Wall clock time and date at job start Tue Mar 31 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47419 * 2 1 4 4 H 1.08999 * 109.47334 * 304.99934 * 3 2 1 5 5 C 1.53005 * 109.46790 * 64.99964 * 3 2 1 6 6 C 1.50697 * 109.47366 * 184.99583 * 3 2 1 7 7 O 1.21287 * 119.99800 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00250 * 179.97438 * 6 3 2 9 9 C 1.47167 * 136.00121 * 359.64299 * 8 6 3 10 10 C 1.52639 * 87.97054 * 206.71663 * 9 8 6 11 11 C 1.47164 * 136.00251 * 179.97438 * 8 6 3 12 12 C 1.52546 * 113.89917 * 88.17163 * 10 9 8 13 13 C 1.53359 * 109.13147 * 190.30276 * 12 10 9 14 14 N 1.46882 * 108.74869 * 307.76048 * 13 12 10 15 15 C 1.36940 * 120.46009 * 235.60018 * 14 13 12 16 16 H 1.08005 * 120.00085 * 28.46974 * 15 14 13 17 17 C 1.38813 * 120.00019 * 208.46761 * 15 14 13 18 18 N 1.31618 * 120.00020 * 17.65302 * 17 15 14 19 19 Si 1.86801 * 120.00126 * 197.64663 * 17 15 14 20 20 H 1.48506 * 109.46887 * 60.00282 * 19 17 15 21 21 H 1.48500 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47176 * 300.00691 * 19 17 15 23 23 C 1.46887 * 119.07966 * 55.62482 * 14 13 12 24 24 C 1.52559 * 114.25760 * 220.76191 * 10 9 8 25 25 H 1.08999 * 109.47142 * 300.00346 * 1 2 3 26 26 H 1.09005 * 109.46969 * 60.00009 * 1 2 3 27 27 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47592 * 239.99942 * 2 1 3 29 29 H 1.09000 * 109.47181 * 120.00389 * 2 1 3 30 30 H 1.08999 * 109.47224 * 60.00448 * 5 3 2 31 31 H 1.09001 * 109.46792 * 180.02562 * 5 3 2 32 32 H 1.08994 * 109.47332 * 299.99957 * 5 3 2 33 33 H 1.09005 * 113.48653 * 321.41005 * 9 8 6 34 34 H 1.09000 * 113.49254 * 91.90746 * 9 8 6 35 35 H 1.09000 * 113.48941 * 268.09021 * 11 8 6 36 36 H 1.08996 * 113.48714 * 38.53699 * 11 8 6 37 37 H 1.08998 * 109.52648 * 310.19964 * 12 10 9 38 38 H 1.09003 * 109.53188 * 70.40840 * 12 10 9 39 39 H 1.09001 * 109.59048 * 187.97808 * 13 12 10 40 40 H 1.08998 * 109.58652 * 67.54075 * 13 12 10 41 41 H 0.97000 * 120.00339 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.59587 * 184.59437 * 23 14 13 43 43 H 1.08994 * 109.59644 * 64.13583 * 23 14 13 44 44 H 1.09005 * 109.52729 * 289.75539 * 24 10 9 45 45 H 1.09002 * 109.53072 * 49.89028 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4443 -0.1237 7 8 4.1450 0.3950 -0.2045 8 7 4.2149 2.6117 -0.1457 9 6 3.8613 4.0389 -0.0820 10 6 5.1402 4.3348 -0.8609 11 6 5.6253 3.0189 -0.2498 12 6 4.9655 4.2906 -2.3757 13 6 6.3454 4.3442 -3.0427 14 7 7.0843 5.4950 -2.5069 15 6 7.5898 6.4488 -3.3496 16 1 7.1070 6.6441 -4.2957 17 6 8.7228 7.1646 -2.9877 18 7 9.5079 6.7149 -2.0318 19 14 9.1332 8.7660 -3.8575 20 1 8.0220 9.7323 -3.6659 21 1 10.3842 9.3307 -3.2906 22 1 9.3200 8.5077 -5.3079 23 6 7.2740 5.6084 -1.0548 24 6 5.9007 5.5642 -0.3736 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 2.0699 1.5875 2.1492 31 1 1.9982 3.1543 1.3072 32 1 0.5490 2.1252 1.3970 33 1 2.9530 4.2863 -0.6314 34 1 3.8658 4.4429 0.9304 35 1 6.1142 3.1427 0.7165 36 1 6.2046 2.4056 -0.9399 37 1 4.4602 3.3668 -2.6574 38 1 4.3711 5.1453 -2.6990 39 1 6.2263 4.4558 -4.1204 40 1 6.8917 3.4262 -2.8263 41 1 10.2998 7.2149 -1.7791 42 1 7.7667 6.5526 -0.8230 43 1 7.8847 4.7782 -0.7000 44 1 5.3394 6.4638 -0.6264 45 1 6.0306 5.5076 0.7072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050438916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:36 Heat of formation + Delta-G solvation = 5.914497 kcal Electronic energy + Delta-G solvation = -22991.371024 eV Core-core repulsion = 19817.104860 eV Total energy + Delta-G solvation = -3174.266165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84001 -38.70147 -35.92964 -35.43040 -32.50492 -30.83961 -30.11425 -29.48142 -27.13396 -26.03107 -25.24760 -24.10475 -22.40309 -21.53815 -20.63159 -18.86753 -18.02579 -16.95430 -16.45909 -15.98856 -15.64331 -15.03719 -14.85635 -14.05299 -14.00347 -13.71565 -13.62798 -13.44526 -13.13452 -12.85748 -12.64479 -12.33207 -12.23658 -11.98669 -11.81040 -11.74702 -11.45959 -11.41985 -11.09278 -10.95728 -10.85549 -10.72501 -10.48772 -10.31783 -10.08178 -9.84026 -9.75055 -9.62150 -9.29935 -8.52710 -8.45842 -6.66955 -5.79986 -3.22621 2.73025 2.97272 3.37692 3.43727 3.44732 4.36225 4.48842 4.57861 4.60119 4.75093 5.03319 5.10853 5.17523 5.24406 5.28189 5.33760 5.37684 5.48994 5.52679 5.58436 5.61868 5.66442 5.68502 5.75418 5.84574 5.91714 5.97281 6.06576 6.07239 6.10412 6.20327 6.26717 6.44925 6.56580 6.61537 6.65390 6.81176 6.95575 7.32131 7.63530 7.78660 7.90803 8.27469 8.44970 9.20717 9.84070 10.40578 11.28196 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042655 B = 0.003576 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.276059 B = 7827.852777 C = 7850.590434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.105 4.105 4 H 0.094 0.906 5 C -0.145 4.145 6 C 0.541 3.459 7 O -0.548 6.548 8 N -0.641 5.641 9 C 0.102 3.898 10 C -0.076 4.076 11 C 0.113 3.887 12 C -0.106 4.106 13 C 0.147 3.853 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.171 3.829 24 C -0.124 4.124 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.018 0.982 44 H 0.062 0.938 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 -6.418 6.523 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.126 4.126 4 H 0.112 0.888 5 C -0.202 4.202 6 C 0.331 3.669 7 O -0.426 6.426 8 N -0.375 5.375 9 C -0.021 4.021 10 C -0.077 4.077 11 C -0.009 4.009 12 C -0.145 4.145 13 C 0.020 3.980 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.045 3.955 24 C -0.164 4.164 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.982 -7.129 6.535 18.681 hybrid contribution 0.276 0.863 -0.315 0.960 sum -15.706 -6.266 6.220 18.018 Atomic orbital electron populations 1.21840 0.95544 1.01784 1.01833 1.21341 0.95214 0.94295 1.03452 1.21268 0.91782 0.99085 1.00464 0.88788 1.21833 1.01985 1.00586 0.95826 1.20222 0.89390 0.81618 0.75640 1.90688 1.70488 1.30502 1.50896 1.49698 1.10365 1.05401 1.72084 1.23190 0.99549 0.79044 1.00340 1.21654 0.94388 0.95346 0.96293 1.23064 0.83443 0.93927 1.00513 1.21705 1.00219 1.00397 0.92170 1.20881 0.89983 0.90663 0.96439 1.44017 1.62981 1.22507 1.01784 1.19148 1.05749 1.11931 1.01532 0.91788 1.25039 0.95195 1.00214 0.99116 1.70021 1.13898 1.37904 1.32802 0.86384 0.77295 0.83965 0.79201 1.21029 1.21663 1.20918 1.20781 0.90259 1.01868 0.82547 1.22071 1.00340 0.95376 0.98625 0.92491 0.92708 0.92527 0.91140 0.91432 0.92283 0.91980 0.91353 0.90824 0.89948 0.90073 0.90433 0.93049 0.91735 0.92653 0.96405 0.93564 0.89189 0.96370 0.91912 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.11 -1.09 4.75 -26.73 -0.13 -1.22 16 3 C -0.10 -1.14 2.60 -91.77 -0.24 -1.38 16 4 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.14 -1.28 8.83 37.16 0.33 -0.95 16 6 C 0.54 8.14 7.40 -10.99 -0.08 8.06 16 7 O -0.55 -10.38 16.69 5.55 0.09 -10.28 16 8 N -0.64 -9.21 3.41 -185.32 -0.63 -9.85 16 9 C 0.10 1.24 5.88 -8.38 -0.05 1.19 16 10 C -0.08 -1.16 0.83 -155.17 -0.13 -1.29 16 11 C 0.11 1.77 7.56 -8.20 -0.06 1.71 16 12 C -0.11 -1.76 5.26 -26.78 -0.14 -1.90 16 13 C 0.15 3.02 6.41 -3.65 -0.02 3.00 16 14 N -0.59 -14.26 2.96 -172.18 -0.51 -14.77 16 15 C -0.25 -6.80 9.56 -15.06 -0.14 -6.94 16 16 H 0.06 1.69 7.89 -52.48 -0.41 1.27 16 17 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 18 N -0.90 -25.65 11.21 55.49 0.62 -25.03 16 19 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.17 3.85 5.27 -3.64 -0.02 3.83 16 24 C -0.12 -2.12 5.31 -26.77 -0.14 -2.26 16 25 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.53 6.34 -51.93 -0.33 0.20 16 32 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 33 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 35 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 36 H 0.08 1.37 7.54 -51.93 -0.39 0.98 16 37 H 0.05 0.81 7.95 -51.93 -0.41 0.40 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 40 H 0.02 0.38 7.60 -51.93 -0.39 -0.01 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 2.29 5.97 -51.93 -0.31 1.98 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.80 8.10 -51.93 -0.42 0.37 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -30.61 347.43 -8.73 -39.34 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.95 Total: -1.91 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.55 Total: 1.02 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.52 Total: -49.65 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.61 -8.73 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050438916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.250 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds