Wall clock time and date at job start Tue Mar 31 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47539 * 2 1 4 4 H 1.08994 * 109.47002 * 305.00225 * 3 2 1 5 5 C 1.53002 * 109.46974 * 64.99844 * 3 2 1 6 6 C 1.50696 * 109.47237 * 184.99723 * 3 2 1 7 7 O 1.21283 * 120.00036 * 274.66809 * 6 3 2 8 8 N 1.34776 * 119.99935 * 94.67389 * 6 3 2 9 9 C 1.46802 * 119.52174 * 354.52614 * 8 6 3 10 10 C 1.53478 * 107.54117 * 231.99053 * 9 8 6 11 11 C 1.52385 * 108.83720 * 302.40559 * 10 9 8 12 12 C 1.52957 * 111.30829 * 62.90804 * 11 10 9 13 13 H 1.08998 * 111.92002 * 71.05263 * 12 11 10 14 14 C 1.55031 * 107.08364 * 194.96586 * 12 11 10 15 15 N 1.47106 * 107.12377 * 92.70204 * 14 12 11 16 16 C 1.36936 * 125.64351 * 180.15967 * 15 14 12 17 17 H 1.08000 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99517 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99761 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47302 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47440 * 119.99914 * 20 18 16 23 23 H 1.48501 * 109.47147 * 239.99883 * 20 18 16 24 24 C 1.48104 * 108.91177 * 0.55388 * 15 14 12 25 25 C 1.45015 * 119.52360 * 174.50890 * 8 6 3 26 26 H 1.08992 * 109.86952 * 12.08062 * 25 8 6 27 27 H 1.08997 * 109.47628 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47249 * 299.99886 * 1 2 3 29 29 H 1.09003 * 109.47039 * 60.00042 * 1 2 3 30 30 H 1.09002 * 109.46955 * 239.99665 * 2 1 3 31 31 H 1.09003 * 109.47039 * 119.99958 * 2 1 3 32 32 H 1.09001 * 109.46902 * 64.89677 * 5 3 2 33 33 H 1.08999 * 109.47154 * 184.89548 * 5 3 2 34 34 H 1.08997 * 109.47071 * 304.89730 * 5 3 2 35 35 H 1.09001 * 109.84374 * 351.49565 * 9 8 6 36 36 H 1.08997 * 109.84553 * 112.48085 * 9 8 6 37 37 H 1.09005 * 109.67989 * 61.45809 * 10 9 8 38 38 H 1.08998 * 109.68218 * 182.01189 * 10 9 8 39 39 H 1.09007 * 108.43958 * 302.77154 * 11 10 9 40 40 H 1.09005 * 109.51479 * 183.75115 * 11 10 9 41 41 H 1.09006 * 109.90444 * 212.06963 * 14 12 11 42 42 H 1.08997 * 109.90936 * 333.32876 * 14 12 11 43 43 H 0.97003 * 119.99895 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.23477 * 264.31689 * 24 15 14 45 45 H 1.08997 * 110.85620 * 141.63453 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.2322 1.3290 0.8668 8 7 4.1181 1.5738 -1.3352 9 6 3.2769 1.5912 -2.5382 10 6 3.8373 0.5435 -3.5097 11 6 5.2945 0.8766 -3.8056 12 6 6.1506 0.7981 -2.5404 13 1 6.2883 -0.2299 -2.2054 14 6 7.4923 1.5088 -2.8535 15 7 7.3465 2.9123 -2.4374 16 6 8.3081 3.8810 -2.5467 17 1 9.2725 3.6394 -2.9685 18 6 8.0436 5.1733 -2.1144 19 7 6.8688 5.4673 -1.5990 20 14 9.3556 6.4947 -2.2628 21 1 10.5792 5.9114 -2.8693 22 1 8.8535 7.5965 -3.1224 23 1 9.6774 7.0264 -0.9141 24 6 5.9919 3.1068 -1.8711 25 6 5.5600 1.6944 -1.4316 26 1 6.0172 1.4483 -0.4732 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1394 1.6407 2.1428 33 1 1.9221 3.1775 1.2715 34 1 0.5561 2.0486 1.4392 35 1 2.2495 1.3395 -2.2750 36 1 3.3104 2.5784 -2.9990 37 1 3.7866 -0.4449 -3.0529 38 1 3.2580 0.5520 -4.4330 39 1 5.3421 1.8884 -4.2083 40 1 5.6846 0.1782 -4.5461 41 1 8.3010 1.0381 -2.2943 42 1 7.6985 1.4582 -3.9226 43 1 6.6838 6.3705 -1.2972 44 1 5.3157 3.4914 -2.6347 45 1 6.0225 3.7796 -1.0142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049979690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:47 Heat of formation + Delta-G solvation = -40.110546 kcal Electronic energy + Delta-G solvation = -23724.508814 eV Core-core repulsion = 20548.246854 eV Total energy + Delta-G solvation = -3176.261960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79330 -39.69390 -36.88305 -36.39905 -34.49863 -33.46356 -31.24091 -30.50833 -29.12414 -27.25701 -26.39419 -25.26626 -23.46029 -22.73120 -21.87503 -20.66029 -19.22461 -18.94582 -18.55776 -17.14383 -16.71186 -16.24418 -16.02481 -15.80073 -15.31665 -15.12122 -14.70791 -14.63908 -14.35932 -14.10791 -13.78873 -13.55539 -13.49293 -13.19079 -13.10185 -12.95809 -12.82744 -12.69981 -12.41734 -12.32077 -12.10204 -12.07330 -11.81260 -11.72126 -11.58671 -11.52980 -11.43048 -11.17975 -10.77774 -10.59023 -9.55637 -8.91678 -7.81677 -5.26520 1.42892 1.45024 1.55258 1.61924 2.03004 2.47119 3.29292 3.45225 3.67176 3.70306 3.85867 3.93825 3.95967 4.03133 4.07696 4.17007 4.31004 4.50195 4.51983 4.53748 4.59027 4.63471 4.71907 4.74013 4.84265 4.90231 4.92572 4.95498 5.07498 5.10645 5.17322 5.17880 5.20079 5.29132 5.37002 5.38893 5.47439 5.51430 5.54243 5.64222 5.79004 6.20790 6.50430 7.03503 7.22553 7.71805 8.36115 9.20924 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.005206 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.390862 B = 5376.835546 C = 6112.947380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.104 4.104 4 H 0.114 0.886 5 C -0.137 4.137 6 C 0.504 3.496 7 O -0.595 6.595 8 N -0.590 5.590 9 C 0.096 3.904 10 C -0.121 4.121 11 C -0.107 4.107 12 C -0.093 4.093 13 H 0.099 0.901 14 C 0.134 3.866 15 N -0.626 5.626 16 C -0.239 4.239 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.951 5.951 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.289 1.289 23 H -0.294 1.294 24 C 0.174 3.826 25 C 0.127 3.873 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.020 0.980 42 H 0.040 0.960 43 H 0.245 0.755 44 H -0.001 1.001 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 -12.676 -3.316 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.125 4.125 4 H 0.132 0.868 5 C -0.195 4.195 6 C 0.294 3.706 7 O -0.476 6.476 8 N -0.320 5.320 9 C -0.025 4.025 10 C -0.158 4.158 11 C -0.144 4.144 12 C -0.112 4.112 13 H 0.117 0.883 14 C 0.009 3.991 15 N -0.352 5.352 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.810 3.190 21 H -0.188 1.188 22 H -0.216 1.216 23 H -0.222 1.222 24 C 0.048 3.952 25 C 0.021 3.979 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.141 0.859 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.038 0.962 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.017 0.983 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.953 -12.541 -2.811 19.718 hybrid contribution 1.338 1.325 0.289 1.905 sum -13.616 -11.216 -2.522 17.820 Atomic orbital electron populations 1.21804 0.92695 1.02848 1.02999 1.21445 0.98108 0.92350 1.02594 1.21479 0.88472 1.00656 1.01845 0.86766 1.21739 1.02916 0.99349 0.95462 1.21661 0.92402 0.74483 0.82045 1.90635 1.66562 1.51961 1.38454 1.47570 1.06052 1.70965 1.07459 1.22221 0.95421 1.00157 0.84722 1.21800 0.95174 0.98670 1.00193 1.21392 0.95670 1.01633 0.95736 1.22385 0.94866 0.98239 0.95748 0.88333 1.21724 0.95689 0.84262 0.97448 1.44839 1.12307 1.06002 1.72090 1.19541 0.94000 0.89150 1.34141 0.89762 1.25685 0.99342 0.99659 1.01375 1.70130 1.22757 1.18888 1.48309 0.84949 0.78463 0.78722 0.76838 1.18784 1.21566 1.22166 1.21600 0.84621 0.92557 0.96454 1.21482 0.80952 0.96964 0.98525 0.92407 0.91403 0.91984 0.91078 0.90758 0.92775 0.93465 0.93992 0.88339 0.85934 0.92347 0.90420 0.87447 0.93988 0.89639 0.96234 0.94248 0.94492 0.98285 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.01 16 2 C -0.11 -1.90 5.23 30.59 0.16 -1.74 16 3 C -0.10 -2.42 1.89 -11.54 -0.02 -2.44 16 4 H 0.11 2.12 6.17 -2.39 -0.01 2.11 16 5 C -0.14 -3.27 8.80 71.98 0.63 -2.64 16 6 C 0.50 17.70 6.64 87.66 0.58 18.28 16 7 O -0.60 -26.90 15.48 -3.04 -0.05 -26.95 16 8 N -0.59 -20.25 2.73 -795.01 -2.17 -22.42 16 9 C 0.10 2.34 5.88 86.48 0.51 2.85 16 10 C -0.12 -2.46 6.09 30.55 0.19 -2.28 16 11 C -0.11 -2.99 4.64 30.38 0.14 -2.84 16 12 C -0.09 -3.25 3.62 -9.66 -0.03 -3.29 16 13 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 14 C 0.13 5.72 6.61 86.96 0.57 6.29 16 15 N -0.63 -33.76 3.41 -690.23 -2.36 -36.11 16 16 C -0.24 -13.94 10.27 84.03 0.86 -13.08 16 17 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 18 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 19 N -0.95 -59.45 10.10 21.65 0.22 -59.24 16 20 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 24 C 0.17 9.15 5.05 86.44 0.44 9.58 16 25 C 0.13 5.40 3.03 46.09 0.14 5.54 16 26 H 0.06 2.88 6.92 -2.39 -0.02 2.86 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.71 6.46 -2.38 -0.02 0.69 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.20 7.99 -2.39 -0.02 1.18 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.62 6.35 -2.39 -0.02 1.60 16 35 H 0.12 2.02 5.31 -2.39 -0.01 2.01 16 36 H 0.06 1.62 7.60 -2.39 -0.02 1.60 16 37 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.44 7.26 -2.38 -0.02 1.42 16 40 H 0.09 1.97 8.14 -2.38 -0.02 1.96 16 41 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.04 1.59 7.74 -2.39 -0.02 1.57 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.00 -0.04 6.96 -2.38 -0.02 -0.06 16 45 H 0.05 3.33 5.98 -2.39 -0.01 3.32 16 Total: -1.00 -76.85 337.35 3.96 -72.90 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.96 Total: 12.91 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 5.33 Total: 9.66 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -4.31 Total: -117.77 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -76.85 3.96 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049979690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.786 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds