Wall clock time and date at job start Tue Mar 31 2020 03:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46879 * 2 1 4 4 H 1.09001 * 109.47411 * 55.00488 * 3 2 1 5 5 C 1.53001 * 109.47293 * 295.00394 * 3 2 1 6 6 C 1.50700 * 109.47306 * 175.00034 * 3 2 1 7 7 O 1.21285 * 119.99672 * 15.15912 * 6 3 2 8 8 N 1.34771 * 120.00217 * 195.15453 * 6 3 2 9 9 C 1.45733 * 117.76044 * 3.68463 * 8 6 3 10 10 C 1.52724 * 109.73270 * 218.79400 * 9 8 6 11 11 C 1.52942 * 108.59449 * 306.46544 * 10 9 8 12 12 C 1.52924 * 109.79504 * 65.86368 * 11 10 9 13 13 H 1.08996 * 111.26509 * 66.64312 * 12 11 10 14 14 C 1.44202 * 117.75730 * 183.95005 * 8 6 3 15 15 H 1.09001 * 109.22295 * 27.36989 * 14 8 6 16 16 C 1.54062 * 111.76084 * 266.47012 * 14 8 6 17 17 C 1.54052 * 103.74394 * 206.75057 * 16 14 8 18 18 N 1.46887 * 107.70864 * 17.13000 * 17 16 14 19 19 C 1.36938 * 125.57732 * 182.95660 * 18 17 16 20 20 H 1.08002 * 119.99254 * 167.33200 * 19 18 17 21 21 C 1.38808 * 120.00563 * 347.33857 * 19 18 17 22 22 N 1.31618 * 119.99704 * 353.80007 * 21 19 18 23 23 Si 1.86799 * 120.00003 * 173.80355 * 21 19 18 24 24 H 1.48492 * 109.47072 * 94.57605 * 23 21 19 25 25 H 1.48501 * 109.46687 * 214.57670 * 23 21 19 26 26 H 1.48503 * 109.47166 * 334.57275 * 23 21 19 27 27 H 1.08996 * 109.46921 * 299.99413 * 1 2 3 28 28 H 1.09007 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47411 * 59.99886 * 1 2 3 30 30 H 1.09000 * 109.46953 * 120.00289 * 2 1 3 31 31 H 1.09005 * 109.46836 * 240.00457 * 2 1 3 32 32 H 1.08998 * 109.47390 * 69.88571 * 5 3 2 33 33 H 1.09008 * 109.46860 * 189.88796 * 5 3 2 34 34 H 1.08997 * 109.46925 * 309.88101 * 5 3 2 35 35 H 1.08994 * 109.45712 * 338.93646 * 9 8 6 36 36 H 1.09000 * 109.45757 * 98.88665 * 9 8 6 37 37 H 1.09004 * 109.69621 * 186.67082 * 10 9 8 38 38 H 1.08998 * 109.64088 * 66.23231 * 10 9 8 39 39 H 1.08999 * 109.41867 * 305.75841 * 11 10 9 40 40 H 1.09006 * 109.41446 * 185.95964 * 11 10 9 41 41 H 1.08995 * 110.57779 * 325.32271 * 16 14 8 42 42 H 1.09009 * 110.56616 * 88.18825 * 16 14 8 43 43 H 1.09002 * 109.80779 * 136.67905 * 17 16 14 44 44 H 1.09001 * 109.81454 * 257.57919 * 17 16 14 45 45 H 0.97003 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4444 0.1238 7 8 4.1676 0.4238 -0.0705 8 7 4.1897 2.5802 0.4504 9 6 3.3855 3.7572 0.7532 10 6 4.0560 5.0022 0.1762 11 6 5.4986 5.0576 0.6813 12 6 6.2931 3.8829 0.1091 13 1 6.4081 3.9723 -0.9711 14 6 5.6312 2.5490 0.4706 15 1 5.9835 1.7864 -0.2239 16 6 6.1762 2.2415 1.8784 17 6 7.5676 2.9028 1.8848 18 7 7.6128 3.8593 0.7710 19 6 8.7007 4.6067 0.4063 20 1 8.7061 5.1259 -0.5407 21 6 9.7964 4.6970 1.2536 22 7 9.7430 4.1669 2.4572 23 14 11.3467 5.5708 0.6858 24 1 11.3138 6.9836 1.1417 25 1 12.5360 4.8925 1.2610 26 1 11.4228 5.5307 -0.7967 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 0.5565 2.2830 -1.3167 33 1 2.1424 3.0881 -1.3864 34 1 1.9182 1.4960 -2.1501 35 1 2.3943 3.6423 0.3147 36 1 3.2938 3.8661 1.8339 37 1 3.5193 5.8931 0.5024 38 1 4.0509 4.9497 -0.9125 39 1 5.5037 5.0027 1.7699 40 1 5.9576 5.9942 0.3645 41 1 5.5375 2.6856 2.6419 42 1 6.2629 1.1654 2.0289 43 1 7.7233 3.4265 2.8280 44 1 8.3381 2.1435 1.7512 45 1 10.5086 4.2303 3.0495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049342246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:44 Heat of formation + Delta-G solvation = -21.749211 kcal Electronic energy + Delta-G solvation = -23584.100295 eV Core-core repulsion = 20408.634542 eV Total energy + Delta-G solvation = -3175.465753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61637 -38.17187 -35.59993 -35.23273 -32.54574 -32.25832 -30.06554 -28.87830 -28.23711 -25.66364 -24.38876 -24.26197 -22.11037 -21.65441 -20.13145 -19.39464 -17.97685 -17.18150 -16.87367 -15.86346 -15.35730 -14.91520 -14.63981 -14.31273 -14.16499 -13.88624 -13.48355 -13.26651 -13.00619 -12.92428 -12.36113 -12.31716 -12.02925 -11.87238 -11.80826 -11.60926 -11.39728 -11.06604 -10.92444 -10.88868 -10.82067 -10.73851 -10.66141 -10.40878 -10.09049 -10.05739 -9.63924 -9.49260 -9.32161 -8.62345 -8.25327 -6.80510 -5.69500 -3.09246 2.81589 3.23524 3.39874 3.45768 3.47738 4.47303 4.49714 4.63332 4.82760 4.95241 5.13053 5.17995 5.22190 5.28901 5.32378 5.40114 5.47628 5.48919 5.56991 5.63198 5.68791 5.70796 5.75954 5.85766 5.91638 5.92503 6.03739 6.10536 6.16681 6.22703 6.27426 6.33196 6.40829 6.60375 6.63714 6.79488 7.04340 7.14389 7.47244 7.64385 7.72705 7.82553 8.27835 8.43353 9.20362 9.81232 10.48065 11.38915 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035894 B = 0.004324 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.880326 B = 6473.660983 C = 6817.199424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.111 4.111 4 H 0.092 0.908 5 C -0.146 4.146 6 C 0.507 3.493 7 O -0.541 6.541 8 N -0.587 5.587 9 C 0.103 3.897 10 C -0.132 4.132 11 C -0.129 4.129 12 C 0.160 3.840 13 H 0.053 0.947 14 C 0.136 3.864 15 H 0.088 0.912 16 C -0.147 4.147 17 C 0.170 3.830 18 N -0.593 5.593 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.028 0.972 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.990 -2.135 -3.832 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.110 0.890 5 C -0.203 4.203 6 C 0.295 3.705 7 O -0.418 6.418 8 N -0.318 5.318 9 C -0.020 4.020 10 C -0.171 4.171 11 C -0.169 4.169 12 C 0.052 3.948 13 H 0.071 0.929 14 C 0.032 3.968 15 H 0.106 0.894 16 C -0.186 4.186 17 C 0.045 3.955 18 N -0.318 5.318 19 C -0.357 4.357 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.372 -2.609 -3.825 18.947 hybrid contribution 0.906 0.601 -0.059 1.088 sum -17.466 -2.008 -3.884 18.005 Atomic orbital electron populations 1.21826 0.95640 1.01721 1.01751 1.21357 0.95144 0.94386 1.03441 1.21369 0.92448 0.99092 1.00376 0.88996 1.21873 1.01792 1.00772 0.95913 1.20763 0.90024 0.83315 0.76431 1.90676 1.68934 1.32063 1.50116 1.47080 1.06459 1.10504 1.67776 1.21565 0.94398 0.85664 1.00324 1.21792 0.98008 0.96479 1.00827 1.22087 0.92815 1.00758 1.01228 1.20939 0.86864 0.90988 0.96044 0.92934 1.21069 0.77799 0.99366 0.98575 0.89399 1.22924 0.99521 1.00378 0.95824 1.21147 0.90014 0.91158 0.93154 1.44479 1.06530 1.46583 1.34168 1.18984 0.92508 1.23463 1.00766 0.90654 1.24867 0.98942 1.00639 0.95699 1.69946 1.30057 1.49303 1.06943 0.86126 0.82914 0.78999 0.77855 1.21622 1.21657 1.20610 0.92802 0.92621 0.92514 0.91527 0.91087 0.91414 0.91693 0.91892 0.89803 0.92081 0.91171 0.91813 0.91916 0.91833 0.92509 0.92070 0.91748 0.95352 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.68 37.16 0.36 -0.81 16 2 C -0.11 -1.11 4.72 -26.73 -0.13 -1.24 16 3 C -0.11 -1.20 1.85 -91.77 -0.17 -1.37 16 4 H 0.09 0.84 7.04 -51.93 -0.37 0.47 16 5 C -0.15 -1.30 8.18 37.16 0.30 -1.00 16 6 C 0.51 7.83 6.78 -10.99 -0.07 7.75 16 7 O -0.54 -10.47 15.41 5.55 0.09 -10.38 16 8 N -0.59 -9.11 2.80 -167.77 -0.47 -9.58 16 9 C 0.10 1.25 5.48 -4.60 -0.03 1.23 16 10 C -0.13 -1.71 6.09 -26.90 -0.16 -1.87 16 11 C -0.13 -2.29 5.31 -26.80 -0.14 -2.43 16 12 C 0.16 3.30 3.29 -67.22 -0.22 3.08 16 13 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.14 2.62 2.69 -68.48 -0.18 2.44 16 15 H 0.09 1.88 7.16 -51.93 -0.37 1.51 16 16 C -0.15 -3.01 6.45 -25.63 -0.17 -3.17 16 17 C 0.17 4.23 5.50 -3.28 -0.02 4.21 16 18 N -0.59 -15.05 2.94 -163.75 -0.48 -15.53 16 19 C -0.23 -6.32 10.23 -15.06 -0.15 -6.48 16 20 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 21 C 0.00 -0.13 5.44 -17.43 -0.09 -0.22 16 22 N -0.92 -26.91 10.59 55.49 0.59 -26.32 16 23 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 0.39 6.80 -51.93 -0.35 0.04 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.07 0.46 7.08 -51.93 -0.37 0.09 16 33 H 0.06 0.58 6.42 -51.92 -0.33 0.25 16 34 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.08 0.78 4.26 -51.93 -0.22 0.55 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 43 H 0.06 1.77 6.83 -51.93 -0.35 1.41 16 44 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -31.40 339.67 -8.87 -40.27 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.81 Total: -0.74 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.88 Total: 0.11 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.36 Total: -51.44 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.40 -8.87 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049342246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.523 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds