Wall clock time and date at job start Tue Mar 31 2020 03:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47155 * 2 1 4 4 H 1.08995 * 109.47488 * 55.00099 * 3 2 1 5 5 C 1.52999 * 109.47390 * 294.99705 * 3 2 1 6 6 C 1.50713 * 109.46967 * 174.99694 * 3 2 1 7 7 O 1.21279 * 119.99681 * 23.75872 * 6 3 2 8 8 N 1.34773 * 119.99929 * 203.75239 * 6 3 2 9 9 C 1.44508 * 116.63081 * 3.62781 * 8 6 3 10 10 C 1.51632 * 112.65076 * 154.60231 * 9 8 6 11 11 C 1.51322 * 111.98391 * 42.75843 * 10 9 8 12 12 C 1.50711 * 113.54358 * 304.60875 * 11 10 9 13 13 H 1.09005 * 109.33527 * 169.06595 * 12 11 10 14 14 C 1.54177 * 110.50847 * 289.39239 * 12 11 10 15 15 N 1.46927 * 106.26296 * 151.09571 * 14 12 11 16 16 C 1.36943 * 125.37425 * 162.12965 * 15 14 12 17 17 H 1.07993 * 120.00310 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99511 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00007 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99683 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46985 * 119.99611 * 20 18 16 23 23 H 1.48491 * 109.46858 * 239.99869 * 20 18 16 24 24 C 1.46816 * 109.24755 * 342.15182 * 15 14 12 25 25 C 1.44104 * 116.63151 * 183.36991 * 8 6 3 26 26 H 1.09004 * 109.10561 * 73.86310 * 25 8 6 27 27 H 1.08997 * 109.47328 * 300.00217 * 1 2 3 28 28 H 1.09003 * 109.46987 * 60.00042 * 1 2 3 29 29 H 1.09002 * 109.47434 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47004 * 239.99607 * 2 1 3 31 31 H 1.09000 * 109.46849 * 120.00473 * 2 1 3 32 32 H 1.09004 * 109.47265 * 181.87118 * 5 3 2 33 33 H 1.09000 * 109.47065 * 301.87126 * 5 3 2 34 34 H 1.08997 * 109.46801 * 61.87253 * 5 3 2 35 35 H 1.09007 * 108.84694 * 275.41585 * 9 8 6 36 36 H 1.08995 * 108.85106 * 33.78100 * 9 8 6 37 37 H 1.09006 * 108.97614 * 163.40397 * 10 9 8 38 38 H 1.08996 * 108.97839 * 282.10927 * 10 9 8 39 39 H 1.08995 * 108.67226 * 65.66066 * 11 10 9 40 40 H 1.09003 * 108.67003 * 183.69557 * 11 10 9 41 41 H 1.08999 * 110.09857 * 270.29813 * 14 12 11 42 42 H 1.09003 * 110.09766 * 31.89687 * 14 12 11 43 43 H 0.97003 * 119.99263 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.83875 * 120.40297 * 24 15 14 45 45 H 1.09007 * 109.83812 * 241.30515 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5420 1.4442 0.1239 7 8 4.1799 0.4717 -0.2198 8 7 4.1762 2.5265 0.6166 9 6 3.3416 3.6119 1.0786 10 6 4.0239 4.4673 2.1283 11 6 5.4677 4.7521 1.7760 12 6 6.2844 3.5092 1.5324 13 1 7.2453 3.7877 1.0996 14 6 6.5218 2.7512 2.8539 15 7 6.6561 1.3325 2.4961 16 6 7.2088 0.3635 3.2903 17 1 7.5903 0.6191 4.2678 18 6 7.2796 -0.9472 2.8385 19 7 6.8151 -1.2586 1.6471 20 14 8.0343 -2.2690 3.9216 21 1 8.4788 -1.6646 5.2032 22 1 7.0233 -3.3219 4.1948 23 1 9.2010 -2.8709 3.2278 24 6 6.1047 1.1179 1.1525 25 6 5.6164 2.4792 0.6335 26 1 5.9894 2.6039 -0.3831 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0271 3.1436 -1.3217 33 1 2.0424 1.5685 -2.1505 34 1 0.5482 2.1549 -1.3812 35 1 3.0792 4.2411 0.2279 36 1 2.4270 3.1972 1.5024 37 1 3.4880 5.4122 2.2188 38 1 3.9884 3.9484 3.0862 39 1 5.4926 5.3677 0.8769 40 1 5.9225 5.3115 2.5936 41 1 7.4361 3.1056 3.3299 42 1 5.6726 2.8899 3.5230 43 1 6.8644 -2.1746 1.3316 44 1 6.8784 0.7237 0.4937 45 1 5.2700 0.4186 1.2025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049979691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:53 Heat of formation + Delta-G solvation = -3.780313 kcal Electronic energy + Delta-G solvation = -24113.747263 eV Core-core repulsion = 20939.060700 eV Total energy + Delta-G solvation = -3174.686563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60924 -37.95002 -35.55636 -34.95966 -33.08766 -31.97442 -29.93007 -29.29567 -27.13939 -25.57046 -25.11281 -23.88534 -22.32111 -21.52703 -20.16153 -18.90797 -17.77838 -17.13852 -16.27494 -15.80530 -15.36877 -14.76192 -14.47956 -14.27795 -13.94081 -13.93795 -13.66092 -13.20398 -13.18901 -12.48303 -12.43014 -12.22150 -12.11715 -11.73963 -11.44417 -11.40480 -11.23743 -11.01783 -10.89712 -10.75567 -10.68140 -10.52884 -10.38353 -10.19372 -10.14784 -9.93685 -9.80984 -9.54857 -8.77403 -8.31309 -7.82025 -6.59329 -5.50256 -2.86865 3.22367 3.48197 3.52561 3.54576 3.56021 4.62138 4.73856 4.85279 4.91333 4.96281 5.11919 5.17119 5.27064 5.38113 5.43988 5.46667 5.57909 5.61423 5.65819 5.72771 5.77210 5.87805 5.92065 5.95663 6.00534 6.04655 6.07073 6.14152 6.18398 6.27432 6.29220 6.40697 6.51934 6.56113 6.66940 6.79436 6.87612 7.23878 7.70934 7.89520 7.96827 8.24555 8.50848 8.87371 9.39585 10.00731 10.65711 11.57463 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.007079 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.241916 B = 3954.339028 C = 5319.295906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.113 4.113 4 H 0.088 0.912 5 C -0.138 4.138 6 C 0.496 3.504 7 O -0.498 6.498 8 N -0.590 5.590 9 C 0.117 3.883 10 C -0.128 4.128 11 C -0.101 4.101 12 C -0.103 4.103 13 H 0.078 0.922 14 C 0.143 3.857 15 N -0.608 5.608 16 C -0.234 4.234 17 H 0.075 0.925 18 C -0.007 4.007 19 N -0.905 5.905 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.162 3.838 25 C 0.131 3.869 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.014 0.986 43 H 0.250 0.750 44 H 0.048 0.952 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.945 12.234 -3.726 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.135 4.135 4 H 0.106 0.894 5 C -0.196 4.196 6 C 0.282 3.718 7 O -0.371 6.371 8 N -0.325 5.325 9 C -0.007 4.007 10 C -0.166 4.166 11 C -0.139 4.139 12 C -0.122 4.122 13 H 0.096 0.904 14 C 0.016 3.984 15 N -0.335 5.335 16 C -0.362 4.362 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.551 5.551 20 Si 0.737 3.263 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.038 3.962 25 C 0.027 3.973 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.031 0.969 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.504 11.514 -3.928 16.744 hybrid contribution 0.484 -0.570 0.659 0.997 sum -11.020 10.944 -3.269 15.871 Atomic orbital electron populations 1.21822 0.95929 1.01584 1.01417 1.21359 0.94849 0.94582 1.03811 1.21442 0.93154 0.98920 0.99942 0.89367 1.21732 1.01449 1.00226 0.96190 1.20649 0.89803 0.82700 0.78627 1.90803 1.67115 1.32694 1.46508 1.46686 1.06148 1.17139 1.62486 1.20818 0.93677 0.89196 0.97005 1.21126 0.96405 0.99557 0.99530 1.20474 0.94834 0.97191 1.01369 1.21309 0.98658 0.94221 0.98048 0.90376 1.21361 0.97434 0.86294 0.93312 1.44436 1.70951 1.02099 1.15986 1.19006 1.32506 0.87364 0.97364 0.90738 1.24850 1.01322 0.97199 0.97010 1.70046 1.50222 1.17674 1.17189 0.86136 0.78464 0.82262 0.79445 1.20668 1.21890 1.21852 1.21882 0.99064 0.90127 0.85123 1.21079 0.78392 0.99562 0.98219 0.92891 0.92983 0.92704 0.92700 0.90918 0.91328 0.92468 0.92051 0.91681 0.93048 0.90966 0.90968 0.91216 0.92576 0.91645 0.95176 0.96883 0.93885 0.93355 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.11 -1.54 4.83 -26.73 -0.13 -1.67 16 3 C -0.11 -1.56 1.99 -91.77 -0.18 -1.75 16 4 H 0.09 1.06 5.82 -51.93 -0.30 0.76 16 5 C -0.14 -1.53 8.84 37.16 0.33 -1.20 16 6 C 0.50 9.34 6.15 -10.98 -0.07 9.27 16 7 O -0.50 -11.90 12.99 5.56 0.07 -11.83 16 8 N -0.59 -10.41 3.09 -170.33 -0.53 -10.94 16 9 C 0.12 1.51 5.41 -5.80 -0.03 1.47 16 10 C -0.13 -1.57 5.83 -28.27 -0.16 -1.73 16 11 C -0.10 -1.34 5.17 -28.72 -0.15 -1.49 16 12 C -0.10 -1.84 3.05 -91.58 -0.28 -2.12 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C 0.14 3.08 6.65 -3.19 -0.02 3.06 16 15 N -0.61 -16.50 3.39 -171.51 -0.58 -17.09 16 16 C -0.23 -6.89 10.26 -15.05 -0.15 -7.05 16 17 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 19 N -0.90 -28.50 10.26 55.49 0.57 -27.93 16 20 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 C 0.16 4.31 4.13 -3.53 -0.01 4.29 16 25 C 0.13 2.69 3.17 -69.30 -0.22 2.47 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.51 6.61 -51.93 -0.34 0.16 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.59 7.10 -51.93 -0.37 0.22 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.57 6.66 -51.93 -0.35 0.23 16 35 H 0.05 0.56 7.38 -51.92 -0.38 0.18 16 36 H 0.07 0.84 5.64 -51.93 -0.29 0.55 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.96 7.00 -51.93 -0.36 0.60 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.80 8.10 -51.93 -0.42 0.37 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.01 0.29 6.69 -51.93 -0.35 -0.06 16 43 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.05 1.47 7.37 -51.93 -0.38 1.08 16 45 H 0.09 2.70 4.39 -52.01 -0.23 2.47 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -34.54 331.43 -8.86 -43.40 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.55 Total: -0.84 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.82 Total: 2.03 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.54 Total: -55.95 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.54 -8.86 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049979691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.622 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds