Wall clock time and date at job start Tue Mar 31 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47325 * 2 1 4 4 C 1.52997 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.55295 * 29.33180 * 4 3 2 6 6 C 1.52997 * 117.49797 * 243.61606 * 4 3 2 7 7 C 1.53000 * 60.00347 * 252.51337 * 6 4 3 8 8 H 1.09004 * 117.49237 * 107.48843 * 7 6 4 9 9 C 1.50696 * 117.50175 * 252.51187 * 7 6 4 10 10 O 1.21279 * 120.00205 * 68.61876 * 9 7 6 11 11 N 1.34777 * 119.99769 * 248.62488 * 9 7 6 12 12 C 1.47419 * 125.65285 * 359.68634 * 11 9 7 13 13 C 1.55125 * 104.72657 * 155.81846 * 12 11 9 14 14 C 1.55162 * 101.48144 * 37.29735 * 13 12 11 15 15 H 1.08997 * 110.86985 * 205.89438 * 14 13 12 16 16 N 1.46500 * 110.71717 * 82.69579 * 14 13 12 17 17 C 1.36945 * 119.99776 * 91.48024 * 16 14 13 18 18 H 1.07995 * 120.00259 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99704 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47282 * 89.99729 * 21 19 17 23 23 H 1.48500 * 109.47079 * 209.99633 * 21 19 17 24 24 H 1.48502 * 109.47270 * 329.99724 * 21 19 17 25 25 C 1.47025 * 125.64637 * 179.97438 * 11 9 7 26 26 H 1.08998 * 109.88512 * 300.44166 * 25 11 9 27 27 C 1.53002 * 109.88141 * 61.60151 * 25 11 9 28 28 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47095 * 300.00618 * 1 2 3 30 30 H 1.09006 * 109.46793 * 60.00451 * 1 2 3 31 31 H 1.08995 * 109.47661 * 239.99526 * 2 1 3 32 32 H 1.09006 * 109.46793 * 119.99549 * 2 1 3 33 33 H 1.09002 * 109.47026 * 59.99600 * 3 2 1 34 34 H 1.08997 * 109.46999 * 299.99678 * 3 2 1 35 35 H 1.09002 * 117.49910 * 145.02477 * 6 4 3 36 36 H 1.09002 * 117.49884 * 0.02562 * 6 4 3 37 37 H 1.08996 * 110.36969 * 274.75487 * 12 11 9 38 38 H 1.09010 * 110.36561 * 37.07100 * 12 11 9 39 39 H 1.09000 * 111.19701 * 279.19493 * 13 12 11 40 40 H 1.08998 * 110.90694 * 155.27543 * 13 12 11 41 41 H 0.96998 * 120.00317 * 271.46884 * 16 14 13 42 42 H 0.96997 * 120.00276 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47369 * 58.54671 * 27 25 11 44 44 H 1.08999 * 109.47114 * 178.54246 * 27 25 11 45 45 H 1.08995 * 109.47571 * 298.54745 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0403 0.5850 -0.4808 6 6 4.2760 2.0456 1.2166 7 6 4.2766 2.7944 -0.1176 8 1 3.6513 3.6839 -0.1958 9 6 5.5696 2.8385 -0.8903 10 8 6.0124 1.8260 -1.3899 11 7 6.2342 4.0032 -1.0259 12 6 5.8087 5.3041 -0.4783 13 6 7.1186 6.1247 -0.3482 14 6 7.8922 5.6745 -1.6156 15 1 8.9676 5.7784 -1.4715 16 7 7.4526 6.4345 -2.7884 17 6 8.0985 7.5908 -3.1365 18 1 8.9316 7.9427 -2.5463 19 6 7.6815 8.3112 -4.2474 20 7 6.6658 7.8826 -4.9664 21 14 8.5620 9.8888 -4.7219 22 1 9.6750 9.5737 -5.6532 23 1 7.6051 10.8088 -5.3876 24 1 9.1060 10.5382 -3.5022 25 6 7.5006 4.1879 -1.7495 26 1 8.2745 3.5593 -1.3089 27 6 7.3135 3.8302 -3.2253 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 5.2109 1.5850 1.5356 36 1 3.6504 2.4422 2.0163 37 1 5.1167 5.7956 -1.1621 38 1 5.3462 5.1710 0.4999 39 1 7.6630 5.8571 0.5574 40 1 6.9118 7.1945 -0.3761 41 1 6.7041 6.1186 -3.3184 42 1 6.3747 8.3858 -5.7429 43 1 6.5340 4.4590 -3.6556 44 1 8.2489 3.9941 -3.7603 45 1 7.0243 2.7829 -3.3116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074862357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:55 Heat of formation + Delta-G solvation = -26.879506 kcal Electronic energy + Delta-G solvation = -22379.516417 eV Core-core repulsion = 19203.828197 eV Total energy + Delta-G solvation = -3175.688219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43021 -39.48416 -37.82701 -35.73960 -34.73619 -33.30999 -32.22372 -30.64283 -28.34157 -26.75837 -25.81452 -25.10570 -23.18912 -22.67705 -21.52360 -20.81517 -19.67990 -19.40992 -18.11367 -17.52352 -16.50738 -16.32088 -15.99933 -15.80159 -15.56205 -15.13504 -14.74556 -14.57012 -14.28180 -14.07701 -13.81748 -13.66122 -13.28026 -13.11480 -12.94830 -12.91429 -12.86617 -12.55419 -12.36562 -12.25255 -12.18322 -12.05591 -11.93122 -11.68976 -11.64206 -11.46886 -11.15566 -10.96721 -10.90711 -10.69627 -9.64210 -8.99960 -7.91978 -5.20356 1.49014 1.49942 1.50909 1.58984 1.98176 2.57850 2.86517 3.36393 3.45241 3.71934 3.77337 3.84799 3.86865 3.97561 4.18737 4.22056 4.27036 4.29337 4.31491 4.38022 4.40585 4.56718 4.64899 4.73092 4.79009 4.84899 4.88919 4.93308 4.94989 5.00325 5.05629 5.08612 5.20945 5.21917 5.31899 5.37166 5.39105 5.41762 5.46591 5.52955 5.57158 6.29298 6.60127 7.17099 7.36519 8.10017 8.33950 9.31392 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.003413 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.703464 B = 8202.468403 C = 8483.491234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.120 4.120 5 H 0.093 0.907 6 C -0.125 4.125 7 C -0.197 4.197 8 H 0.136 0.864 9 C 0.548 3.452 10 O -0.587 6.587 11 N -0.605 5.605 12 C 0.110 3.890 13 C -0.146 4.146 14 C 0.163 3.837 15 H 0.074 0.926 16 N -0.725 5.725 17 C -0.235 4.235 18 H 0.081 0.919 19 C -0.074 4.074 20 N -0.970 5.970 21 Si 0.970 3.030 22 H -0.292 1.292 23 H -0.300 1.300 24 H -0.266 1.266 25 C 0.130 3.870 26 H 0.078 0.922 27 C -0.135 4.135 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.376 0.624 42 H 0.249 0.751 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -11.089 15.905 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.122 4.122 4 C -0.139 4.139 5 H 0.111 0.889 6 C -0.162 4.162 7 C -0.218 4.218 8 H 0.153 0.847 9 C 0.339 3.661 10 O -0.469 6.469 11 N -0.337 5.337 12 C -0.012 4.012 13 C -0.187 4.187 14 C 0.053 3.947 15 H 0.092 0.908 16 N -0.366 5.366 17 C -0.366 4.366 18 H 0.099 0.901 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.800 3.200 22 H -0.220 1.220 23 H -0.227 1.227 24 H -0.191 1.191 25 C 0.025 3.975 26 H 0.096 0.904 27 C -0.194 4.194 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.210 0.790 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.290 -11.520 15.650 21.128 hybrid contribution 0.332 0.896 -1.333 1.640 sum -7.958 -10.624 14.317 19.524 Atomic orbital electron populations 1.21771 0.95011 1.02038 1.02082 1.21491 0.96358 0.96049 1.02022 1.21235 0.90299 0.97875 1.02792 1.22448 0.95810 0.94009 1.01620 0.88880 1.23192 1.02839 1.00256 0.89941 1.22280 0.96146 0.99970 1.03361 0.84656 1.19966 0.85201 0.81236 0.79695 1.90627 1.70031 1.34896 1.51307 1.48624 1.23567 1.08625 1.52918 1.22369 0.97648 0.81979 0.99168 1.23397 0.96062 1.00193 0.99003 1.21418 0.97660 0.87891 0.87752 0.90814 1.42687 1.38252 1.25742 1.29908 1.19641 1.10355 0.99196 1.07441 0.90091 1.25503 0.99725 1.02630 0.98799 1.69822 1.30337 1.41771 1.20152 0.85182 0.77109 0.79641 0.78054 1.21962 1.22718 1.19118 1.21854 0.86139 0.97528 0.91931 0.90356 1.21748 1.01660 0.99776 0.96173 0.92278 0.91902 0.93042 0.92997 0.91299 0.89771 0.92056 0.89054 0.84807 0.92968 0.87783 0.88947 0.90580 0.78963 0.94234 0.94110 0.92336 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.81 5.89 30.60 0.18 -1.63 16 3 C -0.08 -1.36 5.50 30.59 0.17 -1.20 16 4 C -0.12 -2.51 5.25 -10.79 -0.06 -2.57 16 5 H 0.09 2.41 7.60 -2.39 -0.02 2.40 16 6 C -0.13 -2.19 9.88 30.59 0.30 -1.89 16 7 C -0.20 -4.61 4.98 -11.54 -0.06 -4.67 16 8 H 0.14 2.78 7.77 -2.38 -0.02 2.76 16 9 C 0.55 17.93 7.43 87.66 0.65 18.58 16 10 O -0.59 -23.40 15.29 -3.03 -0.05 -23.44 16 11 N -0.61 -19.55 3.06 -787.64 -2.41 -21.97 16 12 C 0.11 3.11 6.46 86.93 0.56 3.67 16 13 C -0.15 -4.37 6.78 32.06 0.22 -4.15 16 14 C 0.16 6.05 3.48 46.18 0.16 6.21 16 15 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 16 N -0.72 -34.56 4.54 -317.33 -1.44 -36.00 16 17 C -0.23 -12.34 9.96 84.03 0.84 -11.51 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 20 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 21 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 C 0.13 4.64 3.43 45.34 0.16 4.79 16 26 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 27 C -0.14 -5.47 8.51 71.98 0.61 -4.86 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 1.05 7.87 -2.39 -0.02 1.03 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.13 1.52 8.03 -2.39 -0.02 1.51 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 2.17 7.66 -2.38 -0.02 2.15 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.38 19.77 5.67 -92.71 -0.53 19.25 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.04 1.84 6.20 -2.38 -0.01 1.82 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.05 1.96 6.88 -2.39 -0.02 1.94 16 Total: -1.00 -66.12 359.40 3.75 -62.37 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.42 Total: 34.12 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.91 Total: -4.08 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.57 Total: -116.11 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.12 3.75 -62.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074862357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.491 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds