Wall clock time and date at job start Tue Mar 31 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 C 1.50703 * 109.47173 * 120.00099 * 2 1 3 5 5 O 1.21283 * 119.99492 * 274.68391 * 4 2 1 6 6 N 1.34774 * 119.99812 * 94.68521 * 4 2 1 7 7 C 1.46936 * 120.72177 * 354.57736 * 6 4 2 8 8 C 1.53183 * 108.90621 * 234.30752 * 7 6 4 9 9 C 1.53180 * 109.27760 * 304.61700 * 8 7 6 10 10 C 1.52070 * 109.73072 * 59.92859 * 9 8 7 11 11 C 1.54574 * 110.68007 * 64.31292 * 10 9 8 12 12 C 1.54470 * 102.75854 * 152.61615 * 11 10 9 13 13 N 1.47078 * 107.42960 * 338.69392 * 12 11 10 14 14 C 1.36932 * 125.63195 * 178.90977 * 13 12 11 15 15 H 1.08001 * 119.99961 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99848 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99763 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47263 * 90.00146 * 18 16 14 20 20 H 1.48501 * 109.46795 * 209.99741 * 18 16 14 21 21 H 1.48493 * 109.47212 * 329.99627 * 18 16 14 22 22 C 1.47578 * 108.74092 * 358.92907 * 13 12 11 23 23 C 1.47107 * 120.71243 * 174.56075 * 6 4 2 24 24 H 1.08997 * 109.47434 * 300.00031 * 1 2 3 25 25 H 1.08994 * 109.47147 * 60.00500 * 1 2 3 26 26 H 1.09004 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46962 * 239.99954 * 2 1 3 28 28 H 1.09006 * 109.46631 * 184.96781 * 3 2 1 29 29 H 1.08995 * 109.47036 * 304.96594 * 3 2 1 30 30 H 1.08992 * 109.47159 * 64.96812 * 3 2 1 31 31 H 1.09004 * 109.56501 * 114.48443 * 7 6 4 32 32 H 1.09003 * 109.56921 * 354.14006 * 7 6 4 33 33 H 1.09002 * 109.50634 * 184.67748 * 8 7 6 34 34 H 1.09004 * 109.53807 * 64.57710 * 8 7 6 35 35 H 1.08998 * 109.43116 * 299.84628 * 9 8 7 36 36 H 1.09001 * 109.43046 * 180.02562 * 9 8 7 37 37 H 1.08988 * 110.71173 * 34.34231 * 11 10 9 38 38 H 1.09006 * 110.86103 * 270.95714 * 11 10 9 39 39 H 1.09004 * 109.87602 * 219.18752 * 12 11 10 40 40 H 1.09006 * 109.87956 * 98.19419 * 12 11 10 41 41 H 0.97001 * 120.00051 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.37760 * 142.12332 * 22 13 12 43 43 H 1.09003 * 110.37348 * 264.47218 * 22 13 12 44 44 H 1.08997 * 109.56814 * 7.97026 * 23 6 4 45 45 H 1.09003 * 109.56330 * 247.61689 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1536 -0.1039 2.2737 6 7 2.3469 -2.0196 1.1715 7 6 2.0953 -2.7978 -0.0493 8 6 1.2526 -4.0257 0.3097 9 6 1.9621 -4.8220 1.4092 10 6 2.1388 -3.9496 2.6422 11 6 0.7663 -3.5658 3.2406 12 6 1.0932 -3.3528 4.7352 13 7 2.3417 -4.0761 5.0204 14 6 2.9803 -4.1184 6.2310 15 1 3.8965 -4.6800 6.3388 16 6 2.4501 -3.4396 7.3195 17 7 1.3333 -2.7557 7.1883 18 14 3.3217 -3.4968 8.9708 19 1 4.2904 -2.3746 9.0584 20 1 2.3224 -3.3745 10.0624 21 1 4.0451 -4.7868 9.1042 22 6 2.7928 -4.7483 3.7865 23 6 2.9498 -2.7004 2.3278 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1264 1.4438 -0.0890 29 1 1.6058 1.9813 -0.8421 30 1 1.7511 1.9300 0.9311 31 1 3.0439 -3.1192 -0.4793 32 1 1.5558 -2.1828 -0.7696 33 1 1.1300 -4.6536 -0.5729 34 1 0.2741 -3.7046 0.6667 35 1 2.9394 -5.1446 1.0502 36 1 1.3647 -5.6967 1.6663 37 1 0.0500 -4.3775 3.1142 38 1 0.3912 -2.6455 2.7926 39 1 0.2861 -3.7491 5.3513 40 1 1.2261 -2.2900 4.9377 41 1 0.9630 -2.2810 7.9488 42 1 3.8790 -4.7060 3.7066 43 1 2.4502 -5.7830 3.7711 44 1 2.9412 -2.0330 3.1895 45 1 3.9762 -2.9812 2.0916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054089612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:43 Heat of formation + Delta-G solvation = -42.478407 kcal Electronic energy + Delta-G solvation = -23856.451328 eV Core-core repulsion = 20680.086690 eV Total energy + Delta-G solvation = -3176.364639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69456 -39.88183 -37.31563 -35.52025 -34.60221 -33.20648 -31.58454 -30.41290 -28.10707 -27.57754 -26.85125 -25.43878 -23.61211 -22.99006 -22.02726 -20.10880 -19.34326 -18.58931 -18.40022 -16.94453 -16.78448 -16.48600 -15.89890 -15.78850 -15.22329 -15.07993 -14.97548 -14.41047 -14.04978 -13.98097 -13.95194 -13.62643 -13.49994 -13.35511 -13.07362 -12.97470 -12.86807 -12.77033 -12.38582 -12.12194 -12.05823 -12.03785 -11.92545 -11.85870 -11.70963 -11.57435 -11.27975 -11.07537 -10.73858 -10.56796 -9.56213 -8.91243 -7.86346 -5.22443 1.40353 1.44251 1.52516 1.67230 2.05903 2.47226 3.31712 3.51281 3.61263 3.70892 3.85219 3.90402 3.98111 4.11206 4.18375 4.22476 4.32331 4.43223 4.55561 4.58793 4.69528 4.75425 4.76684 4.84510 4.86603 4.88366 4.90840 4.93638 4.99153 5.02924 5.08445 5.13856 5.24696 5.30994 5.32277 5.42453 5.47878 5.51745 5.61072 5.64437 5.74426 6.17094 6.52836 7.07006 7.27250 7.76364 8.41544 9.24333 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.005417 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.438818 B = 5167.487053 C = 5930.444468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.501 3.499 5 O -0.599 6.599 6 N -0.607 5.607 7 C 0.098 3.902 8 C -0.128 4.128 9 C -0.097 4.097 10 C -0.069 4.069 11 C -0.108 4.108 12 C 0.193 3.807 13 N -0.625 5.625 14 C -0.241 4.241 15 H 0.087 0.913 16 C -0.073 4.073 17 N -0.956 5.956 18 Si 0.980 3.020 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.262 1.262 22 C 0.141 3.859 23 C 0.138 3.862 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.129 0.871 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.052 0.948 39 H -0.001 1.001 40 H -0.009 1.009 41 H 0.244 0.756 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.040 0.960 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -0.949 -24.197 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.291 3.709 5 O -0.479 6.479 6 N -0.339 5.339 7 C -0.023 4.023 8 C -0.166 4.166 9 C -0.135 4.135 10 C -0.071 4.071 11 C -0.147 4.147 12 C 0.067 3.933 13 N -0.351 5.351 14 C -0.370 4.370 15 H 0.104 0.896 16 C -0.265 4.265 17 N -0.605 5.605 18 Si 0.808 3.192 19 H -0.217 1.217 20 H -0.221 1.221 21 H -0.186 1.186 22 C 0.016 3.984 23 C 0.015 3.985 24 H 0.053 0.947 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.147 0.853 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.009 0.991 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.327 -0.582 -23.466 23.475 hybrid contribution 0.262 0.394 2.139 2.191 sum -0.065 -0.189 -21.327 21.328 Atomic orbital electron populations 1.21760 0.91664 1.03095 1.03099 1.21419 0.98514 0.97441 0.95242 1.21700 1.01092 0.94094 1.02545 1.21692 0.76283 0.81966 0.90955 1.90729 1.55515 1.67246 1.34430 1.48345 1.61249 1.08968 1.15298 1.22187 1.01650 0.93339 0.85132 1.21945 0.98513 0.96582 0.99549 1.21326 1.02213 0.97222 0.92715 1.21371 0.94595 0.95202 0.95922 1.22585 0.97048 1.00169 0.94850 1.20780 0.87377 0.93441 0.91688 1.44809 1.25722 1.57809 1.06807 1.19518 1.05021 1.25826 0.86615 0.89560 1.25743 0.98578 1.00123 1.02081 1.70256 1.22504 1.37581 1.30186 0.85050 0.77104 0.78188 0.78857 1.21661 1.22085 1.18599 1.21711 0.97172 0.94649 0.84909 1.21079 0.95764 0.93166 0.88517 0.94676 0.88147 0.91494 0.85335 0.92849 0.88594 0.94480 0.89100 0.86849 0.86898 0.92457 0.89878 0.90925 0.90831 0.92898 0.98324 0.99060 0.94717 0.93819 0.94711 0.94118 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.10 71.98 0.65 -1.80 16 2 C -0.11 -2.11 2.46 -11.54 -0.03 -2.14 16 3 C -0.14 -2.80 8.94 71.98 0.64 -2.16 16 4 C 0.50 16.10 6.69 87.66 0.59 16.68 16 5 O -0.60 -27.35 15.60 -3.04 -0.05 -27.40 16 6 N -0.61 -17.01 2.60 -820.27 -2.13 -19.14 16 7 C 0.10 1.53 6.14 86.36 0.53 2.06 16 8 C -0.13 -2.01 5.92 30.72 0.18 -1.83 16 9 C -0.10 -2.11 4.64 30.35 0.14 -1.97 16 10 C -0.07 -2.34 0.56 -51.83 -0.03 -2.37 16 11 C -0.11 -4.37 4.92 31.63 0.16 -4.22 16 12 C 0.19 10.66 4.95 86.77 0.43 11.09 16 13 N -0.63 -34.36 3.39 -692.73 -2.35 -36.71 16 14 C -0.24 -14.37 10.28 84.03 0.86 -13.51 16 15 H 0.09 4.84 7.83 -2.91 -0.02 4.81 16 16 C -0.07 -4.47 5.49 84.86 0.47 -4.00 16 17 N -0.96 -63.01 10.30 21.65 0.22 -62.79 16 18 Si 0.98 48.92 29.55 68.60 2.03 50.95 16 19 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 20 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 21 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 22 C 0.14 5.83 6.15 86.55 0.53 6.36 16 23 C 0.14 4.96 5.08 86.01 0.44 5.40 16 24 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.09 8.04 -2.39 -0.02 1.07 16 27 H 0.13 1.54 6.19 -2.38 -0.01 1.53 16 28 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.00 7.68 -2.39 -0.02 0.98 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.11 1.12 5.44 -2.39 -0.01 1.11 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.08 7.42 -2.38 -0.02 1.06 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 37 H 0.07 2.67 7.99 -2.39 -0.02 2.65 16 38 H 0.05 2.17 7.70 -2.38 -0.02 2.15 16 39 H 0.00 -0.09 7.50 -2.38 -0.02 -0.11 16 40 H -0.01 -0.58 7.38 -2.38 -0.02 -0.60 16 41 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.04 1.75 8.01 -2.39 -0.02 1.73 16 43 H 0.04 1.37 8.00 -2.39 -0.02 1.35 16 44 H 0.04 2.00 6.61 -2.39 -0.02 1.98 16 45 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 Total: -1.00 -84.52 341.39 4.23 -80.29 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.94 Total: 7.20 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.56 Total: 7.59 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -4.25 Total: -118.63 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -84.52 4.23 -80.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054089612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.807 kcal (2) G-P(sol) polarization free energy of solvation -84.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds