 5 C -0.164 4.164 6 C 0.513 3.487 7 O -0.603 6.603 8 N -0.581 5.581 9 C 0.130 3.870 10 C -0.134 4.134 11 C 0.144 3.856 12 H 0.042 0.958 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.135 3.865 16 H 0.097 0.903 17 C 0.102 3.898 18 N -0.593 5.593 19 C -0.208 4.208 20 H 0.048 0.952 21 C -0.020 4.020 22 N -0.918 5.918 23 Si 0.927 3.073 24 H -0.293 1.293 25 H -0.283 1.283 26 H -0.293 1.293 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.019 0.981 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.011 0.989 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.137 -1.189 -8.698 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C -0.118 4.118 4 H 0.117 0.883 5 C -0.221 4.221 6 C 0.303 3.697 7 O -0.487 6.487 8 N -0.311 5.311 9 C 0.006 3.994 10 C -0.174 4.174 11 C 0.037 3.963 12 H 0.060 0.940 13 C -0.152 4.152 14 C -0.159 4.159 15 C 0.028 3.972 16 H 0.114 0.886 17 C -0.020 4.020 18 N -0.316 5.316 19 C -0.338 4.338 20 H 0.066 0.934 21 C -0.214 4.214 22 N -0.568 5.568 23 Si 0.758 3.242 24 H -0.221 1.221 25 H -0.209 1.209 26 H -0.219 1.219 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.262 -1.632 -8.457 8.705 hybrid contribution -0.390 -0.359 1.607 1.692 sum 0.873 -1.991 -6.851 7.187 Atomic orbital electron populations 1.21791 0.93458 1.02519 1.02422 1.21296 0.97080 0.93798 1.01551 1.21228 0.90819 0.99074 1.00651 0.88253 1.22262 1.00688 1.05038 0.94097 1.21095 0.91155 0.82565 0.74907 1.90543 1.70145 1.35009 1.52958 1.48083 1.07838 1.08968 1.66169 1.20521 0.80500 1.01125 0.97258 1.21800 0.99722 0.98424 0.97470 1.21235 0.86104 0.93042 0.95882 0.93957 1.22411 0.97431 0.98464 0.96923 1.22126 0.94678 1.00734 0.98329 1.21462 0.95363 0.95587 0.84773 0.88557 1.23173 0.97078 0.82991 0.98808 1.44920 1.02364 1.76355 1.07916 1.18882 0.97374 1.25794 0.91722 0.93408 1.24866 0.97502 1.00568 0.98468 1.69682 1.13680 1.43877 1.29569 0.85894 0.78706 0.76873 0.82741 1.22095 1.20905 1.21926 0.91224 0.92769 0.91441 0.92104 0.93663 0.91571 0.96126 0.86804 0.92829 0.89018 0.96961 0.89917 0.92054 0.89168 0.90398 0.91503 0.91779 0.89364 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.67 71.98 0.70 -2.97 16 2 C -0.10 -3.24 4.74 30.60 0.15 -3.09 16 3 C -0.10 -3.56 1.87 -11.54 -0.02 -3.58 16 4 H 0.10 3.27 7.39 -2.39 -0.02 3.25 16 5 C -0.16 -6.70 8.61 71.98 0.62 -6.08 16 6 C 0.51 21.84 6.88 87.62 0.60 22.44 16 7 O -0.60 -29.19 15.66 -3.03 -0.05 -29.24 16 8 N -0.58 -22.72 2.55 -821.25 -2.09 -24.81 16 9 C 0.13 4.55 4.95 86.16 0.43 4.98 16 10 C -0.13 -4.88 5.02 29.42 0.15 -4.73 16 11 C 0.14 5.49 3.80 44.38 0.17 5.66 16 12 H 0.04 1.70 8.20 -1.99 -0.02 1.68 16 13 C -0.11 -3.36 6.03 31.33 0.19 -3.17 16 14 C -0.12 -3.69 5.73 30.64 0.18 -3.51 16 15 C 0.13 5.37 2.31 44.42 0.10 5.47 16 16 H 0.10 4.48 5.61 -2.21 -0.01 4.47 16 17 C 0.10 3.85 5.32 85.80 0.46 4.31 16 18 N -0.59 -26.86 2.34 -647.97 -1.52 -28.38 16 19 C -0.21 -10.81 10.17 84.00 0.85 -9.95 16 20 H 0.05 2.65 7.83 -2.91 -0.02 2.63 16 21 C -0.02 -1.02 3.58 84.86 0.30 -0.71 16 22 N -0.92 -45.32 8.29 21.65 0.18 -45.14 16 23 Si 0.93 43.21 29.56 68.60 2.03 45.23 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.05 1.42 6.46 -2.39 -0.02 1.40 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.65 8.08 -2.38 -0.02 1.63 16 32 H 0.07 2.40 6.34 -2.39 -0.02 2.39 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 5.11 2.22 -2.38 -0.01 5.10 16 35 H 0.05 1.95 7.37 -2.15 -0.02 1.94 16 36 H 0.09 2.66 5.74 -2.40 -0.01 2.64 16 37 H 0.01 0.52 8.16 -2.25 -0.02 0.50 16 38 H 0.08 2.45 8.13 -2.16 -0.02 2.43 16 39 H 0.06 1.77 8.17 -2.21 -0.02 1.75 16 40 H 0.09 2.12 7.77 -2.24 -0.02 2.10 16 41 H 0.08 2.02 6.44 -2.36 -0.02 2.01 16 42 H 0.07 1.94 8.16 -2.24 -0.02 1.92 16 43 H 0.06 2.04 7.87 -2.34 -0.02 2.02 16 44 H 0.09 3.65 3.46 -2.34 -0.01 3.64 16 45 H 0.25 12.27 8.31 -92.71 -0.77 11.50 16 Total: -1.00 -59.57 322.69 4.40 -55.16 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.99 Total: 22.13 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 4.87 Total: 5.05 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -3.43 Total: -98.33 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -59.57 4.40 -55.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045716874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.091 kcal (2) G-P(sol) polarization free energy of solvation -59.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds