Wall clock time and date at job start Tue Mar 31 2020 02:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46774 * 2 1 4 4 H 1.09000 * 115.55219 * 29.42149 * 3 2 1 5 5 C 1.53004 * 117.51482 * 243.71462 * 3 2 1 6 6 C 1.52998 * 59.99905 * 252.52087 * 5 3 2 7 7 H 1.08999 * 117.49885 * 107.49545 * 6 5 3 8 8 C 1.50704 * 117.51901 * 252.51671 * 6 5 3 9 9 O 1.21285 * 119.99344 * 68.63501 * 8 6 5 10 10 N 1.34768 * 120.00256 * 248.62895 * 8 6 5 11 11 C 1.46501 * 119.99847 * 179.97438 * 10 8 6 12 12 H 1.08991 * 109.49580 * 325.00557 * 11 10 8 13 13 C 1.52571 * 109.48947 * 204.95601 * 11 10 8 14 14 C 1.47092 * 114.32530 * 155.02498 * 13 11 10 15 15 C 1.54862 * 110.32511 * 62.80521 * 14 13 11 16 16 N 1.44583 * 109.59711 * 288.73405 * 15 14 13 17 17 C 1.36938 * 118.64203 * 270.72062 * 16 15 14 18 18 H 1.08005 * 120.00132 * 26.47959 * 17 16 15 19 19 C 1.38811 * 119.99904 * 206.47123 * 17 16 15 20 20 N 1.31621 * 119.99996 * 15.65212 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 195.65091 * 19 17 16 22 22 H 1.48498 * 109.47395 * 60.00186 * 21 19 17 23 23 H 1.48505 * 109.47221 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47153 * 300.00331 * 21 19 17 25 25 C 1.47604 * 122.71458 * 90.70162 * 16 15 14 26 26 C 1.50884 * 109.48959 * 85.05372 * 11 10 8 27 27 H 1.08999 * 109.47170 * 299.99759 * 1 2 3 28 28 H 1.08999 * 109.47251 * 60.00327 * 1 2 3 29 29 H 1.08999 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47170 * 240.00241 * 2 1 3 31 31 H 1.09001 * 109.47581 * 120.00088 * 2 1 3 32 32 H 1.09000 * 117.50189 * 0.02562 * 5 3 2 33 33 H 1.09000 * 117.49537 * 145.03136 * 5 3 2 34 34 H 0.96998 * 120.00224 * 0.02562 * 10 8 6 35 35 H 1.09007 * 108.51265 * 276.27577 * 13 11 10 36 36 H 1.08996 * 108.51307 * 33.92356 * 13 11 10 37 37 H 1.08997 * 109.32831 * 183.06456 * 14 13 11 38 38 H 1.08996 * 109.32932 * 302.54001 * 14 13 11 39 39 H 1.08999 * 109.45222 * 48.76945 * 15 14 13 40 40 H 1.09000 * 109.44873 * 168.72497 * 15 14 13 41 41 H 0.97002 * 119.99704 * 179.97438 * 20 19 17 42 42 H 1.09007 * 108.94332 * 78.57605 * 25 16 15 43 43 H 1.08991 * 108.94890 * 197.29014 * 25 16 15 44 44 H 1.09007 * 109.36386 * 332.04139 * 26 11 10 45 45 H 1.08996 * 109.36767 * 91.65403 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3890 2.1713 0.4831 5 6 2.8421 1.9087 -1.2167 6 6 3.5502 1.6579 0.1162 7 1 4.1806 0.7720 0.1922 8 6 4.0241 2.8611 0.8901 9 8 3.2176 3.6150 1.3924 10 7 5.3437 3.0992 1.0242 11 6 5.8043 4.2692 1.7761 12 1 5.1120 5.0966 1.6212 13 6 7.1942 4.6708 1.2917 14 6 7.5263 6.0869 1.5102 15 6 7.5407 6.4084 3.0250 16 7 6.1884 6.3955 3.5364 17 6 5.4644 7.5575 3.5072 18 1 5.6869 8.3139 2.7691 19 6 4.4445 7.7630 4.4261 20 7 4.3660 7.0087 5.5019 21 14 3.1834 9.1102 4.1360 22 1 2.4696 8.8535 2.8593 23 1 2.2074 9.1240 5.2552 24 1 3.8710 10.4245 4.0630 25 6 5.5558 5.1814 4.0883 26 6 5.8645 3.9315 3.2454 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.0063 1.1878 -2.0176 33 1 2.7188 2.9442 -1.5340 34 1 5.9887 2.4964 0.6222 35 1 7.9318 4.0583 1.8103 36 1 7.2622 4.4624 0.2240 37 1 8.5089 6.2965 1.0876 38 1 6.7830 6.7123 1.0158 39 1 8.1342 5.6595 3.5494 40 1 7.9785 7.3941 3.1827 41 1 3.6535 7.1526 6.1442 42 1 5.9204 5.0226 5.1033 43 1 4.4762 5.3277 4.1193 44 1 5.1324 3.1552 3.4682 45 1 6.8616 3.5666 3.4918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052726642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:29 Heat of formation + Delta-G solvation = -26.044133 kcal Electronic energy + Delta-G solvation = -22862.141376 eV Core-core repulsion = 19686.489381 eV Total energy + Delta-G solvation = -3175.651995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25540 -39.54954 -37.91582 -36.26999 -34.49116 -33.02072 -32.68758 -32.03559 -27.98356 -26.29798 -25.22057 -24.79185 -24.22948 -21.69786 -21.49679 -21.02242 -20.75834 -18.57932 -18.20750 -17.42180 -16.82502 -16.22457 -15.97481 -15.84127 -15.51454 -15.25452 -15.11723 -14.77744 -14.41744 -14.03499 -13.65129 -13.52217 -13.45432 -13.20459 -13.03069 -12.98767 -12.74572 -12.55291 -12.24039 -12.13006 -12.03541 -11.93255 -11.76704 -11.54417 -11.40842 -11.36748 -11.22672 -10.98674 -10.69365 -10.45314 -10.04230 -8.66181 -7.87639 -5.32871 1.38269 1.44186 1.48551 1.54690 2.19545 2.48569 2.87207 3.26922 3.63671 3.70293 3.76553 3.81584 3.88929 4.08132 4.21556 4.28173 4.38655 4.45480 4.46901 4.48634 4.57554 4.68418 4.77215 4.83393 4.92373 4.93952 4.98670 5.02770 5.14408 5.15503 5.21378 5.23677 5.24239 5.29658 5.35841 5.49255 5.50833 5.57717 5.63939 5.70608 5.75491 6.39447 6.66978 7.17016 7.38976 7.95256 8.33164 9.17322 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.004854 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.696333 B = 5767.544347 C = 6822.809230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.132 4.132 4 H 0.079 0.921 5 C -0.131 4.131 6 C -0.188 4.188 7 H 0.157 0.843 8 C 0.525 3.475 9 O -0.594 6.594 10 N -0.707 5.707 11 C 0.162 3.838 12 H 0.044 0.956 13 C -0.102 4.102 14 C -0.133 4.133 15 C 0.147 3.853 16 N -0.604 5.604 17 C -0.264 4.264 18 H 0.065 0.935 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.957 3.043 22 H -0.289 1.289 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.196 3.804 26 C -0.131 4.131 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.416 0.584 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.246 0.754 42 H -0.004 1.004 43 H 0.025 0.975 44 H 0.045 0.955 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -16.586 -15.335 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.151 4.151 4 H 0.098 0.902 5 C -0.168 4.168 6 C -0.208 4.208 7 H 0.175 0.825 8 C 0.313 3.687 9 O -0.475 6.475 10 N -0.358 5.358 11 C 0.057 3.943 12 H 0.063 0.937 13 C -0.140 4.140 14 C -0.173 4.173 15 C 0.021 3.979 16 N -0.327 5.327 17 C -0.395 4.395 18 H 0.083 0.917 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.192 1.192 25 C 0.071 3.929 26 C -0.171 4.171 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.014 0.986 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.361 -16.051 -14.832 21.982 hybrid contribution -0.845 1.008 0.563 1.431 sum 1.516 -15.043 -14.270 20.790 Atomic orbital electron populations 1.21758 0.95318 1.02309 1.01521 1.21138 0.96179 0.91773 1.03221 1.22486 0.91106 0.99591 1.01900 0.90239 1.23182 1.00265 1.03060 0.90341 1.22362 0.98103 0.98050 1.02313 0.82500 1.20524 0.82490 0.86174 0.79514 1.90760 1.55489 1.50639 1.50562 1.45991 1.06795 1.28259 1.54768 1.20158 0.96980 0.87004 0.90143 0.93725 1.20510 0.93869 0.97684 1.01905 1.21299 1.01380 0.96126 0.98526 1.20966 0.85003 0.99023 0.92909 1.43836 1.10896 1.05687 1.72247 1.19462 1.13347 0.96849 1.09804 0.91745 1.25723 1.02796 1.00833 0.95116 1.70205 1.33700 1.43400 1.10801 0.85494 0.79410 0.80058 0.76491 1.21624 1.21931 1.19194 1.20555 0.96048 0.84204 0.92139 1.22221 1.01206 0.97810 0.95827 0.94144 0.92426 0.91034 0.89181 0.91371 0.84147 0.90196 0.74677 0.90039 0.90214 0.89039 0.94652 0.93262 0.94268 0.94446 0.98572 0.95611 0.93601 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.87 71.98 0.71 -1.67 16 2 C -0.09 -1.33 6.22 30.59 0.19 -1.14 16 3 C -0.13 -2.94 5.25 -10.79 -0.06 -2.99 16 4 H 0.08 2.41 7.60 -2.39 -0.02 2.39 16 5 C -0.13 -2.40 9.88 30.59 0.30 -2.10 16 6 C -0.19 -4.07 5.91 -11.54 -0.07 -4.13 16 7 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 8 C 0.52 17.37 7.43 87.66 0.65 18.02 16 9 O -0.59 -27.64 15.92 -3.05 -0.05 -27.69 16 10 N -0.71 -20.03 4.93 -446.51 -2.20 -22.23 16 11 C 0.16 5.86 2.06 44.16 0.09 5.95 16 12 H 0.04 2.17 6.92 -2.39 -0.02 2.15 16 13 C -0.10 -2.85 4.69 28.61 0.13 -2.72 16 14 C -0.13 -4.31 5.74 29.39 0.17 -4.14 16 15 C 0.15 6.00 5.66 87.37 0.49 6.49 16 16 N -0.60 -31.47 2.27 -698.48 -1.59 -33.05 16 17 C -0.26 -15.39 9.44 84.03 0.79 -14.60 16 18 H 0.06 3.66 7.88 -2.91 -0.02 3.64 16 19 C -0.05 -2.98 4.87 84.86 0.41 -2.56 16 20 N -0.93 -59.36 11.01 21.65 0.24 -59.12 16 21 Si 0.96 48.87 29.58 68.60 2.03 50.89 16 22 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 23 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 C 0.20 10.35 4.66 86.47 0.40 10.75 16 26 C -0.13 -5.25 5.38 30.21 0.16 -5.09 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.95 7.88 -2.39 -0.02 0.93 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.14 1.51 8.03 -2.39 -0.02 1.49 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.42 7.74 8.60 -92.71 -0.80 6.95 16 35 H 0.08 1.92 7.36 -2.38 -0.02 1.90 16 36 H 0.08 1.79 8.04 -2.39 -0.02 1.77 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 40 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 41 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.00 -0.21 8.03 -2.38 -0.02 -0.23 16 43 H 0.03 1.60 6.33 -2.39 -0.02 1.58 16 44 H 0.05 1.90 7.84 -2.38 -0.02 1.88 16 45 H 0.08 2.59 7.32 -2.39 -0.02 2.57 16 Total: -1.00 -78.63 353.44 2.97 -75.65 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.16 Total: 15.49 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 4.39 Total: 0.05 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -3.55 Total: -114.40 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.89 kcal Total: -78.63 2.97 -75.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052726642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.606 kcal (2) G-P(sol) polarization free energy of solvation -78.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds