Wall clock time and date at job start Tue Mar 31 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 H 1.08995 * 109.47262 * 54.99185 * 3 2 1 5 5 C 1.52997 * 109.46837 * 294.99466 * 3 2 1 6 6 C 1.50697 * 109.47189 * 174.99994 * 3 2 1 7 7 O 1.21290 * 119.99834 * 359.97438 * 6 3 2 8 8 N 1.34766 * 120.00220 * 179.97438 * 6 3 2 9 9 C 1.47671 * 134.45647 * 179.97438 * 8 6 3 10 10 C 1.53516 * 85.97810 * 204.33262 * 9 8 6 11 11 C 1.47671 * 134.45751 * 0.02759 * 8 6 3 12 12 C 1.52678 * 113.57151 * 91.01291 * 10 9 8 13 13 C 1.53341 * 109.10821 * 73.81618 * 12 10 9 14 14 N 1.46878 * 108.76222 * 52.40663 * 13 12 10 15 15 C 1.36942 * 120.46612 * 124.47515 * 14 13 12 16 16 H 1.07995 * 119.99541 * 331.55754 * 15 14 13 17 17 C 1.38808 * 119.99991 * 151.83908 * 15 14 13 18 18 N 1.31615 * 120.00070 * 342.22560 * 17 15 14 19 19 Si 1.86804 * 119.99766 * 162.22409 * 17 15 14 20 20 H 1.48496 * 109.46872 * 90.00294 * 19 17 15 21 21 H 1.48500 * 109.46904 * 210.00085 * 19 17 15 22 22 H 1.48496 * 109.47110 * 329.99821 * 19 17 15 23 23 C 1.46886 * 119.06696 * 304.73887 * 14 13 12 24 24 C 1.52669 * 113.56488 * 222.23108 * 10 9 8 25 25 H 1.09003 * 109.46906 * 60.00888 * 1 2 3 26 26 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47281 * 300.00358 * 1 2 3 28 28 H 1.08998 * 109.47281 * 239.99642 * 2 1 3 29 29 H 1.09003 * 109.46906 * 119.99112 * 2 1 3 30 30 H 1.09006 * 109.47600 * 60.00393 * 5 3 2 31 31 H 1.09001 * 109.47410 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47463 * 300.00422 * 5 3 2 33 33 H 1.09000 * 113.79635 * 90.07156 * 9 8 6 34 34 H 1.09000 * 113.90094 * 318.60938 * 9 8 6 35 35 H 1.08995 * 113.78886 * 41.39008 * 11 8 6 36 36 H 1.09006 * 113.78660 * 269.92620 * 11 8 6 37 37 H 1.08994 * 109.53131 * 313.92958 * 12 10 9 38 38 H 1.08993 * 109.58843 * 193.73888 * 12 10 9 39 39 H 1.09003 * 109.58965 * 292.62160 * 13 12 10 40 40 H 1.09003 * 109.58355 * 172.18623 * 13 12 10 41 41 H 0.97006 * 119.99997 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.58454 * 175.04273 * 23 14 13 43 43 H 1.08997 * 109.59165 * 295.47702 * 23 14 13 44 44 H 1.09002 * 109.53084 * 46.08145 * 24 10 9 45 45 H 1.09006 * 109.52715 * 166.22401 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 3.5419 1.4445 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2148 2.6119 0.1448 9 6 5.6403 2.9821 0.2519 10 6 5.1388 4.3240 0.8037 11 6 3.8221 4.0335 0.0708 12 6 5.0002 4.3455 2.3240 13 6 6.3963 4.4143 2.9544 14 7 7.1303 5.5368 2.3557 15 6 7.6646 6.5182 3.1474 16 1 7.2079 6.7541 4.0972 17 6 8.7897 7.2137 2.7264 18 7 9.5457 6.7235 1.7670 19 14 9.2307 8.8456 3.5215 20 1 10.1207 8.6044 4.6855 21 1 9.9305 9.7047 2.5329 22 1 7.9915 9.5246 3.9780 23 6 7.2780 5.5951 0.8955 24 6 5.8931 5.5312 0.2518 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 0.5489 2.1252 -1.3971 31 1 1.9989 3.1540 -1.3077 32 1 2.0699 1.5874 -2.1492 33 1 6.1469 3.0640 -0.7098 34 1 6.1974 2.3890 0.9772 35 1 2.9326 4.2748 0.6526 36 1 3.7880 4.4279 -0.9448 37 1 4.4945 3.4391 2.6567 38 1 4.4208 5.2179 2.6258 39 1 6.9306 3.4839 2.7616 40 1 6.3046 4.5695 4.0294 41 1 10.3317 7.2098 1.4725 42 1 7.7670 6.5280 0.6146 43 1 7.8757 4.7497 0.5546 44 1 5.9961 5.4335 -0.8290 45 1 5.3423 6.4426 0.4845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050438917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:40 Heat of formation + Delta-G solvation = 2.571814 kcal Electronic energy + Delta-G solvation = -23001.398755 eV Core-core repulsion = 19826.987640 eV Total energy + Delta-G solvation = -3174.411114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71284 -38.64904 -35.87970 -35.42050 -32.48882 -30.81351 -30.12723 -29.47029 -27.06243 -26.18316 -25.24189 -24.07165 -22.38173 -21.49762 -20.61781 -18.84183 -18.03638 -16.96818 -16.40633 -15.98322 -15.62101 -15.03857 -14.85071 -14.03497 -13.97483 -13.70998 -13.63157 -13.44105 -13.13517 -12.84528 -12.66447 -12.32320 -12.17043 -11.98139 -11.84637 -11.72846 -11.51010 -11.42331 -11.09266 -10.94449 -10.84889 -10.72165 -10.50031 -10.30384 -10.13512 -9.86877 -9.73429 -9.63129 -9.25123 -8.50937 -8.45710 -6.66944 -5.80296 -3.22657 2.74509 2.97150 3.36416 3.43813 3.45853 4.36027 4.48692 4.58708 4.63461 4.75971 5.04885 5.11656 5.18326 5.22609 5.28785 5.35015 5.37444 5.47840 5.53086 5.58107 5.62239 5.65534 5.69295 5.75939 5.85799 5.91331 5.98637 6.06688 6.07956 6.11251 6.21210 6.26739 6.44562 6.56338 6.60995 6.66440 6.80866 6.95128 7.32100 7.63336 7.78689 7.88716 8.28982 8.44672 9.20472 9.84029 10.40361 11.27992 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043259 B = 0.003576 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.111750 B = 7827.707995 C = 7836.683411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.106 4.106 4 H 0.093 0.907 5 C -0.145 4.145 6 C 0.534 3.466 7 O -0.549 6.549 8 N -0.638 5.638 9 C 0.117 3.883 10 C -0.075 4.075 11 C 0.103 3.897 12 C -0.108 4.108 13 C 0.147 3.853 14 N -0.591 5.591 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.171 3.829 24 C -0.127 4.127 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.089 0.911 43 H 0.018 0.982 44 H 0.053 0.947 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.519 -6.511 -5.918 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.127 4.127 4 H 0.112 0.888 5 C -0.203 4.203 6 C 0.324 3.676 7 O -0.427 6.427 8 N -0.373 5.373 9 C -0.005 4.005 10 C -0.075 4.075 11 C -0.020 4.020 12 C -0.147 4.147 13 C 0.020 3.980 14 N -0.313 5.313 15 C -0.383 4.383 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.045 3.955 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.140 -7.198 -5.935 18.643 hybrid contribution 0.288 0.876 0.275 0.962 sum -15.852 -6.322 -5.660 17.980 Atomic orbital electron populations 1.21843 0.95576 1.01765 1.01818 1.21339 0.95184 0.94346 1.03421 1.21271 0.91975 0.99041 1.00409 0.88842 1.21840 1.01963 1.00617 0.95851 1.20348 0.89509 0.82068 0.75666 1.90684 1.70511 1.30666 1.50851 1.50111 1.09825 1.05264 1.72081 1.23255 0.82819 0.93756 1.00672 1.21988 0.93796 0.95162 0.96598 1.23453 0.99278 0.78888 1.00378 1.21758 1.00243 1.00458 0.92222 1.20883 0.89880 0.91031 0.96194 1.44004 1.62609 1.23128 1.01563 1.19163 1.06104 1.10470 1.02530 0.91800 1.25030 0.95334 1.00022 0.99192 1.70035 1.15262 1.37528 1.31738 0.86334 0.78102 0.84036 0.78522 1.21425 1.21575 1.20499 1.20672 0.90276 1.01802 0.82755 1.22056 1.00444 0.95791 0.98372 0.92497 0.92548 0.92722 0.91453 0.91170 0.91376 0.91950 0.92302 0.90030 0.90082 0.90438 0.89877 0.93023 0.91759 0.96387 0.92656 0.93634 0.89257 0.96418 0.92858 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.10 -1.10 4.75 -26.73 -0.13 -1.22 16 3 C -0.11 -1.15 2.55 -91.77 -0.23 -1.38 16 4 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 5 C -0.15 -1.28 8.83 37.16 0.33 -0.96 16 6 C 0.53 8.03 7.38 -10.99 -0.08 7.95 16 7 O -0.55 -10.39 16.65 5.55 0.09 -10.30 16 8 N -0.64 -9.15 3.40 -180.20 -0.61 -9.76 16 9 C 0.12 1.84 7.62 -3.14 -0.02 1.82 16 10 C -0.07 -1.14 0.77 -154.43 -0.12 -1.26 16 11 C 0.10 1.24 6.02 -3.17 -0.02 1.22 16 12 C -0.11 -1.78 5.21 -26.72 -0.14 -1.92 16 13 C 0.15 3.00 6.38 -3.66 -0.02 2.98 16 14 N -0.59 -14.24 2.97 -172.51 -0.51 -14.76 16 15 C -0.25 -6.77 9.56 -15.06 -0.14 -6.92 16 16 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 17 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 18 N -0.90 -25.64 11.22 55.49 0.62 -25.01 16 19 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.17 3.83 5.21 -3.91 -0.02 3.81 16 24 C -0.13 -2.16 5.24 -26.98 -0.14 -2.30 16 25 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 30 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 31 H 0.06 0.53 6.12 -51.93 -0.32 0.22 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.08 1.42 7.41 -51.93 -0.38 1.04 16 35 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 37 H 0.05 0.81 8.01 -51.93 -0.42 0.39 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.38 7.49 -51.93 -0.39 0.00 16 40 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.09 2.27 5.98 -51.93 -0.31 1.96 16 43 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -30.65 346.70 -8.61 -39.26 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.92 Total: -1.87 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.47 Total: 0.99 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.50 Total: -49.53 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.65 -8.61 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050438917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.835 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds