Wall clock time and date at job start Tue Mar 31 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46710 * 2 1 4 4 C 1.52996 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.09008 * 115.56055 * 29.29399 * 4 3 2 6 6 C 1.53000 * 117.49997 * 243.60886 * 4 3 2 7 7 C 1.53002 * 60.02940 * 252.49592 * 6 4 3 8 8 H 1.09000 * 117.49996 * 107.50493 * 7 6 4 9 9 C 1.50706 * 117.49668 * 252.51929 * 7 6 4 10 10 O 1.21277 * 120.00023 * 68.61167 * 9 7 6 11 11 N 1.34780 * 119.99945 * 248.60941 * 9 7 6 12 12 C 1.46496 * 119.99685 * 180.02562 * 11 9 7 13 13 H 1.08999 * 110.64558 * 36.69155 * 12 11 9 14 14 C 1.54325 * 110.72169 * 273.54733 * 12 11 9 15 15 N 1.47023 * 107.27034 * 219.44780 * 14 12 11 16 16 C 1.36938 * 125.64917 * 178.97566 * 15 14 12 17 17 H 1.07994 * 120.00627 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99719 * 359.97303 * 16 15 14 19 19 N 1.31618 * 120.00028 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99893 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46991 * 119.99998 * 20 18 16 23 23 H 1.48502 * 109.47114 * 240.00093 * 20 18 16 24 24 C 1.47424 * 108.70565 * 358.93931 * 15 14 12 25 25 C 1.54910 * 104.83127 * 24.12761 * 24 15 14 26 26 H 1.08999 * 111.00158 * 81.06392 * 25 24 15 27 27 C 1.52995 * 111.00542 * 204.91784 * 25 24 15 28 28 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47253 * 299.99754 * 1 2 3 30 30 H 1.08997 * 109.46735 * 60.00582 * 1 2 3 31 31 H 1.08997 * 109.47665 * 239.99919 * 2 1 3 32 32 H 1.09000 * 109.47623 * 119.99342 * 2 1 3 33 33 H 1.08999 * 109.47637 * 59.99629 * 3 2 1 34 34 H 1.09004 * 109.47028 * 299.99914 * 3 2 1 35 35 H 1.09002 * 117.49833 * 359.97438 * 6 4 3 36 36 H 1.09002 * 117.49953 * 144.99738 * 6 4 3 37 37 H 0.96998 * 119.99800 * 0.02562 * 11 9 7 38 38 H 1.09004 * 109.88063 * 338.86128 * 14 12 11 39 39 H 1.08998 * 109.88688 * 99.87400 * 14 12 11 40 40 H 0.96997 * 119.99729 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.36837 * 142.96883 * 24 15 14 42 42 H 1.09002 * 110.36521 * 265.29136 * 24 15 14 43 43 H 1.08997 * 109.47338 * 172.19630 * 27 25 24 44 44 H 1.08996 * 109.47193 * 292.19985 * 27 25 24 45 45 H 1.09005 * 109.47509 * 52.19574 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 4.0401 0.5852 -0.4821 6 6 4.2768 2.0458 1.2148 7 6 4.2769 2.7952 -0.1191 8 1 3.6521 3.6850 -0.1966 9 6 5.5696 2.8391 -0.8925 10 8 6.0118 1.8266 -1.3926 11 7 6.2344 4.0037 -1.0283 12 6 7.4908 4.0465 -1.7805 13 1 7.4493 3.3729 -2.6364 14 6 8.6856 3.6972 -0.8682 15 7 9.7944 4.5877 -1.2412 16 6 11.0312 4.6113 -0.6539 17 1 11.7813 5.3059 -1.0022 18 6 11.3208 3.7425 0.3893 19 7 10.4066 2.8963 0.8141 20 14 13.0082 3.7741 1.1900 21 1 13.8480 4.8086 0.5342 22 1 12.8654 4.0949 2.6329 23 1 13.6524 2.4446 1.0398 24 6 9.3546 5.4504 -2.3528 25 6 7.8108 5.4958 -2.2327 26 1 7.4987 6.2182 -1.4785 27 6 7.1643 5.8038 -3.5847 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8935 -0.5138 -0.8899 32 1 1.8935 -0.5137 0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.6519 2.4429 2.0148 36 1 5.2119 1.5850 1.5332 37 1 5.8810 4.8134 -0.6279 38 1 8.4150 3.8591 0.1752 39 1 8.9755 2.6574 -1.0188 40 1 10.6089 2.2895 1.5433 41 1 9.7730 6.4511 -2.2449 42 1 9.6481 5.0166 -3.3087 43 1 6.0829 5.6936 -3.5039 44 1 7.4045 6.8257 -3.8779 45 1 7.5449 5.1114 -4.3356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080407454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:40 Heat of formation + Delta-G solvation = -30.151683 kcal Electronic energy + Delta-G solvation = -22215.105749 eV Core-core repulsion = 19039.275637 eV Total energy + Delta-G solvation = -3175.830112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19850 -39.51315 -37.96324 -35.62707 -34.71632 -34.22941 -32.18953 -29.81747 -28.30278 -27.40530 -25.85087 -24.46690 -22.84169 -22.14171 -21.57334 -21.37528 -20.60166 -18.91447 -18.23989 -17.42016 -16.92619 -16.15941 -15.93068 -15.71429 -15.67391 -15.18396 -14.80443 -14.49273 -14.18469 -14.07514 -13.76184 -13.70260 -13.35203 -13.12280 -13.05491 -12.92175 -12.89568 -12.63331 -12.20498 -12.16215 -12.05183 -11.91798 -11.88237 -11.66362 -11.65619 -11.48136 -11.15729 -10.98448 -10.79218 -10.72227 -10.00348 -8.95640 -7.86888 -5.25418 1.42384 1.44609 1.53062 1.55077 2.14338 2.47511 2.89266 3.31216 3.51126 3.66681 3.74530 3.79982 3.88644 4.04410 4.09565 4.18730 4.22632 4.31388 4.40979 4.48966 4.59899 4.66481 4.71312 4.84409 4.86522 4.90751 4.96276 5.01603 5.05141 5.06720 5.09348 5.21536 5.24197 5.28639 5.39201 5.42679 5.43286 5.48229 5.54287 5.60918 5.77342 6.13912 6.62737 7.03754 7.32829 7.73046 8.37039 9.22357 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.003812 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.681918 B = 7344.160070 C = 8481.170521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.117 4.117 5 H 0.085 0.915 6 C -0.145 4.145 7 C -0.186 4.186 8 H 0.160 0.840 9 C 0.531 3.469 10 O -0.593 6.593 11 N -0.698 5.698 12 C 0.135 3.865 13 H 0.068 0.932 14 C 0.190 3.810 15 N -0.629 5.629 16 C -0.241 4.241 17 H 0.090 0.910 18 C -0.073 4.073 19 N -0.953 5.953 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.290 1.290 23 H -0.296 1.296 24 C 0.131 3.869 25 C -0.092 4.092 26 H 0.094 0.906 27 C -0.129 4.129 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.016 0.984 39 H -0.015 1.015 40 H 0.243 0.757 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.307 4.065 -2.451 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.117 4.117 4 C -0.136 4.136 5 H 0.104 0.896 6 C -0.182 4.182 7 C -0.206 4.206 8 H 0.178 0.822 9 C 0.319 3.681 10 O -0.474 6.474 11 N -0.348 5.348 12 C 0.029 3.971 13 H 0.086 0.914 14 C 0.063 3.937 15 N -0.355 5.355 16 C -0.370 4.370 17 H 0.108 0.892 18 C -0.265 4.265 19 N -0.602 5.602 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.217 1.217 23 H -0.224 1.224 24 C 0.006 3.994 25 C -0.112 4.112 26 H 0.112 0.888 27 C -0.186 4.186 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.034 0.966 39 H 0.004 0.996 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.869 3.291 -2.676 20.317 hybrid contribution 1.460 -0.376 0.756 1.686 sum -18.409 2.914 -1.920 18.737 Atomic orbital electron populations 1.21752 0.94596 1.01997 1.02308 1.21519 0.96666 0.96394 1.01752 1.21220 0.89407 0.97691 1.03336 1.22456 0.96228 0.94140 1.00804 0.89627 1.23167 1.02473 1.01701 0.90891 1.22366 0.95964 1.00459 1.01862 0.82221 1.20474 0.85691 0.82589 0.79311 1.90673 1.70398 1.35561 1.50759 1.45697 1.22922 1.11297 1.54899 1.22038 0.83355 0.98198 0.93502 0.91367 1.21080 0.86043 0.91449 0.95089 1.44763 1.11025 1.41297 1.38449 1.19570 0.89480 1.16255 1.11677 0.89245 1.25780 1.02072 0.98497 1.00182 1.70266 1.34453 1.25329 1.30191 0.84950 0.78970 0.77240 0.77815 1.18367 1.21722 1.22364 1.21881 0.93076 0.94396 0.90049 1.22533 0.95123 0.93832 0.99705 0.88821 1.21653 1.00598 1.02510 0.93853 0.92551 0.91935 0.92383 0.92974 0.92151 0.89689 0.90707 0.84502 0.91178 0.74837 0.96560 0.99643 0.94732 0.92445 0.95763 0.91206 0.90179 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.13 -2.00 5.89 30.60 0.18 -1.82 16 3 C -0.08 -1.26 5.50 30.59 0.17 -1.09 16 4 C -0.12 -2.74 5.25 -10.77 -0.06 -2.80 16 5 H 0.09 2.57 7.60 -2.38 -0.02 2.55 16 6 C -0.14 -3.39 9.88 30.60 0.30 -3.09 16 7 C -0.19 -4.51 5.91 -11.51 -0.07 -4.58 16 8 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 9 C 0.53 18.83 7.61 87.66 0.67 19.50 16 10 O -0.59 -27.44 15.98 -3.02 -0.05 -27.49 16 11 N -0.70 -22.95 5.13 -436.91 -2.24 -25.19 16 12 C 0.14 5.41 2.70 46.18 0.12 5.53 16 13 H 0.07 2.98 7.60 -2.39 -0.02 2.96 16 14 C 0.19 10.21 5.12 86.73 0.44 10.66 16 15 N -0.63 -33.65 3.39 -691.98 -2.35 -36.00 16 16 C -0.24 -13.93 10.28 84.03 0.86 -13.07 16 17 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 18 C -0.07 -4.33 5.49 84.86 0.47 -3.86 16 19 N -0.95 -61.05 10.31 21.65 0.22 -60.83 16 20 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 C 0.13 5.30 6.70 86.86 0.58 5.88 16 25 C -0.09 -2.95 3.25 -9.40 -0.03 -2.98 16 26 H 0.09 2.73 8.00 -2.39 -0.02 2.72 16 27 C -0.13 -3.02 9.31 71.98 0.67 -2.35 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.04 7.88 -2.39 -0.02 1.02 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.14 2.22 8.03 -2.39 -0.02 2.20 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.41 10.36 8.52 -92.71 -0.79 9.57 16 38 H 0.02 0.97 7.27 -2.39 -0.02 0.95 16 39 H -0.01 -0.96 7.50 -2.39 -0.02 -0.97 16 40 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.02 0.98 7.98 -2.39 -0.02 0.96 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.05 1.25 8.07 -2.38 -0.02 1.23 16 Total: -1.00 -78.80 362.65 2.80 -76.01 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.16 Total: 19.26 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.03 Total: 4.81 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -4.37 Total: -122.03 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -78.80 2.80 -76.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080407454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.856 kcal (2) G-P(sol) polarization free energy of solvation -78.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds