Wall clock time and date at job start Tue Mar 31 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47363 * 2 1 4 4 H 1.08999 * 109.47256 * 54.99936 * 3 2 1 5 5 C 1.53000 * 109.47151 * 295.00472 * 3 2 1 6 6 C 1.50700 * 109.47463 * 175.00142 * 3 2 1 7 7 O 1.21280 * 119.99863 * 24.18244 * 6 3 2 8 8 N 1.34779 * 119.99724 * 204.18085 * 6 3 2 9 9 C 1.44793 * 120.17588 * 174.90042 * 8 6 3 10 10 C 1.52350 * 111.74781 * 265.09922 * 9 8 6 11 11 C 1.51310 * 112.41428 * 284.34475 * 10 9 8 12 12 H 1.09001 * 111.31361 * 186.29591 * 11 10 9 13 13 C 1.54726 * 107.22407 * 308.33328 * 11 10 9 14 14 C 1.54233 * 104.37087 * 89.47164 * 13 11 10 15 15 C 1.51125 * 105.27916 * 11.32792 * 14 13 11 16 16 H 1.09004 * 106.47867 * 122.81758 * 15 14 13 17 17 C 1.49812 * 120.18743 * 354.88548 * 8 6 3 18 18 N 1.48064 * 109.76777 * 8.25923 * 15 14 13 19 19 C 1.36935 * 127.84118 * 155.03041 * 18 15 14 20 20 H 1.07999 * 119.99945 * 173.33990 * 19 18 15 21 21 C 1.38817 * 119.99997 * 353.34718 * 19 18 15 22 22 N 1.31610 * 120.00104 * 6.90371 * 21 19 18 23 23 Si 1.86800 * 119.99705 * 186.62412 * 21 19 18 24 24 H 1.48508 * 109.46715 * 84.96528 * 23 21 19 25 25 H 1.48496 * 109.47271 * 204.96219 * 23 21 19 26 26 H 1.48503 * 109.47313 * 324.96910 * 23 21 19 27 27 H 1.08996 * 109.47245 * 59.99749 * 1 2 3 28 28 H 1.08998 * 109.47400 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47160 * 299.99918 * 1 2 3 30 30 H 1.09001 * 109.47160 * 240.00082 * 2 1 3 31 31 H 1.09003 * 109.47397 * 119.99580 * 2 1 3 32 32 H 1.09001 * 109.47516 * 67.39570 * 5 3 2 33 33 H 1.08996 * 109.47479 * 187.40481 * 5 3 2 34 34 H 1.09003 * 109.46766 * 307.40268 * 5 3 2 35 35 H 1.09003 * 108.93280 * 25.24424 * 9 8 6 36 36 H 1.09004 * 108.92835 * 143.91613 * 9 8 6 37 37 H 1.08996 * 108.31528 * 164.18381 * 10 9 8 38 38 H 1.09006 * 109.99188 * 45.64774 * 10 9 8 39 39 H 1.09004 * 110.44952 * 208.19495 * 13 11 10 40 40 H 1.08997 * 110.44790 * 330.62345 * 13 11 10 41 41 H 1.08996 * 110.28099 * 130.51760 * 14 13 11 42 42 H 1.09000 * 110.27885 * 252.61026 * 14 13 11 43 43 H 1.09009 * 109.54185 * 30.85216 * 17 8 6 44 44 H 1.08997 * 109.54566 * 270.58462 * 17 8 6 45 45 H 0.97002 * 120.00081 * 179.72660 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1804 0.4748 -0.2272 8 7 4.1754 2.5234 0.6245 9 6 5.6056 2.4890 0.8482 10 6 5.9433 2.1092 2.2844 11 6 5.7098 3.2483 3.2526 12 1 6.0596 2.9956 4.2535 13 6 6.4510 4.4854 2.6919 14 6 5.4117 5.1759 1.7853 15 6 4.0988 4.4939 2.0934 16 1 3.4104 5.2772 2.4108 17 6 3.4040 3.7651 0.9524 18 7 4.2636 3.5923 3.2563 19 6 3.3011 3.1672 4.1326 20 1 3.5397 2.4217 4.8767 21 6 2.0187 3.6943 4.0645 22 7 1.6896 4.4989 3.0764 23 14 0.7579 3.2553 5.3711 24 1 0.9163 4.1625 6.5362 25 1 -0.6089 3.4043 4.8100 26 1 0.9642 1.8505 5.8060 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5518 2.2432 -1.3361 33 1 2.1078 3.1070 -1.3659 34 1 1.9575 1.5168 -2.1514 35 1 6.0508 1.7537 0.1779 36 1 6.0224 3.4706 0.6227 37 1 6.9948 1.8250 2.3254 38 1 5.3404 1.2561 2.5959 39 1 6.7506 5.1497 3.5025 40 1 7.3207 4.1775 2.1116 41 1 5.3534 6.2389 2.0191 42 1 5.6709 5.0327 0.7363 43 1 2.3915 3.4963 1.2541 44 1 3.3650 4.4122 0.0762 45 1 0.7923 4.8641 3.0266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045716877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:17 Heat of formation + Delta-G solvation = -8.944810 kcal Electronic energy + Delta-G solvation = -24673.838143 eV Core-core repulsion = 21498.927630 eV Total energy + Delta-G solvation = -3174.910513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.98098 -38.24782 -34.99470 -33.93334 -33.11817 -31.51291 -29.63396 -29.35560 -27.10849 -25.91949 -24.73817 -23.85771 -22.38510 -20.62459 -19.58009 -19.09424 -17.98499 -17.04711 -16.17654 -15.32491 -15.05211 -14.89729 -14.69230 -14.06248 -13.82658 -13.66360 -13.05008 -12.79604 -12.55976 -12.29024 -12.21188 -11.86112 -11.81704 -11.52069 -11.33264 -11.26337 -11.13415 -11.04332 -10.88220 -10.87751 -10.77673 -10.37943 -10.33499 -10.21360 -9.90110 -9.66403 -9.57967 -9.36835 -8.94390 -8.60666 -7.71209 -6.94458 -5.79129 -3.14721 3.34705 3.38427 3.41299 3.41895 3.87912 4.40965 5.06932 5.18897 5.28237 5.31463 5.35214 5.50290 5.61169 5.65500 5.69393 5.74601 5.78816 5.81289 5.92763 6.00133 6.04785 6.20018 6.20451 6.23604 6.25876 6.28640 6.32094 6.36226 6.45098 6.52375 6.62666 6.64838 6.69756 6.72785 6.82721 6.87801 7.08537 7.35849 7.42442 7.60709 7.70584 8.20541 8.26854 8.98503 9.10687 9.69912 10.44933 11.27876 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.010122 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.092932 B = 2765.657162 C = 4195.700110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.113 4.113 4 H 0.105 0.895 5 C -0.135 4.135 6 C 0.520 3.480 7 O -0.574 6.574 8 N -0.591 5.591 9 C 0.114 3.886 10 C -0.144 4.144 11 C 0.149 3.851 12 H 0.060 0.940 13 C -0.129 4.129 14 C -0.122 4.122 15 C 0.135 3.865 16 H 0.108 0.892 17 C 0.117 3.883 18 N -0.580 5.580 19 C -0.202 4.202 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.924 5.924 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.284 1.284 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.118 0.882 44 H 0.034 0.966 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -0.357 -5.889 6.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.139 4.139 3 C -0.134 4.134 4 H 0.123 0.877 5 C -0.193 4.193 6 C 0.308 3.692 7 O -0.455 6.455 8 N -0.322 5.322 9 C -0.009 4.009 10 C -0.185 4.185 11 C 0.042 3.958 12 H 0.078 0.922 13 C -0.168 4.168 14 C -0.161 4.161 15 C 0.028 3.972 16 H 0.126 0.874 17 C -0.005 4.005 18 N -0.302 5.302 19 C -0.330 4.330 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.574 5.574 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.210 1.210 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.136 0.864 44 H 0.053 0.947 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.583 -0.802 -5.952 6.538 hybrid contribution -0.674 -0.208 0.759 1.036 sum 1.909 -1.010 -5.193 5.624 Atomic orbital electron populations 1.21813 0.95903 1.01176 1.01960 1.21298 0.95069 0.94968 1.02570 1.21334 0.92856 0.98468 1.00764 0.87750 1.21701 1.01559 1.00301 0.95753 1.20535 0.90019 0.82123 0.76493 1.90571 1.68439 1.34755 1.51706 1.48453 1.07841 1.14696 1.61184 1.20980 0.82048 1.01744 0.96140 1.22088 0.99366 1.00609 0.96391 1.21178 0.86672 0.92112 0.95872 0.92230 1.22640 0.97362 0.98048 0.98786 1.21969 0.96571 0.99141 0.98374 1.20714 0.94495 0.94777 0.87190 0.87425 1.23256 0.98470 0.83033 0.95715 1.44986 1.01771 1.54267 1.29200 1.19016 0.89260 1.17069 1.07614 0.90469 1.24672 0.97144 0.99966 0.98681 1.69678 1.19447 1.37269 1.30988 0.86170 0.80755 0.77785 0.81357 1.21663 1.21659 1.20987 0.92695 0.93053 0.92504 0.91673 0.91988 0.91801 0.92330 0.92755 0.91815 0.90565 0.93126 0.92337 0.92420 0.92183 0.92227 0.92402 0.86431 0.94745 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.15 0.36 -1.73 16 2 C -0.10 -1.68 4.83 -26.73 -0.13 -1.81 16 3 C -0.11 -2.03 1.99 -91.77 -0.18 -2.22 16 4 H 0.10 2.09 6.28 -51.93 -0.33 1.77 16 5 C -0.14 -2.04 8.69 37.16 0.32 -1.72 16 6 C 0.52 10.78 6.79 -10.98 -0.07 10.70 16 7 O -0.57 -13.19 15.65 5.56 0.09 -13.10 16 8 N -0.59 -11.90 2.85 -173.15 -0.49 -12.39 16 9 C 0.11 2.14 5.19 -5.29 -0.03 2.11 16 10 C -0.14 -2.72 5.13 -27.92 -0.14 -2.86 16 11 C 0.15 2.93 4.01 -66.68 -0.27 2.66 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.13 -2.14 6.01 -25.18 -0.15 -2.30 16 14 C -0.12 -2.13 5.81 -27.03 -0.16 -2.28 16 15 C 0.14 2.86 1.97 -68.44 -0.14 2.72 16 16 H 0.11 2.63 5.88 -51.93 -0.31 2.32 16 17 C 0.12 2.39 4.97 -2.62 -0.01 2.38 16 18 N -0.58 -13.42 2.69 -156.80 -0.42 -13.84 16 19 C -0.20 -5.18 10.38 -15.06 -0.16 -5.34 16 20 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -23.59 8.43 55.49 0.47 -23.12 16 23 Si 0.91 20.93 29.56 -169.99 -5.02 15.90 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 H 0.05 0.68 6.74 -51.93 -0.35 0.33 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.07 8.03 -51.93 -0.42 0.66 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.85 6.94 -51.93 -0.36 0.49 16 33 H 0.06 0.88 7.29 -51.93 -0.38 0.51 16 34 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.06 1.22 7.17 -51.93 -0.37 0.85 16 36 H 0.08 1.30 3.93 -51.93 -0.20 1.09 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.86 7.40 -51.93 -0.38 0.48 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.92 6.16 -51.93 -0.32 0.60 16 43 H 0.12 2.67 4.14 -51.92 -0.21 2.45 16 44 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 45 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -27.67 328.74 -8.68 -36.34 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.39 Total: 5.28 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.85 Total: -0.04 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.45 Total: -49.35 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.67 -8.68 -36.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045716877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.400 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds