Wall clock time and date at job start Tue Mar 31 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 H 1.08995 * 109.47262 * 54.99185 * 3 2 1 5 5 C 1.52997 * 109.46837 * 294.99466 * 3 2 1 6 6 C 1.50697 * 109.47189 * 174.99994 * 3 2 1 7 7 O 1.21290 * 119.99834 * 359.97438 * 6 3 2 8 8 N 1.34766 * 120.00220 * 179.97438 * 6 3 2 9 9 C 1.47671 * 134.45647 * 179.97438 * 8 6 3 10 10 C 1.53516 * 85.97810 * 204.33262 * 9 8 6 11 11 C 1.47671 * 134.45751 * 0.02759 * 8 6 3 12 12 C 1.52678 * 113.57151 * 91.01291 * 10 9 8 13 13 C 1.53341 * 109.10821 * 73.81618 * 12 10 9 14 14 N 1.46878 * 108.76222 * 52.40663 * 13 12 10 15 15 C 1.36942 * 120.46612 * 124.47515 * 14 13 12 16 16 H 1.07995 * 119.99541 * 331.55754 * 15 14 13 17 17 C 1.38808 * 119.99991 * 151.83908 * 15 14 13 18 18 N 1.31615 * 120.00070 * 342.22560 * 17 15 14 19 19 Si 1.86804 * 119.99766 * 162.22409 * 17 15 14 20 20 H 1.48496 * 109.46872 * 90.00294 * 19 17 15 21 21 H 1.48500 * 109.46904 * 210.00085 * 19 17 15 22 22 H 1.48496 * 109.47110 * 329.99821 * 19 17 15 23 23 C 1.46886 * 119.06696 * 304.73887 * 14 13 12 24 24 C 1.52669 * 113.56488 * 222.23108 * 10 9 8 25 25 H 1.09003 * 109.46906 * 60.00888 * 1 2 3 26 26 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47281 * 300.00358 * 1 2 3 28 28 H 1.08998 * 109.47281 * 239.99642 * 2 1 3 29 29 H 1.09003 * 109.46906 * 119.99112 * 2 1 3 30 30 H 1.09006 * 109.47600 * 60.00393 * 5 3 2 31 31 H 1.09001 * 109.47410 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47463 * 300.00422 * 5 3 2 33 33 H 1.09000 * 113.79635 * 90.07156 * 9 8 6 34 34 H 1.09000 * 113.90094 * 318.60938 * 9 8 6 35 35 H 1.08995 * 113.78886 * 41.39008 * 11 8 6 36 36 H 1.09006 * 113.78660 * 269.92620 * 11 8 6 37 37 H 1.08994 * 109.53131 * 313.92958 * 12 10 9 38 38 H 1.08993 * 109.58843 * 193.73888 * 12 10 9 39 39 H 1.09003 * 109.58965 * 292.62160 * 13 12 10 40 40 H 1.09003 * 109.58355 * 172.18623 * 13 12 10 41 41 H 0.97006 * 119.99997 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.58454 * 175.04273 * 23 14 13 43 43 H 1.08997 * 109.59165 * 295.47702 * 23 14 13 44 44 H 1.09002 * 109.53084 * 46.08145 * 24 10 9 45 45 H 1.09006 * 109.52715 * 166.22401 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 3.5419 1.4445 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2148 2.6119 0.1448 9 6 5.6403 2.9821 0.2519 10 6 5.1388 4.3240 0.8037 11 6 3.8221 4.0335 0.0708 12 6 5.0002 4.3455 2.3240 13 6 6.3963 4.4143 2.9544 14 7 7.1303 5.5368 2.3557 15 6 7.6646 6.5182 3.1474 16 1 7.2079 6.7541 4.0972 17 6 8.7897 7.2137 2.7264 18 7 9.5457 6.7235 1.7670 19 14 9.2307 8.8456 3.5215 20 1 10.1207 8.6044 4.6855 21 1 9.9305 9.7047 2.5329 22 1 7.9915 9.5246 3.9780 23 6 7.2780 5.5951 0.8955 24 6 5.8931 5.5312 0.2518 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 0.5489 2.1252 -1.3971 31 1 1.9989 3.1540 -1.3077 32 1 2.0699 1.5874 -2.1492 33 1 6.1469 3.0640 -0.7098 34 1 6.1974 2.3890 0.9772 35 1 2.9326 4.2748 0.6526 36 1 3.7880 4.4279 -0.9448 37 1 4.4945 3.4391 2.6567 38 1 4.4208 5.2179 2.6258 39 1 6.9306 3.4839 2.7616 40 1 6.3046 4.5695 4.0294 41 1 10.3317 7.2098 1.4725 42 1 7.7670 6.5280 0.6146 43 1 7.8757 4.7497 0.5546 44 1 5.9961 5.4335 -0.8290 45 1 5.3423 6.4426 0.4845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050438917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:39 Heat of formation + Delta-G solvation = -15.262882 kcal Electronic energy + Delta-G solvation = -23002.172125 eV Core-core repulsion = 19826.987640 eV Total energy + Delta-G solvation = -3175.184485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91918 -39.87831 -37.51445 -36.34113 -34.25024 -32.31497 -31.52855 -30.61081 -28.46044 -27.31112 -26.26115 -25.59911 -23.95990 -22.76274 -21.90888 -19.96744 -19.51669 -18.37058 -17.82418 -17.15223 -16.77084 -16.73904 -15.99394 -15.63868 -15.36273 -15.04948 -14.84776 -14.62282 -14.45598 -14.00170 -13.94622 -13.49470 -13.31912 -13.07233 -13.03915 -12.90998 -12.85190 -12.56122 -12.54377 -12.46336 -12.25571 -12.00752 -11.80498 -11.71133 -11.60450 -11.30803 -11.27446 -11.21267 -10.58856 -10.45327 -9.68141 -8.63751 -7.85169 -5.30676 1.48335 1.49922 1.59615 1.62024 1.86379 2.53429 3.26141 3.36900 3.47147 3.71047 3.82050 3.85485 4.00602 4.06347 4.24461 4.34794 4.43471 4.49703 4.51506 4.58793 4.60125 4.63516 4.70958 4.72929 4.81984 4.86510 4.93399 4.98599 5.02942 5.06989 5.10940 5.16193 5.20203 5.21589 5.36092 5.36996 5.37678 5.50654 5.55640 5.67862 5.81976 6.42318 6.77360 7.13955 7.18236 7.89644 8.40557 9.20575 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043259 B = 0.003576 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.111750 B = 7827.707995 C = 7836.683411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.098 4.098 4 H 0.113 0.887 5 C -0.141 4.141 6 C 0.526 3.474 7 O -0.600 6.600 8 N -0.637 5.637 9 C 0.109 3.891 10 C -0.076 4.076 11 C 0.122 3.878 12 C -0.093 4.093 13 C 0.143 3.857 14 N -0.608 5.608 15 C -0.262 4.262 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.268 1.268 23 C 0.176 3.824 24 C -0.111 4.111 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.002 0.998 40 H 0.051 0.949 41 H 0.249 0.751 42 H 0.055 0.945 43 H -0.008 1.008 44 H 0.078 0.922 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 -5.375 -6.500 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.119 4.119 4 H 0.131 0.869 5 C -0.198 4.198 6 C 0.317 3.683 7 O -0.481 6.481 8 N -0.371 5.371 9 C -0.014 4.014 10 C -0.077 4.077 11 C 0.000 4.000 12 C -0.132 4.132 13 C 0.017 3.983 14 N -0.331 5.331 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.193 1.193 23 C 0.050 3.950 24 C -0.150 4.150 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.020 0.980 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.010 0.990 44 H 0.097 0.903 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.530 -6.049 -6.515 21.458 hybrid contribution 1.409 0.438 0.504 1.559 sum -18.121 -5.611 -6.011 19.900 Atomic orbital electron populations 1.21802 0.93036 1.02504 1.02962 1.21327 0.97269 0.93996 1.01713 1.21335 0.88453 0.99672 1.02459 0.86894 1.21852 1.03543 1.00509 0.93913 1.21230 0.91269 0.81306 0.74450 1.90661 1.71859 1.32509 1.53108 1.50175 1.09018 1.06358 1.71508 1.23208 0.83929 0.93937 1.00315 1.21896 0.96091 0.93745 0.95953 1.23531 0.97985 0.76679 1.01774 1.21559 0.97264 1.01400 0.92961 1.20988 0.91823 0.89167 0.96327 1.44277 1.62910 1.23720 1.02215 1.19494 1.06003 1.10958 1.02807 0.91751 1.25770 0.95485 1.03110 1.00131 1.70194 1.15721 1.38730 1.33390 0.85317 0.77918 0.80142 0.77297 1.21568 1.21848 1.19290 1.20509 0.93174 0.98864 0.82450 1.21824 0.96880 0.96922 0.99381 0.91004 0.92167 0.91792 0.92883 0.93367 0.88880 0.91022 0.93298 0.89509 0.92978 0.87517 0.87072 0.91837 0.90756 0.98016 0.93058 0.94147 0.92644 0.99027 0.90331 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.13 16 2 C -0.10 -2.04 4.75 30.60 0.15 -1.90 16 3 C -0.10 -1.86 2.55 -11.54 -0.03 -1.89 16 4 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.14 -1.92 8.83 71.98 0.64 -1.29 16 6 C 0.53 15.10 7.38 87.66 0.65 15.75 16 7 O -0.60 -23.08 16.65 -3.06 -0.05 -23.13 16 8 N -0.64 -16.88 3.40 -842.42 -2.87 -19.75 16 9 C 0.11 3.38 7.62 86.32 0.66 4.04 16 10 C -0.08 -2.15 0.77 -52.04 -0.04 -2.19 16 11 C 0.12 2.40 6.02 86.31 0.52 2.92 16 12 C -0.09 -2.91 5.21 30.60 0.16 -2.75 16 13 C 0.14 5.90 6.38 86.42 0.55 6.45 16 14 N -0.61 -29.83 2.97 -699.68 -2.08 -31.90 16 15 C -0.26 -14.23 9.56 84.03 0.80 -13.42 16 16 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 17 C -0.05 -2.74 4.89 84.86 0.41 -2.32 16 18 N -0.93 -54.82 11.22 21.65 0.24 -54.58 16 19 Si 0.97 44.21 29.59 68.60 2.03 46.24 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 C 0.18 8.04 5.21 86.26 0.45 8.49 16 24 C -0.11 -3.58 5.24 30.44 0.16 -3.42 16 25 H 0.07 0.70 6.57 -2.39 -0.02 0.68 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.13 7.95 -2.39 -0.02 1.11 16 30 H 0.09 0.84 6.57 -2.38 -0.02 0.83 16 31 H 0.07 0.86 6.12 -2.39 -0.01 0.84 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 2.58 8.07 -2.39 -0.02 2.56 16 34 H 0.05 1.90 7.41 -2.39 -0.02 1.89 16 35 H 0.11 1.60 8.09 -2.39 -0.02 1.58 16 36 H 0.11 1.70 7.90 -2.38 -0.02 1.68 16 37 H 0.06 1.86 8.01 -2.39 -0.02 1.84 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.00 0.08 7.49 -2.39 -0.02 0.07 16 40 H 0.05 2.11 7.92 -2.39 -0.02 2.09 16 41 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 42 H 0.06 2.91 5.98 -2.39 -0.01 2.89 16 43 H -0.01 -0.42 8.07 -2.39 -0.02 -0.44 16 44 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 45 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -70.01 346.70 3.99 -66.02 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.94 Total: 9.77 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.77 Total: 7.34 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.70 Total: -106.23 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.01 3.99 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050438917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.752 kcal (2) G-P(sol) polarization free energy of solvation -70.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds