Wall clock time and date at job start Tue Mar 31 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47325 * 2 1 4 4 C 1.52997 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.55295 * 29.33180 * 4 3 2 6 6 C 1.52997 * 117.49797 * 243.61606 * 4 3 2 7 7 C 1.53000 * 60.00347 * 252.51337 * 6 4 3 8 8 H 1.09004 * 117.49237 * 107.48843 * 7 6 4 9 9 C 1.50696 * 117.50175 * 252.51187 * 7 6 4 10 10 O 1.21279 * 120.00205 * 68.61876 * 9 7 6 11 11 N 1.34777 * 119.99769 * 248.62488 * 9 7 6 12 12 C 1.47419 * 125.65285 * 359.68634 * 11 9 7 13 13 C 1.55125 * 104.72657 * 155.81846 * 12 11 9 14 14 C 1.55162 * 101.48144 * 37.29735 * 13 12 11 15 15 H 1.08997 * 110.86985 * 205.89438 * 14 13 12 16 16 N 1.46500 * 110.71717 * 82.69579 * 14 13 12 17 17 C 1.36945 * 119.99776 * 91.48024 * 16 14 13 18 18 H 1.07995 * 120.00259 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99704 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47282 * 89.99729 * 21 19 17 23 23 H 1.48500 * 109.47079 * 209.99633 * 21 19 17 24 24 H 1.48502 * 109.47270 * 329.99724 * 21 19 17 25 25 C 1.47025 * 125.64637 * 179.97438 * 11 9 7 26 26 H 1.08998 * 109.88512 * 300.44166 * 25 11 9 27 27 C 1.53002 * 109.88141 * 61.60151 * 25 11 9 28 28 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47095 * 300.00618 * 1 2 3 30 30 H 1.09006 * 109.46793 * 60.00451 * 1 2 3 31 31 H 1.08995 * 109.47661 * 239.99526 * 2 1 3 32 32 H 1.09006 * 109.46793 * 119.99549 * 2 1 3 33 33 H 1.09002 * 109.47026 * 59.99600 * 3 2 1 34 34 H 1.08997 * 109.46999 * 299.99678 * 3 2 1 35 35 H 1.09002 * 117.49910 * 145.02477 * 6 4 3 36 36 H 1.09002 * 117.49884 * 0.02562 * 6 4 3 37 37 H 1.08996 * 110.36969 * 274.75487 * 12 11 9 38 38 H 1.09010 * 110.36561 * 37.07100 * 12 11 9 39 39 H 1.09000 * 111.19701 * 279.19493 * 13 12 11 40 40 H 1.08998 * 110.90694 * 155.27543 * 13 12 11 41 41 H 0.96998 * 120.00317 * 271.46884 * 16 14 13 42 42 H 0.96997 * 120.00276 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47369 * 58.54671 * 27 25 11 44 44 H 1.08999 * 109.47114 * 178.54246 * 27 25 11 45 45 H 1.08995 * 109.47571 * 298.54745 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0403 0.5850 -0.4808 6 6 4.2760 2.0456 1.2166 7 6 4.2766 2.7944 -0.1176 8 1 3.6513 3.6839 -0.1958 9 6 5.5696 2.8385 -0.8903 10 8 6.0124 1.8260 -1.3899 11 7 6.2342 4.0032 -1.0259 12 6 5.8087 5.3041 -0.4783 13 6 7.1186 6.1247 -0.3482 14 6 7.8922 5.6745 -1.6156 15 1 8.9676 5.7784 -1.4715 16 7 7.4526 6.4345 -2.7884 17 6 8.0985 7.5908 -3.1365 18 1 8.9316 7.9427 -2.5463 19 6 7.6815 8.3112 -4.2474 20 7 6.6658 7.8826 -4.9664 21 14 8.5620 9.8888 -4.7219 22 1 9.6750 9.5737 -5.6532 23 1 7.6051 10.8088 -5.3876 24 1 9.1060 10.5382 -3.5022 25 6 7.5006 4.1879 -1.7495 26 1 8.2745 3.5593 -1.3089 27 6 7.3135 3.8302 -3.2253 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 5.2109 1.5850 1.5356 36 1 3.6504 2.4422 2.0163 37 1 5.1167 5.7956 -1.1621 38 1 5.3462 5.1710 0.4999 39 1 7.6630 5.8571 0.5574 40 1 6.9118 7.1945 -0.3761 41 1 6.7041 6.1186 -3.3184 42 1 6.3747 8.3858 -5.7429 43 1 6.5340 4.4590 -3.6556 44 1 8.2489 3.9941 -3.7603 45 1 7.0243 2.7829 -3.3116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074862357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:55 Heat of formation + Delta-G solvation = -10.561778 kcal Electronic energy + Delta-G solvation = -22378.808827 eV Core-core repulsion = 19203.828197 eV Total energy + Delta-G solvation = -3174.980630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.12756 -38.25398 -36.65614 -34.03778 -33.91150 -31.55361 -30.74914 -28.94783 -27.59045 -25.18424 -24.40721 -23.43872 -22.21772 -21.70645 -20.64874 -19.40657 -18.39633 -17.52143 -16.80021 -16.07306 -15.41502 -15.03658 -14.87231 -14.42806 -13.83469 -13.80565 -13.59461 -13.22101 -13.17804 -12.75089 -12.59201 -12.35041 -12.23699 -12.04430 -11.71979 -11.47980 -11.26012 -11.20512 -11.02562 -10.98336 -10.91668 -10.75273 -10.62464 -10.31020 -10.21634 -10.09123 -10.00286 -9.62493 -9.40735 -8.96695 -8.25814 -7.03622 -5.82636 -3.12172 2.71898 3.24756 3.40146 3.45606 3.47106 3.81986 4.41993 4.53871 4.67291 4.72682 4.88625 4.97023 5.01873 5.11150 5.16915 5.33597 5.35079 5.47434 5.54271 5.58086 5.61386 5.62505 5.64405 5.70044 5.78165 5.84017 5.87070 5.89748 6.02054 6.03944 6.07305 6.16622 6.27560 6.37378 6.43822 6.53729 6.63721 6.76443 6.89999 7.04504 7.65473 7.91148 8.35597 8.49020 9.47251 10.02705 10.37820 11.39608 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.003413 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.703464 B = 8202.468403 C = 8483.491234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.183 4.183 8 H 0.121 0.879 9 C 0.555 3.445 10 O -0.549 6.549 11 N -0.604 5.604 12 C 0.106 3.894 13 C -0.159 4.159 14 C 0.171 3.829 15 H 0.070 0.930 16 N -0.714 5.714 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.126 3.874 26 H 0.069 0.931 27 C -0.148 4.148 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.388 0.612 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 -11.296 13.074 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.128 4.128 4 C -0.137 4.137 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.204 4.204 8 H 0.139 0.861 9 C 0.344 3.656 10 O -0.428 6.428 11 N -0.337 5.337 12 C -0.017 4.017 13 C -0.201 4.201 14 C 0.059 3.941 15 H 0.088 0.912 16 N -0.356 5.356 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.022 3.978 26 H 0.087 0.913 27 C -0.207 4.207 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.906 -11.724 12.755 19.043 hybrid contribution 0.161 1.071 -0.489 1.189 sum -7.745 -10.653 12.266 17.998 Atomic orbital electron populations 1.21784 0.95945 1.01532 1.01802 1.21498 0.95572 0.96585 1.02277 1.21243 0.92045 0.97255 1.02227 1.22428 0.94539 0.95738 1.01029 0.86530 1.23062 1.02936 1.02352 0.90369 1.22286 0.97885 0.98527 1.01721 0.86134 1.19208 0.84288 0.82027 0.80072 1.90648 1.68802 1.33635 1.49690 1.48558 1.24072 1.07874 1.53182 1.22329 0.98323 0.83203 0.97805 1.23547 0.95990 1.00772 0.99743 1.21198 0.97065 0.87837 0.87974 0.91241 1.42562 1.38690 1.25879 1.28445 1.19245 1.10976 0.99028 1.08213 0.91031 1.24749 0.98488 0.99330 0.98101 1.69659 1.28292 1.40379 1.19490 0.86191 0.78618 0.83132 0.78208 1.21701 1.21825 1.20747 1.22009 0.84786 0.98061 0.92915 0.91323 1.21914 1.03102 1.00856 0.94797 0.92830 0.92832 0.92688 0.91785 0.91906 0.91713 0.91324 0.88491 0.88048 0.91154 0.91667 0.92055 0.89475 0.77533 0.93420 0.91592 0.91557 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.00 5.89 -26.73 -0.16 -1.16 16 3 C -0.09 -0.82 5.50 -26.73 -0.15 -0.97 16 4 C -0.12 -1.33 5.25 -90.62 -0.48 -1.81 16 5 H 0.12 1.51 7.60 -51.93 -0.39 1.11 16 6 C -0.15 -1.55 9.88 -26.73 -0.26 -1.82 16 7 C -0.18 -2.33 4.98 -91.77 -0.46 -2.79 16 8 H 0.12 1.41 7.77 -51.93 -0.40 1.00 16 9 C 0.56 9.30 7.43 -10.99 -0.08 9.22 16 10 O -0.55 -10.84 15.29 5.56 0.09 -10.75 16 11 N -0.60 -10.10 3.06 -162.89 -0.50 -10.60 16 12 C 0.11 1.61 6.46 -2.42 -0.02 1.60 16 13 C -0.16 -2.58 6.78 -24.46 -0.17 -2.74 16 14 C 0.17 3.27 3.48 -66.10 -0.23 3.04 16 15 H 0.07 1.32 8.09 -51.93 -0.42 0.89 16 16 N -0.71 -16.91 4.54 -51.65 -0.23 -17.14 16 17 C -0.24 -6.43 9.96 -15.05 -0.15 -6.58 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 21 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C 0.13 2.28 3.43 -66.95 -0.23 2.05 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 C -0.15 -2.91 8.51 37.16 0.32 -2.60 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.81 7.66 -51.92 -0.40 0.41 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.39 9.93 5.67 -40.82 -0.23 9.70 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.07 1.43 6.20 -51.93 -0.32 1.11 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.05 1.06 6.88 -51.93 -0.36 0.70 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -30.03 359.40 -9.29 -39.32 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.97 Total: 9.26 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.78 Total: -5.68 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.01 Total: -54.34 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.03 -9.29 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074862357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.758 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds