Wall clock time and date at job start Tue Mar 31 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47363 * 2 1 4 4 H 1.08999 * 109.47256 * 54.99936 * 3 2 1 5 5 C 1.53000 * 109.47151 * 295.00472 * 3 2 1 6 6 C 1.50700 * 109.47463 * 175.00142 * 3 2 1 7 7 O 1.21280 * 119.99863 * 24.18244 * 6 3 2 8 8 N 1.34779 * 119.99724 * 204.18085 * 6 3 2 9 9 C 1.44793 * 120.17588 * 174.90042 * 8 6 3 10 10 C 1.52350 * 111.74781 * 265.09922 * 9 8 6 11 11 C 1.51310 * 112.41428 * 284.34475 * 10 9 8 12 12 H 1.09001 * 111.31361 * 186.29591 * 11 10 9 13 13 C 1.54726 * 107.22407 * 308.33328 * 11 10 9 14 14 C 1.54233 * 104.37087 * 89.47164 * 13 11 10 15 15 C 1.51125 * 105.27916 * 11.32792 * 14 13 11 16 16 H 1.09004 * 106.47867 * 122.81758 * 15 14 13 17 17 C 1.49812 * 120.18743 * 354.88548 * 8 6 3 18 18 N 1.48064 * 109.76777 * 8.25923 * 15 14 13 19 19 C 1.36935 * 127.84118 * 155.03041 * 18 15 14 20 20 H 1.07999 * 119.99945 * 173.33990 * 19 18 15 21 21 C 1.38817 * 119.99997 * 353.34718 * 19 18 15 22 22 N 1.31610 * 120.00104 * 6.90371 * 21 19 18 23 23 Si 1.86800 * 119.99705 * 186.62412 * 21 19 18 24 24 H 1.48508 * 109.46715 * 84.96528 * 23 21 19 25 25 H 1.48496 * 109.47271 * 204.96219 * 23 21 19 26 26 H 1.48503 * 109.47313 * 324.96910 * 23 21 19 27 27 H 1.08996 * 109.47245 * 59.99749 * 1 2 3 28 28 H 1.08998 * 109.47400 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47160 * 299.99918 * 1 2 3 30 30 H 1.09001 * 109.47160 * 240.00082 * 2 1 3 31 31 H 1.09003 * 109.47397 * 119.99580 * 2 1 3 32 32 H 1.09001 * 109.47516 * 67.39570 * 5 3 2 33 33 H 1.08996 * 109.47479 * 187.40481 * 5 3 2 34 34 H 1.09003 * 109.46766 * 307.40268 * 5 3 2 35 35 H 1.09003 * 108.93280 * 25.24424 * 9 8 6 36 36 H 1.09004 * 108.92835 * 143.91613 * 9 8 6 37 37 H 1.08996 * 108.31528 * 164.18381 * 10 9 8 38 38 H 1.09006 * 109.99188 * 45.64774 * 10 9 8 39 39 H 1.09004 * 110.44952 * 208.19495 * 13 11 10 40 40 H 1.08997 * 110.44790 * 330.62345 * 13 11 10 41 41 H 1.08996 * 110.28099 * 130.51760 * 14 13 11 42 42 H 1.09000 * 110.27885 * 252.61026 * 14 13 11 43 43 H 1.09009 * 109.54185 * 30.85216 * 17 8 6 44 44 H 1.08997 * 109.54566 * 270.58462 * 17 8 6 45 45 H 0.97002 * 120.00081 * 179.72660 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1804 0.4748 -0.2272 8 7 4.1754 2.5234 0.6245 9 6 5.6056 2.4890 0.8482 10 6 5.9433 2.1092 2.2844 11 6 5.7098 3.2483 3.2526 12 1 6.0596 2.9956 4.2535 13 6 6.4510 4.4854 2.6919 14 6 5.4117 5.1759 1.7853 15 6 4.0988 4.4939 2.0934 16 1 3.4104 5.2772 2.4108 17 6 3.4040 3.7651 0.9524 18 7 4.2636 3.5923 3.2563 19 6 3.3011 3.1672 4.1326 20 1 3.5397 2.4217 4.8767 21 6 2.0187 3.6943 4.0645 22 7 1.6896 4.4989 3.0764 23 14 0.7579 3.2553 5.3711 24 1 0.9163 4.1625 6.5362 25 1 -0.6089 3.4043 4.8100 26 1 0.9642 1.8505 5.8060 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5518 2.2432 -1.3361 33 1 2.1078 3.1070 -1.3659 34 1 1.9575 1.5168 -2.1514 35 1 6.0508 1.7537 0.1779 36 1 6.0224 3.4706 0.6227 37 1 6.9948 1.8250 2.3254 38 1 5.3404 1.2561 2.5959 39 1 6.7506 5.1497 3.5025 40 1 7.3207 4.1775 2.1116 41 1 5.3534 6.2389 2.0191 42 1 5.6709 5.0327 0.7363 43 1 2.3915 3.4963 1.2541 44 1 3.3650 4.4122 0.0762 45 1 0.7923 4.8641 3.0266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045716877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:17 Heat of formation + Delta-G solvation = -23.253808 kcal Electronic energy + Delta-G solvation = -24674.458628 eV Core-core repulsion = 21498.927630 eV Total energy + Delta-G solvation = -3175.530997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56532 -39.83079 -36.41503 -35.59873 -34.86711 -33.11561 -31.30772 -30.72017 -28.63289 -27.52801 -26.06735 -25.66397 -23.84959 -22.05181 -21.18618 -20.68794 -19.58792 -18.70346 -17.82247 -16.93668 -16.72495 -16.50552 -16.22547 -15.69914 -15.37593 -15.10356 -14.60030 -14.21251 -14.16886 -13.81977 -13.61869 -13.43126 -13.09510 -13.05204 -12.97808 -12.74205 -12.65389 -12.63376 -12.50529 -12.41022 -12.32714 -11.98852 -11.78108 -11.65125 -11.47833 -11.36158 -11.25815 -10.87408 -10.65724 -10.35808 -9.34095 -8.77803 -7.73036 -5.08406 1.47199 1.49901 1.54767 1.75818 2.32695 2.52569 3.36243 3.57656 3.69209 3.87007 3.97206 4.02874 4.13651 4.20968 4.28151 4.41430 4.43547 4.51174 4.55564 4.58946 4.67259 4.73625 4.78223 4.89300 4.90131 4.96764 5.01195 5.04577 5.08864 5.12215 5.16862 5.24110 5.26172 5.35401 5.37795 5.43749 5.53150 5.59519 5.79336 5.92286 5.93490 6.38403 6.63892 7.19409 7.36886 7.82260 8.58228 9.30420 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.010122 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.092932 B = 2765.657162 C = 4195.700110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.110 4.110 4 H 0.080 0.920 5 C -0.128 4.128 6 C 0.509 3.491 7 O -0.601 6.601 8 N -0.592 5.592 9 C 0.112 3.888 10 C -0.135 4.135 11 C 0.139 3.861 12 H 0.053 0.947 13 C -0.117 4.117 14 C -0.118 4.118 15 C 0.137 3.863 16 H 0.073 0.927 17 C 0.124 3.876 18 N -0.600 5.600 19 C -0.218 4.218 20 H 0.063 0.937 21 C -0.045 4.045 22 N -0.928 5.928 23 Si 0.956 3.044 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.288 1.288 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.017 0.983 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 0.346 -7.132 7.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.131 4.131 4 H 0.098 0.902 5 C -0.185 4.185 6 C 0.299 3.701 7 O -0.485 6.485 8 N -0.322 5.322 9 C -0.011 4.011 10 C -0.175 4.175 11 C 0.032 3.968 12 H 0.071 0.929 13 C -0.156 4.156 14 C -0.156 4.156 15 C 0.031 3.969 16 H 0.091 0.909 17 C 0.002 3.998 18 N -0.322 5.322 19 C -0.347 4.347 20 H 0.081 0.919 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.214 1.214 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.300 -0.083 -7.195 7.915 hybrid contribution -0.865 -0.456 1.190 1.540 sum 2.434 -0.539 -6.005 6.502 Atomic orbital electron populations 1.21766 0.93511 1.02516 1.02324 1.21281 0.97108 0.93821 1.01414 1.21329 0.90921 0.99338 1.01485 0.90195 1.21671 1.02887 0.99884 0.94075 1.21060 0.91180 0.81778 0.76074 1.90543 1.69238 1.35571 1.53104 1.48533 1.08564 1.14496 1.60600 1.21128 0.81332 1.02991 0.95693 1.21994 1.00460 0.98748 0.96318 1.21396 0.85290 0.93995 0.96074 0.92864 1.22576 0.97624 0.96236 0.99136 1.21931 0.94489 0.99303 0.99828 1.20754 0.95976 0.93522 0.86656 0.90883 1.23027 0.97250 0.83237 0.96292 1.45151 1.02895 1.54654 1.29545 1.19080 0.90384 1.17062 1.08160 0.91863 1.25151 0.98224 1.00475 1.00021 1.69844 1.19145 1.37424 1.31325 0.85446 0.79152 0.77118 0.79660 1.21816 1.21728 1.21389 0.90750 0.91290 0.93627 0.91402 0.94524 0.89735 0.92479 0.91860 0.92128 0.88054 0.89992 0.96436 0.91662 0.88883 0.91218 0.90192 0.88903 0.92738 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.67 71.98 0.70 -3.11 16 2 C -0.10 -3.26 4.83 30.59 0.15 -3.11 16 3 C -0.11 -3.95 1.99 -11.54 -0.02 -3.97 16 4 H 0.08 3.30 6.28 -2.39 -0.01 3.28 16 5 C -0.13 -3.65 8.69 71.98 0.63 -3.02 16 6 C 0.51 21.23 6.79 87.66 0.60 21.82 16 7 O -0.60 -27.83 15.65 -3.03 -0.05 -27.87 16 8 N -0.59 -23.53 2.85 -820.12 -2.34 -25.87 16 9 C 0.11 3.98 5.19 86.48 0.45 4.43 16 10 C -0.13 -4.95 5.13 29.83 0.15 -4.80 16 11 C 0.14 5.31 4.01 44.61 0.18 5.49 16 12 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.12 -3.49 6.01 31.60 0.19 -3.30 16 14 C -0.12 -3.74 5.81 30.40 0.18 -3.56 16 15 C 0.14 5.72 1.97 43.81 0.09 5.81 16 16 H 0.07 3.58 5.88 -2.38 -0.01 3.56 16 17 C 0.12 5.00 4.97 85.46 0.42 5.42 16 18 N -0.60 -27.90 2.69 -650.01 -1.75 -29.64 16 19 C -0.22 -11.49 10.38 84.04 0.87 -10.62 16 20 H 0.06 3.41 7.84 -2.91 -0.02 3.38 16 21 C -0.05 -2.35 5.49 84.86 0.47 -1.88 16 22 N -0.93 -48.13 8.43 21.65 0.18 -47.95 16 23 Si 0.96 43.81 29.56 68.60 2.03 45.84 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H 0.07 1.68 6.74 -2.39 -0.02 1.66 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 2.05 6.94 -2.39 -0.02 2.04 16 33 H 0.06 1.64 7.29 -2.39 -0.02 1.62 16 34 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 35 H 0.06 2.22 7.17 -2.39 -0.02 2.20 16 36 H 0.10 3.09 3.93 -2.38 -0.01 3.08 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 2.20 7.40 -2.39 -0.02 2.19 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 2.20 6.16 -2.39 -0.01 2.19 16 43 H 0.09 4.28 4.14 -2.38 -0.01 4.27 16 44 H 0.05 1.96 7.92 -2.39 -0.02 1.94 16 45 H 0.25 12.73 8.31 -92.71 -0.77 11.96 16 Total: -1.00 -61.13 328.74 4.08 -57.05 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.97 Total: 22.87 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.04 Total: 5.58 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.90 Total: -103.46 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -61.13 4.08 -57.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045716877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.793 kcal (2) G-P(sol) polarization free energy of solvation -61.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds