Wall clock time and date at job start Tue Mar 31 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47419 * 2 1 4 4 H 1.08999 * 109.47334 * 304.99934 * 3 2 1 5 5 C 1.53005 * 109.46790 * 64.99964 * 3 2 1 6 6 C 1.50697 * 109.47366 * 184.99583 * 3 2 1 7 7 O 1.21287 * 119.99800 * 0.02562 * 6 3 2 8 8 N 1.34775 * 120.00250 * 179.97438 * 6 3 2 9 9 C 1.47167 * 136.00121 * 359.64299 * 8 6 3 10 10 C 1.52639 * 87.97054 * 206.71663 * 9 8 6 11 11 C 1.47164 * 136.00251 * 179.97438 * 8 6 3 12 12 C 1.52546 * 113.89917 * 88.17163 * 10 9 8 13 13 C 1.53359 * 109.13147 * 190.30276 * 12 10 9 14 14 N 1.46882 * 108.74869 * 307.76048 * 13 12 10 15 15 C 1.36940 * 120.46009 * 235.60018 * 14 13 12 16 16 H 1.08005 * 120.00085 * 28.46974 * 15 14 13 17 17 C 1.38813 * 120.00019 * 208.46761 * 15 14 13 18 18 N 1.31618 * 120.00020 * 17.65302 * 17 15 14 19 19 Si 1.86801 * 120.00126 * 197.64663 * 17 15 14 20 20 H 1.48506 * 109.46887 * 60.00282 * 19 17 15 21 21 H 1.48500 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47176 * 300.00691 * 19 17 15 23 23 C 1.46887 * 119.07966 * 55.62482 * 14 13 12 24 24 C 1.52559 * 114.25760 * 220.76191 * 10 9 8 25 25 H 1.08999 * 109.47142 * 300.00346 * 1 2 3 26 26 H 1.09005 * 109.46969 * 60.00009 * 1 2 3 27 27 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47592 * 239.99942 * 2 1 3 29 29 H 1.09000 * 109.47181 * 120.00389 * 2 1 3 30 30 H 1.08999 * 109.47224 * 60.00448 * 5 3 2 31 31 H 1.09001 * 109.46792 * 180.02562 * 5 3 2 32 32 H 1.08994 * 109.47332 * 299.99957 * 5 3 2 33 33 H 1.09005 * 113.48653 * 321.41005 * 9 8 6 34 34 H 1.09000 * 113.49254 * 91.90746 * 9 8 6 35 35 H 1.09000 * 113.48941 * 268.09021 * 11 8 6 36 36 H 1.08996 * 113.48714 * 38.53699 * 11 8 6 37 37 H 1.08998 * 109.52648 * 310.19964 * 12 10 9 38 38 H 1.09003 * 109.53188 * 70.40840 * 12 10 9 39 39 H 1.09001 * 109.59048 * 187.97808 * 13 12 10 40 40 H 1.08998 * 109.58652 * 67.54075 * 13 12 10 41 41 H 0.97000 * 120.00339 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.59587 * 184.59437 * 23 14 13 43 43 H 1.08994 * 109.59644 * 64.13583 * 23 14 13 44 44 H 1.09005 * 109.52729 * 289.75539 * 24 10 9 45 45 H 1.09002 * 109.53072 * 49.89028 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4443 -0.1237 7 8 4.1450 0.3950 -0.2045 8 7 4.2149 2.6117 -0.1457 9 6 3.8613 4.0389 -0.0820 10 6 5.1402 4.3348 -0.8609 11 6 5.6253 3.0189 -0.2498 12 6 4.9655 4.2906 -2.3757 13 6 6.3454 4.3442 -3.0427 14 7 7.0843 5.4950 -2.5069 15 6 7.5898 6.4488 -3.3496 16 1 7.1070 6.6441 -4.2957 17 6 8.7228 7.1646 -2.9877 18 7 9.5079 6.7149 -2.0318 19 14 9.1332 8.7660 -3.8575 20 1 8.0220 9.7323 -3.6659 21 1 10.3842 9.3307 -3.2906 22 1 9.3200 8.5077 -5.3079 23 6 7.2740 5.6084 -1.0548 24 6 5.9007 5.5642 -0.3736 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 2.0699 1.5875 2.1492 31 1 1.9982 3.1543 1.3072 32 1 0.5490 2.1252 1.3970 33 1 2.9530 4.2863 -0.6314 34 1 3.8658 4.4429 0.9304 35 1 6.1142 3.1427 0.7165 36 1 6.2046 2.4056 -0.9399 37 1 4.4602 3.3668 -2.6574 38 1 4.3711 5.1453 -2.6990 39 1 6.2263 4.4558 -4.1204 40 1 6.8917 3.4262 -2.8263 41 1 10.2998 7.2149 -1.7791 42 1 7.7667 6.5526 -0.8230 43 1 7.8847 4.7782 -0.7000 44 1 5.3394 6.4638 -0.6264 45 1 6.0306 5.5076 0.7072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050438916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:35 Heat of formation + Delta-G solvation = -11.862018 kcal Electronic energy + Delta-G solvation = -22992.141872 eV Core-core repulsion = 19817.104860 eV Total energy + Delta-G solvation = -3175.037012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04963 -39.91966 -37.57803 -36.34867 -34.26757 -32.33921 -31.51600 -30.63089 -28.52569 -27.17206 -26.25784 -25.63679 -23.98308 -22.81362 -21.91786 -20.01686 -19.49161 -18.36045 -17.87354 -17.15696 -16.77967 -16.75315 -15.99646 -15.66801 -15.35587 -15.06679 -14.85867 -14.63083 -14.45959 -14.02059 -13.96559 -13.50527 -13.34846 -13.06614 -13.02903 -12.91482 -12.79651 -12.56619 -12.52568 -12.47360 -12.26862 -12.02403 -11.80327 -11.72006 -11.60807 -11.31157 -11.26726 -11.14867 -10.62788 -10.46488 -9.70567 -8.63933 -7.84958 -5.30816 1.49438 1.50875 1.58080 1.60317 1.86460 2.53609 3.24221 3.35231 3.47350 3.70711 3.81351 3.84273 3.99891 4.05820 4.26147 4.32852 4.43097 4.49146 4.51410 4.58440 4.60013 4.62992 4.70853 4.72491 4.81188 4.84521 4.93104 4.97739 5.02790 5.06206 5.10484 5.15451 5.20061 5.21533 5.35703 5.36493 5.37428 5.50453 5.55471 5.67745 5.82144 6.42322 6.79224 7.12016 7.18264 7.89470 8.40587 9.20513 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042655 B = 0.003576 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.276059 B = 7827.852777 C = 7850.590434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.097 4.097 4 H 0.113 0.887 5 C -0.140 4.140 6 C 0.533 3.467 7 O -0.599 6.599 8 N -0.640 5.640 9 C 0.120 3.880 10 C -0.078 4.078 11 C 0.105 3.895 12 C -0.091 4.091 13 C 0.143 3.857 14 N -0.608 5.608 15 C -0.264 4.264 16 H 0.065 0.935 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.274 1.274 21 H -0.296 1.296 22 H -0.279 1.279 23 C 0.175 3.825 24 C -0.108 4.108 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.001 0.999 41 H 0.250 0.750 42 H 0.056 0.944 43 H -0.008 1.008 44 H 0.068 0.932 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 -5.267 7.201 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.118 4.118 4 H 0.131 0.869 5 C -0.198 4.198 6 C 0.325 3.675 7 O -0.480 6.480 8 N -0.374 5.374 9 C -0.002 4.002 10 C -0.079 4.079 11 C -0.018 4.018 12 C -0.130 4.130 13 C 0.017 3.983 14 N -0.331 5.331 15 C -0.394 4.394 16 H 0.083 0.917 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.205 1.205 23 C 0.050 3.950 24 C -0.147 4.147 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.010 0.990 44 H 0.086 0.914 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.323 -5.965 7.211 21.470 hybrid contribution 1.383 0.418 -0.572 1.554 sum -17.939 -5.547 6.639 19.916 Atomic orbital electron populations 1.21800 0.93010 1.02529 1.02968 1.21329 0.97293 0.93924 1.01768 1.21335 0.88243 0.99733 1.02503 0.86904 1.21844 1.03564 1.00465 0.93894 1.21123 0.91135 0.80857 0.74418 1.90665 1.71832 1.32348 1.53152 1.49767 1.09581 1.06490 1.71523 1.23218 0.98442 0.76950 1.01547 1.21542 0.96647 0.94019 0.95696 1.23054 0.84442 0.93915 1.00346 1.21502 0.97316 1.01283 0.92893 1.20979 0.91828 0.88766 0.96683 1.44290 1.63288 1.23154 1.02362 1.19483 1.05661 1.12378 1.01896 0.91734 1.25780 0.95274 1.03198 1.00199 1.70184 1.14315 1.39047 1.34502 0.85366 0.76849 0.80279 0.78081 1.20021 1.22188 1.20502 1.20624 0.93102 0.98948 0.82341 1.21831 0.96823 0.96471 0.99571 0.90986 0.91810 0.92131 0.93341 0.92809 0.93224 0.91090 0.88859 0.87975 0.87095 0.89251 0.93529 0.91995 0.90720 0.93074 0.98130 0.94118 0.92523 0.98984 0.91355 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.12 16 2 C -0.10 -2.04 4.75 30.59 0.15 -1.89 16 3 C -0.10 -1.84 2.60 -11.54 -0.03 -1.87 16 4 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.14 -1.91 8.83 71.98 0.64 -1.28 16 6 C 0.53 15.33 7.40 87.66 0.65 15.98 16 7 O -0.60 -23.05 16.69 -3.05 -0.05 -23.11 16 8 N -0.64 -17.03 3.41 -858.61 -2.93 -19.96 16 9 C 0.12 2.40 5.88 83.21 0.49 2.89 16 10 C -0.08 -2.22 0.83 -52.60 -0.04 -2.26 16 11 C 0.11 3.25 7.56 83.32 0.63 3.88 16 12 C -0.09 -2.88 5.26 30.56 0.16 -2.72 16 13 C 0.14 5.97 6.41 86.43 0.55 6.52 16 14 N -0.61 -29.88 2.96 -698.66 -2.07 -31.95 16 15 C -0.26 -14.33 9.56 84.03 0.80 -13.52 16 16 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 17 C -0.05 -2.71 4.89 84.86 0.42 -2.29 16 18 N -0.93 -54.83 11.21 21.65 0.24 -54.58 16 19 Si 0.97 44.22 29.59 68.60 2.03 46.24 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.18 8.04 5.27 86.43 0.46 8.49 16 24 C -0.11 -3.47 5.31 30.57 0.16 -3.31 16 25 H 0.07 0.69 6.56 -2.39 -0.02 0.68 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 1.13 7.95 -2.39 -0.02 1.11 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.85 6.34 -2.39 -0.02 0.84 16 32 H 0.09 0.84 6.56 -2.39 -0.02 0.83 16 33 H 0.10 1.58 8.10 -2.38 -0.02 1.56 16 34 H 0.11 1.71 8.03 -2.39 -0.02 1.69 16 35 H 0.09 2.59 8.06 -2.39 -0.02 2.58 16 36 H 0.05 1.71 7.54 -2.39 -0.02 1.69 16 37 H 0.06 1.85 7.95 -2.39 -0.02 1.83 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 2.12 7.92 -2.39 -0.02 2.10 16 40 H 0.00 0.03 7.60 -2.39 -0.02 0.02 16 41 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.06 2.97 5.97 -2.39 -0.01 2.95 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 Total: -1.00 -69.92 347.43 3.89 -66.03 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.94 Total: 9.82 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.72 Total: 7.50 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -4.75 Total: -106.49 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.92 3.89 -66.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050438916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.165 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds