Wall clock time and date at job start Tue Mar 31 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 C 1.50703 * 109.47173 * 120.00099 * 2 1 3 5 5 O 1.21283 * 119.99492 * 274.68391 * 4 2 1 6 6 N 1.34774 * 119.99812 * 94.68521 * 4 2 1 7 7 C 1.46936 * 120.72177 * 354.57736 * 6 4 2 8 8 C 1.53183 * 108.90621 * 234.30752 * 7 6 4 9 9 C 1.53180 * 109.27760 * 304.61700 * 8 7 6 10 10 C 1.52070 * 109.73072 * 59.92859 * 9 8 7 11 11 C 1.54574 * 110.68007 * 64.31292 * 10 9 8 12 12 C 1.54470 * 102.75854 * 152.61615 * 11 10 9 13 13 N 1.47078 * 107.42960 * 338.69392 * 12 11 10 14 14 C 1.36932 * 125.63195 * 178.90977 * 13 12 11 15 15 H 1.08001 * 119.99961 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99848 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99763 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47263 * 90.00146 * 18 16 14 20 20 H 1.48501 * 109.46795 * 209.99741 * 18 16 14 21 21 H 1.48493 * 109.47212 * 329.99627 * 18 16 14 22 22 C 1.47578 * 108.74092 * 358.92907 * 13 12 11 23 23 C 1.47107 * 120.71243 * 174.56075 * 6 4 2 24 24 H 1.08997 * 109.47434 * 300.00031 * 1 2 3 25 25 H 1.08994 * 109.47147 * 60.00500 * 1 2 3 26 26 H 1.09004 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46962 * 239.99954 * 2 1 3 28 28 H 1.09006 * 109.46631 * 184.96781 * 3 2 1 29 29 H 1.08995 * 109.47036 * 304.96594 * 3 2 1 30 30 H 1.08992 * 109.47159 * 64.96812 * 3 2 1 31 31 H 1.09004 * 109.56501 * 114.48443 * 7 6 4 32 32 H 1.09003 * 109.56921 * 354.14006 * 7 6 4 33 33 H 1.09002 * 109.50634 * 184.67748 * 8 7 6 34 34 H 1.09004 * 109.53807 * 64.57710 * 8 7 6 35 35 H 1.08998 * 109.43116 * 299.84628 * 9 8 7 36 36 H 1.09001 * 109.43046 * 180.02562 * 9 8 7 37 37 H 1.08988 * 110.71173 * 34.34231 * 11 10 9 38 38 H 1.09006 * 110.86103 * 270.95714 * 11 10 9 39 39 H 1.09004 * 109.87602 * 219.18752 * 12 11 10 40 40 H 1.09006 * 109.87956 * 98.19419 * 12 11 10 41 41 H 0.97001 * 120.00051 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.37760 * 142.12332 * 22 13 12 43 43 H 1.09003 * 110.37348 * 264.47218 * 22 13 12 44 44 H 1.08997 * 109.56814 * 7.97026 * 23 6 4 45 45 H 1.09003 * 109.56330 * 247.61689 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1536 -0.1039 2.2737 6 7 2.3469 -2.0196 1.1715 7 6 2.0953 -2.7978 -0.0493 8 6 1.2526 -4.0257 0.3097 9 6 1.9621 -4.8220 1.4092 10 6 2.1388 -3.9496 2.6422 11 6 0.7663 -3.5658 3.2406 12 6 1.0932 -3.3528 4.7352 13 7 2.3417 -4.0761 5.0204 14 6 2.9803 -4.1184 6.2310 15 1 3.8965 -4.6800 6.3388 16 6 2.4501 -3.4396 7.3195 17 7 1.3333 -2.7557 7.1883 18 14 3.3217 -3.4968 8.9708 19 1 4.2904 -2.3746 9.0584 20 1 2.3224 -3.3745 10.0624 21 1 4.0451 -4.7868 9.1042 22 6 2.7928 -4.7483 3.7865 23 6 2.9498 -2.7004 2.3278 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1264 1.4438 -0.0890 29 1 1.6058 1.9813 -0.8421 30 1 1.7511 1.9300 0.9311 31 1 3.0439 -3.1192 -0.4793 32 1 1.5558 -2.1828 -0.7696 33 1 1.1300 -4.6536 -0.5729 34 1 0.2741 -3.7046 0.6667 35 1 2.9394 -5.1446 1.0502 36 1 1.3647 -5.6967 1.6663 37 1 0.0500 -4.3775 3.1142 38 1 0.3912 -2.6455 2.7926 39 1 0.2861 -3.7491 5.3513 40 1 1.2261 -2.2900 4.9377 41 1 0.9630 -2.2810 7.9488 42 1 3.8790 -4.7060 3.7066 43 1 2.4502 -5.7830 3.7711 44 1 2.9412 -2.0330 3.1895 45 1 3.9762 -2.9812 2.0916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054089612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:43 Heat of formation + Delta-G solvation = -20.366132 kcal Electronic energy + Delta-G solvation = -23855.492468 eV Core-core repulsion = 20680.086690 eV Total energy + Delta-G solvation = -3175.405778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42533 -38.42419 -35.80417 -34.43238 -32.90920 -31.83383 -29.85581 -28.59100 -27.26288 -25.97183 -25.51307 -23.69225 -22.54180 -21.79533 -20.06906 -18.79134 -18.00881 -17.30231 -16.64966 -15.62538 -15.19763 -14.82315 -14.46797 -14.39273 -13.93626 -13.80204 -13.53446 -13.18872 -13.00875 -12.70028 -12.42363 -12.29443 -12.09615 -12.01629 -11.80336 -11.60534 -11.28364 -11.17594 -10.99081 -10.87384 -10.79281 -10.71471 -10.51530 -10.07440 -9.95405 -9.84822 -9.60317 -9.51357 -9.31363 -8.49462 -8.34148 -6.72307 -5.60554 -2.94233 2.87712 3.19981 3.46717 3.50908 3.53188 4.51809 4.57701 4.74419 4.78422 4.93734 5.02974 5.08568 5.17910 5.28663 5.38172 5.48178 5.53251 5.60277 5.61853 5.66445 5.73059 5.75540 5.79656 5.88025 5.99790 6.04404 6.10156 6.10518 6.19201 6.19835 6.32057 6.38540 6.53798 6.59692 6.66126 6.82303 6.84925 6.97388 7.66483 7.67133 7.77019 7.96216 8.36814 8.46529 9.32019 9.92732 10.59295 11.50786 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.005417 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.438818 B = 5167.487053 C = 5930.444468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.137 4.137 4 C 0.514 3.486 5 O -0.529 6.529 6 N -0.610 5.610 7 C 0.106 3.894 8 C -0.133 4.133 9 C -0.101 4.101 10 C -0.086 4.086 11 C -0.127 4.127 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.148 3.852 23 C 0.133 3.867 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.047 0.953 41 H 0.251 0.749 42 H 0.037 0.963 43 H 0.021 0.979 44 H 0.104 0.896 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 0.905 -20.042 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 C -0.194 4.194 4 C 0.301 3.699 5 O -0.405 6.405 6 N -0.343 5.343 7 C -0.017 4.017 8 C -0.171 4.171 9 C -0.139 4.139 10 C -0.088 4.088 11 C -0.165 4.165 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.357 4.357 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.208 1.208 22 C 0.021 3.979 23 C 0.011 3.989 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.122 0.878 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.897 1.332 -19.235 19.302 hybrid contribution 0.398 -0.174 0.857 0.961 sum -0.500 1.158 -18.378 18.421 Atomic orbital electron populations 1.21732 0.92709 1.02514 1.02886 1.21325 0.97872 0.97766 0.96691 1.21678 1.00958 0.93957 1.02849 1.20619 0.77368 0.81686 0.90203 1.90750 1.52611 1.65656 1.31463 1.48205 1.62341 1.08944 1.14839 1.21740 0.99759 0.93358 0.86857 1.21925 0.99706 0.96448 0.99040 1.21316 1.00244 0.97853 0.94533 1.21442 0.97398 0.95105 0.94805 1.22804 0.94825 0.99586 0.99322 1.21150 0.88336 0.97025 0.88062 1.44506 1.25552 1.57443 1.05540 1.19028 1.04783 1.26507 0.85391 0.90556 1.24794 0.97598 0.99923 0.98057 1.69983 1.20654 1.36334 1.29694 0.86151 0.78421 0.77585 0.83792 1.21642 1.21754 1.20771 1.21420 0.96475 0.94054 0.85906 1.21414 0.94393 0.94118 0.88935 0.91614 0.91658 0.92230 0.89437 0.92619 0.92079 0.91143 0.91674 0.89992 0.91162 0.91288 0.92188 0.91599 0.92865 0.92551 0.94380 0.93472 0.93838 0.94471 0.96166 0.87794 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.10 37.16 0.34 -1.08 16 2 C -0.12 -1.29 2.46 -91.77 -0.23 -1.52 16 3 C -0.14 -1.48 8.94 37.16 0.33 -1.15 16 4 C 0.51 8.21 6.69 -10.99 -0.07 8.14 16 5 O -0.53 -11.18 15.60 5.56 0.09 -11.09 16 6 N -0.61 -8.99 2.60 -173.20 -0.45 -9.44 16 7 C 0.11 1.10 6.14 -3.71 -0.02 1.08 16 8 C -0.13 -1.41 5.92 -26.54 -0.16 -1.56 16 9 C -0.10 -1.33 4.64 -27.11 -0.13 -1.45 16 10 C -0.09 -1.49 0.56 -153.97 -0.09 -1.58 16 11 C -0.13 -2.51 4.92 -25.13 -0.12 -2.64 16 12 C 0.18 4.61 4.95 -2.96 -0.01 4.59 16 13 N -0.60 -15.90 3.39 -170.31 -0.58 -16.48 16 14 C -0.23 -6.59 10.28 -15.06 -0.15 -6.74 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 17 N -0.92 -28.35 10.30 55.49 0.57 -27.77 16 18 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 C 0.15 3.09 6.15 -2.87 -0.02 3.08 16 23 C 0.13 2.37 5.08 -4.10 -0.02 2.35 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 27 H 0.09 0.76 6.19 -51.92 -0.32 0.44 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.67 5.44 -51.93 -0.28 0.39 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.81 7.42 -51.93 -0.39 0.42 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.05 0.98 7.99 -51.94 -0.41 0.57 16 38 H 0.06 1.11 7.70 -51.93 -0.40 0.71 16 39 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 40 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 41 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.04 0.76 8.01 -51.93 -0.42 0.34 16 43 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 44 H 0.10 2.37 6.61 -51.93 -0.34 2.03 16 45 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -33.79 341.39 -8.61 -42.40 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.91 Total: -1.89 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.45 Total: 1.20 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.45 Total: -53.69 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.79 -8.61 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054089612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.030 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds