Wall clock time and date at job start Tue Mar 31 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46879 * 2 1 4 4 H 1.09001 * 109.47411 * 55.00488 * 3 2 1 5 5 C 1.53001 * 109.47293 * 295.00394 * 3 2 1 6 6 C 1.50700 * 109.47306 * 175.00034 * 3 2 1 7 7 O 1.21285 * 119.99672 * 15.15912 * 6 3 2 8 8 N 1.34771 * 120.00217 * 195.15453 * 6 3 2 9 9 C 1.45733 * 117.76044 * 3.68463 * 8 6 3 10 10 C 1.52724 * 109.73270 * 218.79400 * 9 8 6 11 11 C 1.52942 * 108.59449 * 306.46544 * 10 9 8 12 12 C 1.52924 * 109.79504 * 65.86368 * 11 10 9 13 13 H 1.08996 * 111.26509 * 66.64312 * 12 11 10 14 14 C 1.44202 * 117.75730 * 183.95005 * 8 6 3 15 15 H 1.09001 * 109.22295 * 27.36989 * 14 8 6 16 16 C 1.54062 * 111.76084 * 266.47012 * 14 8 6 17 17 C 1.54052 * 103.74394 * 206.75057 * 16 14 8 18 18 N 1.46887 * 107.70864 * 17.13000 * 17 16 14 19 19 C 1.36938 * 125.57732 * 182.95660 * 18 17 16 20 20 H 1.08002 * 119.99254 * 167.33200 * 19 18 17 21 21 C 1.38808 * 120.00563 * 347.33857 * 19 18 17 22 22 N 1.31618 * 119.99704 * 353.80007 * 21 19 18 23 23 Si 1.86799 * 120.00003 * 173.80355 * 21 19 18 24 24 H 1.48492 * 109.47072 * 94.57605 * 23 21 19 25 25 H 1.48501 * 109.46687 * 214.57670 * 23 21 19 26 26 H 1.48503 * 109.47166 * 334.57275 * 23 21 19 27 27 H 1.08996 * 109.46921 * 299.99413 * 1 2 3 28 28 H 1.09007 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47411 * 59.99886 * 1 2 3 30 30 H 1.09000 * 109.46953 * 120.00289 * 2 1 3 31 31 H 1.09005 * 109.46836 * 240.00457 * 2 1 3 32 32 H 1.08998 * 109.47390 * 69.88571 * 5 3 2 33 33 H 1.09008 * 109.46860 * 189.88796 * 5 3 2 34 34 H 1.08997 * 109.46925 * 309.88101 * 5 3 2 35 35 H 1.08994 * 109.45712 * 338.93646 * 9 8 6 36 36 H 1.09000 * 109.45757 * 98.88665 * 9 8 6 37 37 H 1.09004 * 109.69621 * 186.67082 * 10 9 8 38 38 H 1.08998 * 109.64088 * 66.23231 * 10 9 8 39 39 H 1.08999 * 109.41867 * 305.75841 * 11 10 9 40 40 H 1.09006 * 109.41446 * 185.95964 * 11 10 9 41 41 H 1.08995 * 110.57779 * 325.32271 * 16 14 8 42 42 H 1.09009 * 110.56616 * 88.18825 * 16 14 8 43 43 H 1.09002 * 109.80779 * 136.67905 * 17 16 14 44 44 H 1.09001 * 109.81454 * 257.57919 * 17 16 14 45 45 H 0.97003 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4444 0.1238 7 8 4.1676 0.4238 -0.0705 8 7 4.1897 2.5802 0.4504 9 6 3.3855 3.7572 0.7532 10 6 4.0560 5.0022 0.1762 11 6 5.4986 5.0576 0.6813 12 6 6.2931 3.8829 0.1091 13 1 6.4081 3.9723 -0.9711 14 6 5.6312 2.5490 0.4706 15 1 5.9835 1.7864 -0.2239 16 6 6.1762 2.2415 1.8784 17 6 7.5676 2.9028 1.8848 18 7 7.6128 3.8593 0.7710 19 6 8.7007 4.6067 0.4063 20 1 8.7061 5.1259 -0.5407 21 6 9.7964 4.6970 1.2536 22 7 9.7430 4.1669 2.4572 23 14 11.3467 5.5708 0.6858 24 1 11.3138 6.9836 1.1417 25 1 12.5360 4.8925 1.2610 26 1 11.4228 5.5307 -0.7967 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 0.5565 2.2830 -1.3167 33 1 2.1424 3.0881 -1.3864 34 1 1.9182 1.4960 -2.1501 35 1 2.3943 3.6423 0.3147 36 1 3.2938 3.8661 1.8339 37 1 3.5193 5.8931 0.5024 38 1 4.0509 4.9497 -0.9125 39 1 5.5037 5.0027 1.7699 40 1 5.9576 5.9942 0.3645 41 1 5.5375 2.6856 2.6419 42 1 6.2629 1.1654 2.0289 43 1 7.7233 3.4265 2.8280 44 1 8.3381 2.1435 1.7512 45 1 10.5086 4.2303 3.0495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049342246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:43 Heat of formation + Delta-G solvation = -40.464010 kcal Electronic energy + Delta-G solvation = -23584.911830 eV Core-core repulsion = 20408.634542 eV Total energy + Delta-G solvation = -3176.277288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92364 -39.66145 -36.93785 -36.37919 -34.20910 -33.89162 -31.27770 -30.44896 -29.71148 -26.80888 -26.19240 -25.42866 -23.42441 -22.79688 -22.00586 -20.60014 -19.37668 -18.77620 -18.35846 -17.11612 -16.80415 -16.38316 -16.12856 -15.89088 -15.39314 -15.05178 -14.96260 -14.42831 -14.31552 -14.16110 -13.80797 -13.62285 -13.31173 -13.19647 -12.94809 -12.76624 -12.73716 -12.55281 -12.45462 -12.40045 -12.26379 -12.05722 -11.86013 -11.66691 -11.66040 -11.55709 -11.49404 -11.17646 -10.75685 -10.57280 -9.60506 -8.88902 -7.84612 -5.26967 1.44468 1.46615 1.55742 1.62394 1.99574 2.48670 3.30167 3.43104 3.58840 3.82699 3.85398 3.93094 4.00112 4.05130 4.10982 4.14423 4.31154 4.41416 4.56898 4.57426 4.59914 4.64728 4.65705 4.76523 4.80892 4.83578 4.93546 5.00424 5.04737 5.07373 5.19580 5.21143 5.25302 5.34644 5.36885 5.43075 5.51381 5.54032 5.59770 5.71060 5.73765 6.19132 6.43990 7.05656 7.21069 7.72959 8.39252 9.22870 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035894 B = 0.004324 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.880326 B = 6473.660983 C = 6817.199424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.102 4.102 4 H 0.122 0.878 5 C -0.144 4.144 6 C 0.500 3.500 7 O -0.589 6.589 8 N -0.587 5.587 9 C 0.098 3.902 10 C -0.121 4.121 11 C -0.119 4.119 12 C 0.156 3.844 13 H 0.048 0.952 14 C 0.154 3.846 15 H 0.059 0.941 16 C -0.132 4.132 17 C 0.182 3.818 18 N -0.614 5.614 19 C -0.240 4.240 20 H 0.081 0.919 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.978 3.022 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.269 1.269 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.034 0.966 44 H -0.011 1.011 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.420 -0.616 -4.727 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.123 4.123 4 H 0.140 0.860 5 C -0.201 4.201 6 C 0.290 3.710 7 O -0.469 6.469 8 N -0.318 5.318 9 C -0.023 4.023 10 C -0.160 4.160 11 C -0.159 4.159 12 C 0.049 3.951 13 H 0.066 0.934 14 C 0.048 3.952 15 H 0.077 0.923 16 C -0.171 4.171 17 C 0.057 3.943 18 N -0.338 5.338 19 C -0.369 4.369 20 H 0.098 0.902 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.806 3.194 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.194 1.194 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.007 0.993 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.865 -1.061 -4.745 22.399 hybrid contribution 1.975 0.080 0.188 1.986 sum -19.890 -0.981 -4.557 20.429 Atomic orbital electron populations 1.21784 0.92897 1.02434 1.03104 1.21349 0.97394 0.93996 1.01651 1.21460 0.88261 0.99890 1.02723 0.86031 1.21910 1.03923 1.00283 0.93992 1.21767 0.92089 0.82240 0.74862 1.90660 1.70380 1.33871 1.52030 1.47155 1.04722 1.12184 1.67716 1.21922 0.95392 0.83595 1.01417 1.21758 0.94416 0.98457 1.01322 1.21876 0.95942 0.98193 0.99909 1.21131 0.85427 0.93042 0.95503 0.93384 1.20561 0.80637 0.97499 0.96540 0.92323 1.22726 0.97175 0.99771 0.97451 1.20833 0.91533 0.90036 0.91941 1.44727 1.08208 1.46407 1.34499 1.19354 0.93517 1.23102 1.00916 0.90167 1.25713 1.02053 1.01905 0.95916 1.70160 1.30505 1.50856 1.08038 0.85072 0.78686 0.77781 0.77829 1.20920 1.22249 1.19413 0.91430 0.92420 0.91032 0.93437 0.93019 0.88113 0.91215 0.93144 0.85631 0.91055 0.87647 0.90906 0.93669 0.93207 0.90875 0.92303 0.94749 0.99298 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.68 71.98 0.70 -1.03 16 2 C -0.11 -2.03 4.72 30.59 0.14 -1.88 16 3 C -0.10 -1.86 1.85 -11.54 -0.02 -1.89 16 4 H 0.12 1.55 7.04 -2.39 -0.02 1.54 16 5 C -0.14 -1.94 8.18 71.98 0.59 -1.35 16 6 C 0.50 14.75 6.78 87.66 0.59 15.34 16 7 O -0.59 -23.19 15.41 -3.05 -0.05 -23.24 16 8 N -0.59 -17.20 2.80 -803.09 -2.25 -19.45 16 9 C 0.10 1.96 5.48 86.43 0.47 2.43 16 10 C -0.12 -2.65 6.09 30.48 0.19 -2.47 16 11 C -0.12 -4.11 5.31 30.55 0.16 -3.95 16 12 C 0.16 6.49 3.29 44.82 0.15 6.64 16 13 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 14 C 0.15 5.99 2.69 45.86 0.12 6.11 16 15 H 0.06 2.62 7.16 -2.39 -0.02 2.61 16 16 C -0.13 -5.55 6.45 31.31 0.20 -5.35 16 17 C 0.18 9.59 5.50 86.66 0.48 10.07 16 18 N -0.61 -32.34 2.94 -671.98 -1.97 -34.31 16 19 C -0.24 -13.64 10.23 84.03 0.86 -12.78 16 20 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 21 C -0.06 -3.61 5.44 84.86 0.46 -3.14 16 22 N -0.95 -58.10 10.59 21.65 0.23 -57.87 16 23 Si 0.98 46.39 29.56 68.60 2.03 48.41 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.66 6.80 -2.39 -0.02 0.64 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.17 8.06 -2.38 -0.02 1.15 16 32 H 0.10 0.76 7.08 -2.39 -0.02 0.74 16 33 H 0.07 0.90 6.42 -2.38 -0.02 0.89 16 34 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 35 H 0.13 1.55 4.26 -2.39 -0.01 1.54 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.04 1.71 8.02 -2.39 -0.02 1.69 16 40 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.03 2.00 6.83 -2.39 -0.02 1.99 16 44 H -0.01 -0.66 8.07 -2.39 -0.02 -0.68 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -73.80 339.67 4.03 -69.77 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.95 Total: 9.93 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.09 Total: 6.75 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.99 Total: -111.63 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.80 4.03 -69.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049342246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.310 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds