Wall clock time and date at job start Tue Mar 31 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47155 * 2 1 4 4 H 1.08995 * 109.47488 * 55.00099 * 3 2 1 5 5 C 1.52999 * 109.47390 * 294.99705 * 3 2 1 6 6 C 1.50713 * 109.46967 * 174.99694 * 3 2 1 7 7 O 1.21279 * 119.99681 * 23.75872 * 6 3 2 8 8 N 1.34773 * 119.99929 * 203.75239 * 6 3 2 9 9 C 1.44508 * 116.63081 * 3.62781 * 8 6 3 10 10 C 1.51632 * 112.65076 * 154.60231 * 9 8 6 11 11 C 1.51322 * 111.98391 * 42.75843 * 10 9 8 12 12 C 1.50711 * 113.54358 * 304.60875 * 11 10 9 13 13 H 1.09005 * 109.33527 * 169.06595 * 12 11 10 14 14 C 1.54177 * 110.50847 * 289.39239 * 12 11 10 15 15 N 1.46927 * 106.26296 * 151.09571 * 14 12 11 16 16 C 1.36943 * 125.37425 * 162.12965 * 15 14 12 17 17 H 1.07993 * 120.00310 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99511 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00007 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99683 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46985 * 119.99611 * 20 18 16 23 23 H 1.48491 * 109.46858 * 239.99869 * 20 18 16 24 24 C 1.46816 * 109.24755 * 342.15182 * 15 14 12 25 25 C 1.44104 * 116.63151 * 183.36991 * 8 6 3 26 26 H 1.09004 * 109.10561 * 73.86310 * 25 8 6 27 27 H 1.08997 * 109.47328 * 300.00217 * 1 2 3 28 28 H 1.09003 * 109.46987 * 60.00042 * 1 2 3 29 29 H 1.09002 * 109.47434 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47004 * 239.99607 * 2 1 3 31 31 H 1.09000 * 109.46849 * 120.00473 * 2 1 3 32 32 H 1.09004 * 109.47265 * 181.87118 * 5 3 2 33 33 H 1.09000 * 109.47065 * 301.87126 * 5 3 2 34 34 H 1.08997 * 109.46801 * 61.87253 * 5 3 2 35 35 H 1.09007 * 108.84694 * 275.41585 * 9 8 6 36 36 H 1.08995 * 108.85106 * 33.78100 * 9 8 6 37 37 H 1.09006 * 108.97614 * 163.40397 * 10 9 8 38 38 H 1.08996 * 108.97839 * 282.10927 * 10 9 8 39 39 H 1.08995 * 108.67226 * 65.66066 * 11 10 9 40 40 H 1.09003 * 108.67003 * 183.69557 * 11 10 9 41 41 H 1.08999 * 110.09857 * 270.29813 * 14 12 11 42 42 H 1.09003 * 110.09766 * 31.89687 * 14 12 11 43 43 H 0.97003 * 119.99263 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.83875 * 120.40297 * 24 15 14 45 45 H 1.09007 * 109.83812 * 241.30515 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5420 1.4442 0.1239 7 8 4.1799 0.4717 -0.2198 8 7 4.1762 2.5265 0.6166 9 6 3.3416 3.6119 1.0786 10 6 4.0239 4.4673 2.1283 11 6 5.4677 4.7521 1.7760 12 6 6.2844 3.5092 1.5324 13 1 7.2453 3.7877 1.0996 14 6 6.5218 2.7512 2.8539 15 7 6.6561 1.3325 2.4961 16 6 7.2088 0.3635 3.2903 17 1 7.5903 0.6191 4.2678 18 6 7.2796 -0.9472 2.8385 19 7 6.8151 -1.2586 1.6471 20 14 8.0343 -2.2690 3.9216 21 1 8.4788 -1.6646 5.2032 22 1 7.0233 -3.3219 4.1948 23 1 9.2010 -2.8709 3.2278 24 6 6.1047 1.1179 1.1525 25 6 5.6164 2.4792 0.6335 26 1 5.9894 2.6039 -0.3831 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0271 3.1436 -1.3217 33 1 2.0424 1.5685 -2.1505 34 1 0.5482 2.1549 -1.3812 35 1 3.0792 4.2411 0.2279 36 1 2.4270 3.1972 1.5024 37 1 3.4880 5.4122 2.2188 38 1 3.9884 3.9484 3.0862 39 1 5.4926 5.3677 0.8769 40 1 5.9225 5.3115 2.5936 41 1 7.4361 3.1056 3.3299 42 1 5.6726 2.8899 3.5230 43 1 6.8644 -2.1746 1.3316 44 1 6.8784 0.7237 0.4937 45 1 5.2700 0.4186 1.2025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049979691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:52 Heat of formation + Delta-G solvation = -27.105465 kcal Electronic energy + Delta-G solvation = -24114.758718 eV Core-core repulsion = 20939.060700 eV Total energy + Delta-G solvation = -3175.698018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.06395 -39.45033 -37.09922 -36.30322 -34.64214 -33.73872 -31.58855 -30.52763 -28.76307 -27.34703 -26.28607 -25.38240 -23.63226 -23.05459 -21.86465 -20.21435 -19.29441 -18.82048 -17.88974 -17.27520 -17.02484 -16.34536 -15.80770 -15.71998 -15.58014 -15.26737 -15.06878 -14.46334 -14.32531 -14.04485 -13.87895 -13.70059 -13.35061 -13.04066 -12.97936 -12.90999 -12.69405 -12.56546 -12.49691 -12.31331 -12.06358 -11.95834 -11.80368 -11.69712 -11.57739 -11.41966 -11.38818 -11.32127 -10.77024 -10.11527 -9.34492 -8.80826 -7.78475 -5.18926 1.38950 1.41971 1.52310 1.79200 2.19363 2.47742 3.33774 3.49874 3.69210 3.77325 3.81953 3.87219 4.01487 4.06241 4.09740 4.11368 4.33592 4.51654 4.60056 4.61464 4.64267 4.70119 4.72394 4.81609 4.85598 4.91971 4.97479 5.00613 5.06731 5.14297 5.17399 5.20627 5.22767 5.38211 5.41553 5.44008 5.48805 5.50711 5.56431 5.85628 6.11015 6.29459 6.59152 7.09809 7.43746 7.82507 8.44767 9.26917 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.007079 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.241916 B = 3954.339028 C = 5319.295906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.102 4.102 4 H 0.117 0.883 5 C -0.131 4.131 6 C 0.481 3.519 7 O -0.565 6.565 8 N -0.589 5.589 9 C 0.102 3.898 10 C -0.126 4.126 11 C -0.097 4.097 12 C -0.089 4.089 13 H 0.080 0.920 14 C 0.136 3.864 15 N -0.631 5.631 16 C -0.247 4.247 17 H 0.083 0.917 18 C -0.072 4.072 19 N -0.940 5.940 20 Si 0.978 3.022 21 H -0.260 1.260 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.175 3.825 25 C 0.143 3.857 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.022 0.978 43 H 0.240 0.760 44 H -0.011 1.011 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 15.837 -2.778 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.135 0.865 5 C -0.189 4.189 6 C 0.270 3.730 7 O -0.443 6.443 8 N -0.322 5.322 9 C -0.019 4.019 10 C -0.164 4.164 11 C -0.135 4.135 12 C -0.109 4.109 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.358 5.358 16 C -0.376 4.376 17 H 0.101 0.899 18 C -0.265 4.265 19 N -0.588 5.588 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.222 1.222 23 H -0.219 1.219 24 C 0.050 3.950 25 C 0.038 3.962 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.050 0.950 44 H 0.007 0.993 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.803 15.205 -2.943 20.746 hybrid contribution 1.220 -1.679 0.380 2.110 sum -12.583 13.526 -2.563 18.651 Atomic orbital electron populations 1.21765 0.92290 1.02387 1.03282 1.21341 0.97861 0.94706 1.00811 1.21486 0.88950 0.99037 1.02818 0.86507 1.21738 1.03530 1.00223 0.93380 1.21749 0.92075 0.81917 0.77263 1.90786 1.68932 1.35182 1.49428 1.46811 1.05075 1.18411 1.61879 1.21304 0.93374 0.88314 0.98882 1.21195 0.95985 1.01271 0.97936 1.20506 0.94927 0.94575 1.03486 1.21309 0.99636 0.95143 0.94790 0.90162 1.21609 0.97829 0.83788 0.95639 1.44781 1.70769 1.04307 1.15992 1.19465 1.31914 0.88306 0.97908 0.89923 1.25804 1.02439 0.99764 0.98491 1.70373 1.51928 1.17231 1.19282 0.85010 0.77143 0.78905 0.78289 1.18419 1.22161 1.21927 1.21433 0.96027 0.93199 0.84295 1.20636 0.80828 0.96872 0.97909 0.93769 0.91357 0.90382 0.92625 0.93375 0.95164 0.90816 0.93915 0.88292 0.89431 0.89229 0.86284 0.93163 0.89934 0.89664 0.94572 0.96020 0.95036 0.99327 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.67 71.98 0.70 -1.99 16 2 C -0.11 -3.20 4.83 30.59 0.15 -3.05 16 3 C -0.10 -2.69 1.99 -11.54 -0.02 -2.71 16 4 H 0.12 2.41 5.82 -2.39 -0.01 2.39 16 5 C -0.13 -2.51 8.84 71.98 0.64 -1.88 16 6 C 0.48 18.66 6.15 87.66 0.54 19.20 16 7 O -0.56 -29.47 12.99 -3.03 -0.04 -29.51 16 8 N -0.59 -20.38 3.09 -811.19 -2.51 -22.89 16 9 C 0.10 2.22 5.41 86.30 0.47 2.69 16 10 C -0.13 -2.45 5.83 29.60 0.17 -2.28 16 11 C -0.10 -2.16 5.17 29.30 0.15 -2.01 16 12 C -0.09 -3.08 3.05 -11.42 -0.03 -3.11 16 13 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 14 C 0.14 5.86 6.65 86.70 0.58 6.44 16 15 N -0.63 -35.75 3.39 -696.53 -2.36 -38.11 16 16 C -0.25 -15.06 10.26 84.03 0.86 -14.20 16 17 H 0.08 4.76 7.83 -2.91 -0.02 4.74 16 18 C -0.07 -4.48 5.48 84.86 0.47 -4.02 16 19 N -0.94 -63.57 10.26 21.65 0.22 -63.35 16 20 Si 0.98 49.65 29.55 68.60 2.03 51.68 16 21 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 23 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 24 C 0.18 10.00 4.13 86.54 0.36 10.36 16 25 C 0.14 6.00 3.17 45.38 0.14 6.15 16 26 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.15 6.61 -2.39 -0.02 1.14 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.61 8.04 -2.38 -0.02 1.59 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.19 7.10 -2.39 -0.02 1.17 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.26 6.66 -2.39 -0.02 1.25 16 35 H 0.09 1.37 7.38 -2.38 -0.02 1.35 16 36 H 0.09 1.66 5.64 -2.39 -0.01 1.65 16 37 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.05 1.19 7.00 -2.39 -0.02 1.17 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.02 0.92 6.69 -2.39 -0.02 0.90 16 43 H 0.24 15.94 8.31 -92.71 -0.77 15.17 16 44 H -0.01 -0.77 7.37 -2.39 -0.02 -0.79 16 45 H 0.06 3.60 4.39 -3.67 -0.02 3.58 16 Total: -1.00 -85.85 331.43 3.45 -82.40 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.95 Total: 10.20 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.16 Total: 9.58 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -4.65 Total: -124.35 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.04 Total: -29.51 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.03 Total: 51.68 kcal Total: -85.85 3.45 -82.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049979691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.294 kcal (2) G-P(sol) polarization free energy of solvation -85.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds