Wall clock time and date at job start Tue Mar 31 2020 03:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 H 1.09002 * 109.46763 * 54.99709 * 3 2 1 5 5 C 1.53001 * 109.47150 * 295.00210 * 3 2 1 6 6 C 1.50692 * 109.47014 * 174.99973 * 3 2 1 7 7 O 1.21286 * 119.99840 * 94.42156 * 6 3 2 8 8 N 1.34777 * 120.00263 * 274.41376 * 6 3 2 9 9 C 1.46806 * 119.57501 * 5.39011 * 8 6 3 10 10 C 1.53461 * 107.59043 * 127.94411 * 9 8 6 11 11 C 1.52735 * 108.44501 * 58.08287 * 10 9 8 12 12 C 1.53015 * 110.79861 * 296.23188 * 11 10 9 13 13 H 1.09002 * 111.38195 * 291.22580 * 12 11 10 14 14 C 1.45117 * 119.58004 * 185.11772 * 8 6 3 15 15 H 1.08999 * 109.97075 * 348.07243 * 14 8 6 16 16 C 1.54424 * 111.60771 * 111.35317 * 14 8 6 17 17 C 1.54563 * 102.44736 * 156.58123 * 16 14 8 18 18 N 1.46000 * 107.33522 * 338.32117 * 17 16 14 19 19 C 1.36942 * 125.65473 * 177.29972 * 18 17 16 20 20 H 1.07996 * 120.00160 * 175.33245 * 19 18 17 21 21 C 1.38813 * 119.99760 * 355.33872 * 19 18 17 22 22 N 1.31624 * 120.00027 * 5.34347 * 21 19 18 23 23 Si 1.86797 * 120.00082 * 185.34972 * 21 19 18 24 24 H 1.48501 * 109.47497 * 94.99343 * 23 21 19 25 25 H 1.48493 * 109.47465 * 214.99628 * 23 21 19 26 26 H 1.48505 * 109.47089 * 334.99455 * 23 21 19 27 27 H 1.09005 * 109.46884 * 300.00111 * 1 2 3 28 28 H 1.09007 * 109.46868 * 59.99717 * 1 2 3 29 29 H 1.08995 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46884 * 239.99889 * 2 1 3 31 31 H 1.09000 * 109.46795 * 120.00687 * 2 1 3 32 32 H 1.08998 * 109.46988 * 295.43044 * 5 3 2 33 33 H 1.09002 * 109.47080 * 175.42529 * 5 3 2 34 34 H 1.08998 * 109.47110 * 55.42676 * 5 3 2 35 35 H 1.08998 * 109.83329 * 247.46745 * 9 8 6 36 36 H 1.08996 * 109.83304 * 8.42011 * 9 8 6 37 37 H 1.09002 * 109.63935 * 177.76688 * 10 9 8 38 38 H 1.08999 * 109.64113 * 298.17673 * 10 9 8 39 39 H 1.08993 * 109.21107 * 56.56961 * 11 10 9 40 40 H 1.08998 * 109.21105 * 175.88945 * 11 10 9 41 41 H 1.08997 * 110.81296 * 274.82397 * 16 14 8 42 42 H 1.09009 * 110.80948 * 38.34283 * 16 14 8 43 43 H 1.09001 * 109.88400 * 97.74148 * 17 16 14 44 44 H 1.09009 * 109.88472 * 218.75559 * 17 16 14 45 45 H 0.96998 * 119.99593 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5420 1.4441 0.1238 7 8 4.2325 1.4953 -0.8720 8 7 4.1179 1.3889 1.3411 9 6 3.2789 1.2077 2.5321 10 6 3.8513 0.0266 3.3273 11 6 5.3044 0.3394 3.6785 12 6 6.1563 0.4560 2.4128 13 1 6.2705 -0.5096 1.9203 14 6 5.5599 1.5033 1.4572 15 1 6.0208 1.4146 0.4735 16 6 5.9724 2.8275 2.1363 17 6 7.3732 2.4921 2.6969 18 7 7.4579 1.0394 2.8154 19 6 8.5582 0.3348 3.2256 20 1 8.4974 -0.7360 3.3522 21 6 9.7517 0.9970 3.4786 22 7 9.7989 2.3114 3.4267 23 14 11.2908 0.0228 3.8926 24 1 12.0851 -0.1965 2.6572 25 1 12.1055 0.7791 4.8771 26 1 10.9054 -1.2888 4.4726 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 2.1349 1.6370 -2.1433 33 1 1.9273 3.1762 -1.2737 34 1 0.5555 2.0537 -1.4363 35 1 3.3028 2.1106 3.1422 36 1 2.2538 0.9899 2.2326 37 1 3.2751 -0.1127 4.2421 38 1 3.8039 -0.8793 2.7230 39 1 5.3463 1.2804 4.2269 40 1 5.7015 -0.4585 4.3059 41 1 6.0304 3.6352 1.4068 42 1 5.2832 3.0806 2.9420 43 1 8.1420 2.8533 2.0139 44 1 7.5009 2.9537 3.6762 45 1 10.6330 2.7740 3.6032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049342243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:31 Heat of formation + Delta-G solvation = -20.129183 kcal Electronic energy + Delta-G solvation = -23632.210869 eV Core-core repulsion = 20456.815365 eV Total energy + Delta-G solvation = -3175.395503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51477 -38.26903 -35.63454 -35.15377 -32.36476 -32.17123 -29.84305 -28.98069 -28.28462 -25.75080 -24.30471 -24.24425 -22.15385 -21.61123 -20.04416 -19.45690 -18.00395 -17.37850 -16.87342 -15.71545 -15.25422 -14.89552 -14.75077 -14.25894 -14.02772 -13.73997 -13.63349 -13.32431 -13.00964 -12.64366 -12.54680 -12.22160 -12.09726 -11.94971 -11.87813 -11.58845 -11.29839 -11.06632 -10.98197 -10.86464 -10.85305 -10.75810 -10.62104 -10.44253 -10.05924 -10.03302 -9.66567 -9.59084 -9.33651 -8.57788 -8.22073 -6.84320 -5.71037 -3.04789 2.81369 3.22539 3.41315 3.46498 3.48135 4.47112 4.50110 4.67547 4.75642 4.93554 5.14868 5.17983 5.18114 5.29011 5.34280 5.41013 5.42793 5.50521 5.60496 5.64684 5.69172 5.71341 5.81978 5.84131 5.86706 5.90243 6.01679 6.09571 6.15505 6.19492 6.24803 6.32727 6.38795 6.52790 6.62131 6.76115 7.02049 7.09012 7.55653 7.63930 7.69681 7.84440 8.26227 8.43613 9.22946 9.81800 10.47801 11.39934 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032189 B = 0.004445 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.666729 B = 6297.619996 C = 6579.071172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.111 4.111 4 H 0.090 0.910 5 C -0.136 4.136 6 C 0.513 3.487 7 O -0.543 6.543 8 N -0.593 5.593 9 C 0.104 3.896 10 C -0.132 4.132 11 C -0.129 4.129 12 C 0.156 3.844 13 H 0.058 0.942 14 C 0.129 3.871 15 H 0.101 0.899 16 C -0.151 4.151 17 C 0.181 3.819 18 N -0.596 5.596 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.473 -1.822 -2.941 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.132 4.132 4 H 0.108 0.892 5 C -0.194 4.194 6 C 0.300 3.700 7 O -0.420 6.420 8 N -0.325 5.325 9 C -0.019 4.019 10 C -0.171 4.171 11 C -0.169 4.169 12 C 0.047 3.953 13 H 0.076 0.924 14 C 0.025 3.975 15 H 0.119 0.881 16 C -0.191 4.191 17 C 0.055 3.945 18 N -0.320 5.320 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.823 -1.727 -3.387 19.203 hybrid contribution 0.908 -0.386 0.476 1.095 sum -17.915 -2.113 -2.910 18.272 Atomic orbital electron populations 1.21823 0.95073 1.01863 1.02072 1.21510 0.96306 0.94450 1.03110 1.21372 0.92419 0.98582 1.00857 0.89172 1.21696 1.00892 1.00491 0.96293 1.20681 0.90374 0.75929 0.82967 1.90674 1.64950 1.49913 1.36502 1.47644 1.07398 1.71316 1.06096 1.21889 0.94061 0.98970 0.86959 1.21921 0.98090 0.97594 0.99526 1.22104 0.92760 1.02036 1.00038 1.21266 0.86963 0.95017 0.92049 0.92371 1.21684 0.78282 0.96624 1.00959 0.88125 1.23121 1.00228 0.96369 0.99335 1.20987 0.90025 0.84359 0.99099 1.44425 1.08369 1.01839 1.77399 1.19043 0.87140 0.91204 1.38254 0.90435 1.24821 0.97729 0.95760 1.01899 1.69978 1.25563 1.05751 1.55357 0.86122 0.83343 0.78805 0.77634 1.21607 1.21786 1.20655 0.92580 0.92247 0.92481 0.91176 0.91298 0.91391 0.92543 0.91903 0.91415 0.89868 0.91370 0.91863 0.91865 0.92204 0.92186 0.92340 0.92933 0.94440 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.12 -1.08 5.05 -26.73 -0.14 -1.22 16 3 C -0.11 -1.21 1.85 -91.78 -0.17 -1.38 16 4 H 0.09 0.82 6.71 -51.93 -0.35 0.48 16 5 C -0.14 -1.42 8.68 37.16 0.32 -1.10 16 6 C 0.51 7.98 6.75 -10.99 -0.07 7.91 16 7 O -0.54 -10.68 15.33 5.55 0.09 -10.59 16 8 N -0.59 -9.18 2.74 -165.26 -0.45 -9.64 16 9 C 0.10 1.25 5.62 -3.64 -0.02 1.23 16 10 C -0.13 -1.70 6.11 -26.63 -0.16 -1.86 16 11 C -0.13 -2.25 5.10 -26.86 -0.14 -2.39 16 12 C 0.16 3.21 3.58 -66.56 -0.24 2.97 16 13 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.48 3.12 -67.50 -0.21 2.27 16 15 H 0.10 2.22 6.93 -51.93 -0.36 1.86 16 16 C -0.15 -2.97 6.08 -25.16 -0.15 -3.12 16 17 C 0.18 4.43 5.17 -3.49 -0.02 4.41 16 18 N -0.60 -15.05 2.88 -163.30 -0.47 -15.52 16 19 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 22 N -0.92 -27.06 10.33 55.49 0.57 -26.48 16 23 Si 0.91 22.20 29.56 -169.99 -5.02 17.17 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 6.47 -51.92 -0.34 0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.64 7.11 -51.93 -0.37 0.28 16 32 H 0.07 0.82 7.70 -51.93 -0.40 0.42 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.50 6.36 -51.93 -0.33 0.17 16 35 H 0.07 0.80 7.54 -51.93 -0.39 0.41 16 36 H 0.08 0.76 4.73 -51.93 -0.25 0.52 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.18 7.13 -51.93 -0.37 0.80 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.05 6.83 -51.92 -0.35 0.70 16 43 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 44 H 0.04 1.00 7.70 -51.92 -0.40 0.60 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -31.48 336.49 -8.73 -40.22 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.63 Total: -0.51 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.89 Total: 0.28 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.35 Total: -51.64 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.48 -8.73 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049342243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.088 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds