Wall clock time and date at job start Tue Mar 31 2020 03:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 H 1.09002 * 109.46763 * 54.99709 * 3 2 1 5 5 C 1.53001 * 109.47150 * 295.00210 * 3 2 1 6 6 C 1.50692 * 109.47014 * 174.99973 * 3 2 1 7 7 O 1.21286 * 119.99840 * 94.42156 * 6 3 2 8 8 N 1.34777 * 120.00263 * 274.41376 * 6 3 2 9 9 C 1.46806 * 119.57501 * 5.39011 * 8 6 3 10 10 C 1.53461 * 107.59043 * 127.94411 * 9 8 6 11 11 C 1.52735 * 108.44501 * 58.08287 * 10 9 8 12 12 C 1.53015 * 110.79861 * 296.23188 * 11 10 9 13 13 H 1.09002 * 111.38195 * 291.22580 * 12 11 10 14 14 C 1.45117 * 119.58004 * 185.11772 * 8 6 3 15 15 H 1.08999 * 109.97075 * 348.07243 * 14 8 6 16 16 C 1.54424 * 111.60771 * 111.35317 * 14 8 6 17 17 C 1.54563 * 102.44736 * 156.58123 * 16 14 8 18 18 N 1.46000 * 107.33522 * 338.32117 * 17 16 14 19 19 C 1.36942 * 125.65473 * 177.29972 * 18 17 16 20 20 H 1.07996 * 120.00160 * 175.33245 * 19 18 17 21 21 C 1.38813 * 119.99760 * 355.33872 * 19 18 17 22 22 N 1.31624 * 120.00027 * 5.34347 * 21 19 18 23 23 Si 1.86797 * 120.00082 * 185.34972 * 21 19 18 24 24 H 1.48501 * 109.47497 * 94.99343 * 23 21 19 25 25 H 1.48493 * 109.47465 * 214.99628 * 23 21 19 26 26 H 1.48505 * 109.47089 * 334.99455 * 23 21 19 27 27 H 1.09005 * 109.46884 * 300.00111 * 1 2 3 28 28 H 1.09007 * 109.46868 * 59.99717 * 1 2 3 29 29 H 1.08995 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46884 * 239.99889 * 2 1 3 31 31 H 1.09000 * 109.46795 * 120.00687 * 2 1 3 32 32 H 1.08998 * 109.46988 * 295.43044 * 5 3 2 33 33 H 1.09002 * 109.47080 * 175.42529 * 5 3 2 34 34 H 1.08998 * 109.47110 * 55.42676 * 5 3 2 35 35 H 1.08998 * 109.83329 * 247.46745 * 9 8 6 36 36 H 1.08996 * 109.83304 * 8.42011 * 9 8 6 37 37 H 1.09002 * 109.63935 * 177.76688 * 10 9 8 38 38 H 1.08999 * 109.64113 * 298.17673 * 10 9 8 39 39 H 1.08993 * 109.21107 * 56.56961 * 11 10 9 40 40 H 1.08998 * 109.21105 * 175.88945 * 11 10 9 41 41 H 1.08997 * 110.81296 * 274.82397 * 16 14 8 42 42 H 1.09009 * 110.80948 * 38.34283 * 16 14 8 43 43 H 1.09001 * 109.88400 * 97.74148 * 17 16 14 44 44 H 1.09009 * 109.88472 * 218.75559 * 17 16 14 45 45 H 0.96998 * 119.99593 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5420 1.4441 0.1238 7 8 4.2325 1.4953 -0.8720 8 7 4.1179 1.3889 1.3411 9 6 3.2789 1.2077 2.5321 10 6 3.8513 0.0266 3.3273 11 6 5.3044 0.3394 3.6785 12 6 6.1563 0.4560 2.4128 13 1 6.2705 -0.5096 1.9203 14 6 5.5599 1.5033 1.4572 15 1 6.0208 1.4146 0.4735 16 6 5.9724 2.8275 2.1363 17 6 7.3732 2.4921 2.6969 18 7 7.4579 1.0394 2.8154 19 6 8.5582 0.3348 3.2256 20 1 8.4974 -0.7360 3.3522 21 6 9.7517 0.9970 3.4786 22 7 9.7989 2.3114 3.4267 23 14 11.2908 0.0228 3.8926 24 1 12.0851 -0.1965 2.6572 25 1 12.1055 0.7791 4.8771 26 1 10.9054 -1.2888 4.4726 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 2.1349 1.6370 -2.1433 33 1 1.9273 3.1762 -1.2737 34 1 0.5555 2.0537 -1.4363 35 1 3.3028 2.1106 3.1422 36 1 2.2538 0.9899 2.2326 37 1 3.2751 -0.1127 4.2421 38 1 3.8039 -0.8793 2.7230 39 1 5.3463 1.2804 4.2269 40 1 5.7015 -0.4585 4.3059 41 1 6.0304 3.6352 1.4068 42 1 5.2832 3.0806 2.9420 43 1 8.1420 2.8533 2.0139 44 1 7.5009 2.9537 3.6762 45 1 10.6330 2.7740 3.6032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049342243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:31 Heat of formation + Delta-G solvation = -38.987170 kcal Electronic energy + Delta-G solvation = -23633.028612 eV Core-core repulsion = 20456.815365 eV Total energy + Delta-G solvation = -3176.213247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83521 -39.74552 -36.87396 -36.39275 -34.11463 -33.71048 -31.00508 -30.42760 -29.84117 -27.01007 -26.01886 -25.46916 -23.40819 -22.66413 -21.92162 -20.70045 -19.36237 -18.77743 -18.54866 -16.97813 -16.82183 -16.28867 -16.15822 -15.77230 -15.33770 -15.03409 -14.90243 -14.53497 -14.19890 -14.14796 -13.78968 -13.51275 -13.44643 -13.13857 -12.96098 -12.83580 -12.68961 -12.59871 -12.43419 -12.30568 -12.25621 -12.05038 -11.93100 -11.70972 -11.60684 -11.53447 -11.50497 -11.20314 -10.70846 -10.59710 -9.59251 -8.90736 -7.86869 -5.22602 1.43531 1.46274 1.54581 1.61256 1.98504 2.48299 3.31031 3.45358 3.57423 3.84362 3.89055 3.94742 4.01311 4.05287 4.11245 4.14221 4.34631 4.43700 4.52186 4.57076 4.60882 4.63780 4.67403 4.76444 4.80356 4.84541 4.95534 4.97276 5.06808 5.11745 5.18849 5.21077 5.23742 5.36414 5.38655 5.40989 5.54140 5.56756 5.62476 5.66012 5.72029 6.17370 6.48027 7.08275 7.20903 7.74272 8.39089 9.23045 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032189 B = 0.004445 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.666729 B = 6297.619996 C = 6579.071172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.101 4.101 4 H 0.122 0.878 5 C -0.135 4.135 6 C 0.506 3.494 7 O -0.594 6.594 8 N -0.592 5.592 9 C 0.100 3.900 10 C -0.122 4.122 11 C -0.119 4.119 12 C 0.150 3.850 13 H 0.045 0.955 14 C 0.144 3.856 15 H 0.063 0.937 16 C -0.132 4.132 17 C 0.192 3.808 18 N -0.617 5.617 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.064 4.064 22 N -0.950 5.950 23 Si 0.977 3.023 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.266 1.266 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.087 -2.716 -1.907 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.122 4.122 4 H 0.140 0.860 5 C -0.193 4.193 6 C 0.296 3.704 7 O -0.474 6.474 8 N -0.323 5.323 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.158 4.158 12 C 0.043 3.957 13 H 0.063 0.937 14 C 0.038 3.962 15 H 0.081 0.919 16 C -0.172 4.172 17 C 0.066 3.934 18 N -0.341 5.341 19 C -0.368 4.368 20 H 0.099 0.901 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.805 3.195 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.190 1.190 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.504 -2.653 -2.336 22.780 hybrid contribution 2.028 -0.140 0.106 2.035 sum -20.477 -2.793 -2.230 20.786 Atomic orbital electron populations 1.21804 0.92677 1.02729 1.03134 1.21522 0.98214 0.92891 1.02543 1.21460 0.88285 1.00245 1.02228 0.85997 1.21715 1.02644 0.99663 0.95268 1.21688 0.92409 0.74334 0.81976 1.90658 1.66541 1.51997 1.38232 1.47711 1.05723 1.71085 1.07747 1.22251 0.95182 0.99229 0.85456 1.21888 0.94760 0.98034 1.01417 1.21889 0.95504 1.01118 0.97332 1.21470 0.85797 0.94497 0.93928 0.93664 1.21137 0.81081 0.95601 0.98402 0.91876 1.22920 0.97567 0.96737 0.99927 1.20658 0.91890 0.84155 0.96673 1.44681 1.09725 1.02292 1.77435 1.19411 0.88245 0.91660 1.37512 0.90079 1.25654 1.00679 0.96731 1.02612 1.70196 1.25740 1.07227 1.56719 0.85083 0.79386 0.77972 0.77050 1.21798 1.21951 1.19032 0.90816 0.91874 0.91818 0.93047 0.90792 0.93786 0.93231 0.88707 0.90146 0.85771 0.87675 0.91505 0.92926 0.93414 0.91803 0.89724 0.97237 0.97295 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 71.98 0.70 -0.67 16 2 C -0.11 -1.73 5.05 30.60 0.15 -1.57 16 3 C -0.10 -1.87 1.85 -11.54 -0.02 -1.89 16 4 H 0.12 1.53 6.71 -2.39 -0.02 1.52 16 5 C -0.14 -2.52 8.68 71.98 0.63 -1.90 16 6 C 0.51 15.07 6.75 87.65 0.59 15.67 16 7 O -0.59 -23.86 15.33 -3.05 -0.05 -23.90 16 8 N -0.59 -17.25 2.74 -795.15 -2.18 -19.43 16 9 C 0.10 1.95 5.62 86.48 0.49 2.44 16 10 C -0.12 -2.65 6.11 30.66 0.19 -2.46 16 11 C -0.12 -3.97 5.10 30.51 0.16 -3.81 16 12 C 0.15 6.28 3.58 44.94 0.16 6.44 16 13 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 14 C 0.14 5.60 3.12 46.01 0.14 5.74 16 15 H 0.06 2.94 6.93 -2.39 -0.02 2.92 16 16 C -0.13 -5.25 6.08 31.61 0.19 -5.06 16 17 C 0.19 9.91 5.17 87.01 0.45 10.36 16 18 N -0.62 -32.37 2.88 -670.57 -1.93 -34.31 16 19 C -0.24 -13.68 10.28 84.03 0.86 -12.82 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.06 -3.70 5.48 84.86 0.47 -3.24 16 22 N -0.95 -58.49 10.33 21.65 0.22 -58.27 16 23 Si 0.98 46.77 29.56 68.60 2.03 48.80 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.56 6.47 -2.38 -0.02 0.54 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.06 7.11 -2.39 -0.02 1.04 16 32 H 0.04 1.03 7.70 -2.39 -0.02 1.01 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.15 6.36 -2.39 -0.02 1.14 16 35 H 0.08 1.47 7.54 -2.39 -0.02 1.45 16 36 H 0.12 1.49 4.73 -2.39 -0.01 1.48 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.88 7.13 -2.39 -0.02 1.86 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.08 2.92 6.83 -2.38 -0.02 2.90 16 43 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 44 H 0.01 0.50 7.70 -2.38 -0.02 0.48 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -74.46 336.49 4.20 -70.26 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.96 Total: 9.63 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.15 Total: 7.21 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.89 Total: -112.00 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -74.46 4.20 -70.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049342243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.274 kcal (2) G-P(sol) polarization free energy of solvation -74.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds