Wall clock time and date at job start Tue Mar 31 2020 01:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46710 * 2 1 4 4 C 1.52996 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.09008 * 115.56055 * 29.29399 * 4 3 2 6 6 C 1.53000 * 117.49997 * 243.60886 * 4 3 2 7 7 C 1.53002 * 60.02940 * 252.49592 * 6 4 3 8 8 H 1.09000 * 117.49996 * 107.50493 * 7 6 4 9 9 C 1.50706 * 117.49668 * 252.51929 * 7 6 4 10 10 O 1.21277 * 120.00023 * 68.61167 * 9 7 6 11 11 N 1.34780 * 119.99945 * 248.60941 * 9 7 6 12 12 C 1.46496 * 119.99685 * 180.02562 * 11 9 7 13 13 H 1.08999 * 110.64558 * 36.69155 * 12 11 9 14 14 C 1.54325 * 110.72169 * 273.54733 * 12 11 9 15 15 N 1.47023 * 107.27034 * 219.44780 * 14 12 11 16 16 C 1.36938 * 125.64917 * 178.97566 * 15 14 12 17 17 H 1.07994 * 120.00627 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99719 * 359.97303 * 16 15 14 19 19 N 1.31618 * 120.00028 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99893 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46991 * 119.99998 * 20 18 16 23 23 H 1.48502 * 109.47114 * 240.00093 * 20 18 16 24 24 C 1.47424 * 108.70565 * 358.93931 * 15 14 12 25 25 C 1.54910 * 104.83127 * 24.12761 * 24 15 14 26 26 H 1.08999 * 111.00158 * 81.06392 * 25 24 15 27 27 C 1.52995 * 111.00542 * 204.91784 * 25 24 15 28 28 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47253 * 299.99754 * 1 2 3 30 30 H 1.08997 * 109.46735 * 60.00582 * 1 2 3 31 31 H 1.08997 * 109.47665 * 239.99919 * 2 1 3 32 32 H 1.09000 * 109.47623 * 119.99342 * 2 1 3 33 33 H 1.08999 * 109.47637 * 59.99629 * 3 2 1 34 34 H 1.09004 * 109.47028 * 299.99914 * 3 2 1 35 35 H 1.09002 * 117.49833 * 359.97438 * 6 4 3 36 36 H 1.09002 * 117.49953 * 144.99738 * 6 4 3 37 37 H 0.96998 * 119.99800 * 0.02562 * 11 9 7 38 38 H 1.09004 * 109.88063 * 338.86128 * 14 12 11 39 39 H 1.08998 * 109.88688 * 99.87400 * 14 12 11 40 40 H 0.96997 * 119.99729 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.36837 * 142.96883 * 24 15 14 42 42 H 1.09002 * 110.36521 * 265.29136 * 24 15 14 43 43 H 1.08997 * 109.47338 * 172.19630 * 27 25 24 44 44 H 1.08996 * 109.47193 * 292.19985 * 27 25 24 45 45 H 1.09005 * 109.47509 * 52.19574 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 4.0401 0.5852 -0.4821 6 6 4.2768 2.0458 1.2148 7 6 4.2769 2.7952 -0.1191 8 1 3.6521 3.6850 -0.1966 9 6 5.5696 2.8391 -0.8925 10 8 6.0118 1.8266 -1.3926 11 7 6.2344 4.0037 -1.0283 12 6 7.4908 4.0465 -1.7805 13 1 7.4493 3.3729 -2.6364 14 6 8.6856 3.6972 -0.8682 15 7 9.7944 4.5877 -1.2412 16 6 11.0312 4.6113 -0.6539 17 1 11.7813 5.3059 -1.0022 18 6 11.3208 3.7425 0.3893 19 7 10.4066 2.8963 0.8141 20 14 13.0082 3.7741 1.1900 21 1 13.8480 4.8086 0.5342 22 1 12.8654 4.0949 2.6329 23 1 13.6524 2.4446 1.0398 24 6 9.3546 5.4504 -2.3528 25 6 7.8108 5.4958 -2.2327 26 1 7.4987 6.2182 -1.4785 27 6 7.1643 5.8038 -3.5847 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8935 -0.5138 -0.8899 32 1 1.8935 -0.5137 0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.6519 2.4429 2.0148 36 1 5.2119 1.5850 1.5332 37 1 5.8810 4.8134 -0.6279 38 1 8.4150 3.8591 0.1752 39 1 8.9755 2.6574 -1.0188 40 1 10.6089 2.2895 1.5433 41 1 9.7730 6.4511 -2.2449 42 1 9.6481 5.0166 -3.3087 43 1 6.0829 5.6936 -3.5039 44 1 7.4045 6.8257 -3.8779 45 1 7.5449 5.1114 -4.3356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080407454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:41 Heat of formation + Delta-G solvation = -8.967199 kcal Electronic energy + Delta-G solvation = -22214.187121 eV Core-core repulsion = 19039.275637 eV Total energy + Delta-G solvation = -3174.911484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.79596 -38.01760 -36.70787 -33.94032 -33.81596 -32.53992 -30.35038 -28.21079 -27.36239 -25.63610 -24.33271 -22.97392 -22.04903 -20.71167 -20.29715 -19.86830 -19.23292 -16.98489 -16.84124 -15.84737 -15.35398 -14.94647 -14.77194 -14.39771 -14.05270 -13.65450 -13.43699 -13.21286 -12.89224 -12.76540 -12.62948 -12.32354 -12.07280 -11.91555 -11.67720 -11.43785 -11.32026 -11.12936 -11.01183 -10.96308 -10.77768 -10.59074 -10.34821 -10.18649 -10.00669 -9.92933 -9.88526 -9.69039 -9.35395 -8.59500 -8.40369 -6.80532 -5.66389 -3.01729 2.87662 3.41810 3.46361 3.48798 3.50010 3.96383 4.51363 4.56516 4.77623 4.82285 4.97279 5.02272 5.08636 5.19199 5.27340 5.34171 5.40063 5.47260 5.56381 5.57396 5.64073 5.71291 5.74119 5.79372 5.88027 5.99326 6.02029 6.03499 6.10534 6.11969 6.17524 6.23304 6.35341 6.38077 6.52435 6.64857 6.84342 6.98311 7.60768 7.63385 7.88877 8.00476 8.28689 8.69588 9.24511 9.85237 10.50369 11.44128 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.003812 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.681918 B = 7344.160070 C = 8481.170521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.121 4.121 5 H 0.117 0.883 6 C -0.148 4.148 7 C -0.188 4.188 8 H 0.118 0.882 9 C 0.540 3.460 10 O -0.540 6.540 11 N -0.710 5.710 12 C 0.121 3.879 13 H 0.085 0.915 14 C 0.174 3.826 15 N -0.607 5.607 16 C -0.230 4.230 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.141 3.859 25 C -0.114 4.114 26 H 0.077 0.923 27 C -0.137 4.137 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.395 0.605 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.251 0.749 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 1.452 -2.245 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.126 4.126 4 C -0.140 4.140 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.209 4.209 8 H 0.136 0.864 9 C 0.326 3.674 10 O -0.417 6.417 11 N -0.359 5.359 12 C 0.016 3.984 13 H 0.103 0.897 14 C 0.048 3.952 15 N -0.333 5.333 16 C -0.358 4.358 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.014 3.986 25 C -0.133 4.133 26 H 0.095 0.905 27 C -0.195 4.195 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.229 0.771 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.900 0.610 -2.448 18.077 hybrid contribution 0.798 0.479 0.731 1.184 sum -17.103 1.089 -1.717 17.223 Atomic orbital electron populations 1.21781 0.96032 1.01524 1.01657 1.21508 0.95448 0.96664 1.02448 1.21227 0.92201 0.97197 1.01955 1.22439 0.94288 0.95729 1.01531 0.86458 1.23101 1.03208 1.02051 0.90173 1.22304 0.97976 0.98320 1.02305 0.86373 1.19550 0.84423 0.83456 0.79947 1.90694 1.68708 1.33725 1.48539 1.45847 1.24311 1.10382 1.55370 1.22473 0.84266 0.96389 0.95263 0.89700 1.21463 0.83684 0.94511 0.95529 1.44431 1.11362 1.40332 1.37204 1.19094 0.88188 1.16596 1.11909 0.90291 1.24840 0.98119 0.98497 0.99068 1.69995 1.32347 1.24393 1.29768 0.86049 0.83427 0.77285 0.79018 1.20511 1.21812 1.21748 1.21589 0.90285 0.94806 0.91907 1.22607 0.97814 0.95965 0.96961 0.90474 1.21697 0.99858 1.01161 0.96767 0.92832 0.92857 0.92820 0.91764 0.91762 0.91772 0.91584 0.88101 0.87954 0.77118 0.93206 0.93499 0.93827 0.93999 0.96066 0.93128 0.92801 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.05 5.89 -26.73 -0.16 -1.21 16 3 C -0.09 -0.81 5.50 -26.73 -0.15 -0.95 16 4 C -0.12 -1.45 5.25 -90.59 -0.48 -1.93 16 5 H 0.12 1.66 7.60 -51.92 -0.39 1.26 16 6 C -0.15 -1.79 9.88 -26.73 -0.26 -2.06 16 7 C -0.19 -2.42 5.91 -91.73 -0.54 -2.96 16 8 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 9 C 0.54 9.42 7.61 -10.98 -0.08 9.34 16 10 O -0.54 -11.76 15.98 5.56 0.09 -11.67 16 11 N -0.71 -11.80 5.13 -52.03 -0.27 -12.06 16 12 C 0.12 2.38 2.70 -66.10 -0.18 2.20 16 13 H 0.08 1.79 7.60 -51.93 -0.39 1.39 16 14 C 0.17 4.43 5.12 -3.06 -0.02 4.41 16 15 N -0.61 -15.86 3.39 -170.07 -0.58 -16.44 16 16 C -0.23 -6.53 10.28 -15.06 -0.15 -6.68 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -27.89 10.31 55.49 0.57 -27.32 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C 0.14 2.91 6.70 -2.53 -0.02 2.90 16 25 C -0.11 -1.93 3.25 -88.47 -0.29 -2.22 16 26 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 27 C -0.14 -1.85 9.31 37.15 0.35 -1.51 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 7.88 -51.93 -0.41 0.11 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.97 8.03 -51.93 -0.42 0.56 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.40 5.36 8.52 -40.82 -0.35 5.01 16 38 H 0.05 1.39 7.27 -51.93 -0.38 1.02 16 39 H 0.05 1.39 7.50 -51.93 -0.39 1.00 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -33.26 362.65 -9.62 -42.88 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.18 Total: 3.35 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.70 Total: -1.74 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.27 Total: -55.82 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.26 -9.62 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080407454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.912 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds