Wall clock time and date at job start Tue Mar 31 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46774 * 2 1 4 4 H 1.09000 * 115.55219 * 29.42149 * 3 2 1 5 5 C 1.53004 * 117.51482 * 243.71462 * 3 2 1 6 6 C 1.52998 * 59.99905 * 252.52087 * 5 3 2 7 7 H 1.08999 * 117.49885 * 107.49545 * 6 5 3 8 8 C 1.50704 * 117.51901 * 252.51671 * 6 5 3 9 9 O 1.21285 * 119.99344 * 68.63501 * 8 6 5 10 10 N 1.34768 * 120.00256 * 248.62895 * 8 6 5 11 11 C 1.46501 * 119.99847 * 179.97438 * 10 8 6 12 12 H 1.08991 * 109.49580 * 325.00557 * 11 10 8 13 13 C 1.52571 * 109.48947 * 204.95601 * 11 10 8 14 14 C 1.47092 * 114.32530 * 155.02498 * 13 11 10 15 15 C 1.54862 * 110.32511 * 62.80521 * 14 13 11 16 16 N 1.44583 * 109.59711 * 288.73405 * 15 14 13 17 17 C 1.36938 * 118.64203 * 270.72062 * 16 15 14 18 18 H 1.08005 * 120.00132 * 26.47959 * 17 16 15 19 19 C 1.38811 * 119.99904 * 206.47123 * 17 16 15 20 20 N 1.31621 * 119.99996 * 15.65212 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 195.65091 * 19 17 16 22 22 H 1.48498 * 109.47395 * 60.00186 * 21 19 17 23 23 H 1.48505 * 109.47221 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47153 * 300.00331 * 21 19 17 25 25 C 1.47604 * 122.71458 * 90.70162 * 16 15 14 26 26 C 1.50884 * 109.48959 * 85.05372 * 11 10 8 27 27 H 1.08999 * 109.47170 * 299.99759 * 1 2 3 28 28 H 1.08999 * 109.47251 * 60.00327 * 1 2 3 29 29 H 1.08999 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47170 * 240.00241 * 2 1 3 31 31 H 1.09001 * 109.47581 * 120.00088 * 2 1 3 32 32 H 1.09000 * 117.50189 * 0.02562 * 5 3 2 33 33 H 1.09000 * 117.49537 * 145.03136 * 5 3 2 34 34 H 0.96998 * 120.00224 * 0.02562 * 10 8 6 35 35 H 1.09007 * 108.51265 * 276.27577 * 13 11 10 36 36 H 1.08996 * 108.51307 * 33.92356 * 13 11 10 37 37 H 1.08997 * 109.32831 * 183.06456 * 14 13 11 38 38 H 1.08996 * 109.32932 * 302.54001 * 14 13 11 39 39 H 1.08999 * 109.45222 * 48.76945 * 15 14 13 40 40 H 1.09000 * 109.44873 * 168.72497 * 15 14 13 41 41 H 0.97002 * 119.99704 * 179.97438 * 20 19 17 42 42 H 1.09007 * 108.94332 * 78.57605 * 25 16 15 43 43 H 1.08991 * 108.94890 * 197.29014 * 25 16 15 44 44 H 1.09007 * 109.36386 * 332.04139 * 26 11 10 45 45 H 1.08996 * 109.36767 * 91.65403 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3890 2.1713 0.4831 5 6 2.8421 1.9087 -1.2167 6 6 3.5502 1.6579 0.1162 7 1 4.1806 0.7720 0.1922 8 6 4.0241 2.8611 0.8901 9 8 3.2176 3.6150 1.3924 10 7 5.3437 3.0992 1.0242 11 6 5.8043 4.2692 1.7761 12 1 5.1120 5.0966 1.6212 13 6 7.1942 4.6708 1.2917 14 6 7.5263 6.0869 1.5102 15 6 7.5407 6.4084 3.0250 16 7 6.1884 6.3955 3.5364 17 6 5.4644 7.5575 3.5072 18 1 5.6869 8.3139 2.7691 19 6 4.4445 7.7630 4.4261 20 7 4.3660 7.0087 5.5019 21 14 3.1834 9.1102 4.1360 22 1 2.4696 8.8535 2.8593 23 1 2.2074 9.1240 5.2552 24 1 3.8710 10.4245 4.0630 25 6 5.5558 5.1814 4.0883 26 6 5.8645 3.9315 3.2454 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.0063 1.1878 -2.0176 33 1 2.7188 2.9442 -1.5340 34 1 5.9887 2.4964 0.6222 35 1 7.9318 4.0583 1.8103 36 1 7.2622 4.4624 0.2240 37 1 8.5089 6.2965 1.0876 38 1 6.7830 6.7123 1.0158 39 1 8.1342 5.6595 3.5494 40 1 7.9785 7.3941 3.1827 41 1 3.6535 7.1526 6.1442 42 1 5.9204 5.0226 5.1033 43 1 4.4762 5.3277 4.1193 44 1 5.1324 3.1552 3.4682 45 1 6.8616 3.5666 3.4918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052726642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:30 Heat of formation + Delta-G solvation = -5.655245 kcal Electronic energy + Delta-G solvation = -22861.257247 eV Core-core repulsion = 19686.489381 eV Total energy + Delta-G solvation = -3174.767866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.94203 -38.11578 -36.69587 -34.55279 -32.80403 -32.17763 -30.87654 -30.31842 -26.16738 -24.86011 -23.93851 -23.35734 -22.86876 -20.62716 -20.19203 -19.56780 -19.16074 -17.04164 -16.56456 -15.87045 -15.15819 -14.87324 -14.77010 -14.38998 -14.14041 -13.95152 -13.54174 -13.11050 -12.89960 -12.61516 -12.47379 -12.37403 -12.24394 -11.86176 -11.55154 -11.47401 -11.15871 -11.02464 -10.81737 -10.69864 -10.40336 -10.31425 -10.18795 -10.07706 -10.00320 -9.87828 -9.64269 -9.52741 -9.36904 -8.62790 -8.26644 -6.57029 -5.67540 -3.11309 2.77781 3.41344 3.46860 3.52678 3.55475 3.83313 4.55523 4.60557 4.69765 4.77316 5.04311 5.15322 5.19189 5.23040 5.30660 5.35384 5.53117 5.54650 5.61299 5.66667 5.77346 5.80711 5.86280 5.96076 6.00009 6.06207 6.17038 6.25839 6.28450 6.37617 6.49537 6.54349 6.66294 6.76126 6.83826 6.90359 7.07274 7.13911 7.53790 7.81278 7.88663 7.93573 8.58078 8.62417 9.34535 10.01738 10.46036 11.40046 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.004854 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.696333 B = 5767.544347 C = 6822.809230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.120 4.120 4 H 0.119 0.881 5 C -0.151 4.151 6 C -0.189 4.189 7 H 0.119 0.881 8 C 0.534 3.466 9 O -0.528 6.528 10 N -0.725 5.725 11 C 0.154 3.846 12 H 0.101 0.899 13 C -0.106 4.106 14 C -0.146 4.146 15 C 0.157 3.843 16 N -0.591 5.591 17 C -0.261 4.261 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.903 5.903 21 Si 0.899 3.101 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.183 3.817 26 C -0.146 4.146 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.391 0.609 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.025 0.975 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -14.352 -12.515 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.139 4.139 4 H 0.137 0.863 5 C -0.188 4.188 6 C -0.210 4.210 7 H 0.137 0.863 8 C 0.320 3.680 9 O -0.404 6.404 10 N -0.375 5.375 11 C 0.050 3.950 12 H 0.119 0.881 13 C -0.144 4.144 14 C -0.187 4.187 15 C 0.028 3.972 16 N -0.312 5.312 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.729 3.271 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.058 3.942 26 C -0.186 4.186 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.224 0.776 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.185 -13.793 -11.962 18.258 hybrid contribution -0.217 0.289 -0.307 0.474 sum -0.032 -13.504 -12.269 18.245 Atomic orbital electron populations 1.21742 0.95241 1.01467 1.02283 1.21141 0.96257 0.93760 1.01926 1.22475 0.91750 0.98575 1.01059 0.86336 1.23073 1.02444 1.03041 0.90283 1.22337 0.97522 0.99184 1.01939 0.86327 1.19594 0.82686 0.85572 0.80187 1.90775 1.53790 1.48033 1.47758 1.46247 1.06540 1.29004 1.55719 1.20523 0.96299 0.87402 0.90730 0.88066 1.20560 0.95681 0.98569 0.99552 1.21453 0.99938 0.95349 1.01927 1.20692 0.87391 0.98627 0.90451 1.43663 1.09093 1.06522 1.71953 1.19130 1.13175 0.96113 1.10623 0.91846 1.24997 1.00787 0.98321 0.94964 1.70047 1.33237 1.41557 1.09895 0.86421 0.81658 0.81675 0.77321 1.20988 1.21671 1.20993 1.20922 0.99288 0.81848 0.92175 1.22431 0.99991 1.00937 0.95271 0.92348 0.92567 0.92758 0.91861 0.91465 0.88107 0.88336 0.77620 0.92854 0.93477 0.93062 0.91977 0.95010 0.93591 0.93691 0.95715 0.90415 0.92679 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.87 37.16 0.37 -0.90 16 2 C -0.09 -0.83 6.22 -26.73 -0.17 -1.00 16 3 C -0.12 -1.39 5.25 -90.62 -0.48 -1.86 16 4 H 0.12 1.67 7.60 -51.93 -0.39 1.28 16 5 C -0.15 -1.57 9.88 -26.73 -0.26 -1.83 16 6 C -0.19 -2.25 5.91 -91.77 -0.54 -2.79 16 7 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 8 C 0.53 8.87 7.43 -10.99 -0.08 8.78 16 9 O -0.53 -11.56 15.92 5.55 0.09 -11.47 16 10 N -0.73 -10.93 4.93 -55.06 -0.27 -11.20 16 11 C 0.15 2.84 2.06 -69.21 -0.14 2.69 16 12 H 0.10 2.37 6.92 -51.93 -0.36 2.01 16 13 C -0.11 -1.67 4.69 -29.79 -0.14 -1.81 16 14 C -0.15 -2.56 5.74 -28.59 -0.16 -2.72 16 15 C 0.16 3.27 5.66 -4.08 -0.02 3.25 16 16 N -0.59 -14.97 2.27 -172.12 -0.39 -15.36 16 17 C -0.26 -7.34 9.44 -15.06 -0.14 -7.48 16 18 H 0.06 1.75 7.88 -52.48 -0.41 1.34 16 19 C 0.01 0.23 4.87 -17.43 -0.08 0.15 16 20 N -0.90 -27.17 11.01 55.49 0.61 -26.56 16 21 Si 0.90 22.83 29.58 -169.99 -5.03 17.80 16 22 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.18 4.60 4.66 -2.98 -0.01 4.58 16 26 C -0.15 -2.94 5.38 -27.33 -0.15 -3.08 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.79 8.03 -51.93 -0.42 0.38 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.39 4.45 8.60 -40.82 -0.35 4.10 16 35 H 0.05 0.78 7.36 -51.93 -0.38 0.40 16 36 H 0.05 0.65 8.04 -51.93 -0.42 0.23 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.02 0.67 8.03 -51.92 -0.42 0.25 16 43 H 0.08 2.26 6.33 -51.93 -0.33 1.93 16 44 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 45 H 0.04 0.82 7.32 -51.93 -0.38 0.44 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -32.44 353.44 -9.71 -42.16 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.03 Total: 3.32 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.02 Total: -4.02 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.05 Total: -53.12 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.44 -9.71 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052726642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.502 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds