Wall clock time and date at job start Tue Mar 31 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46922 * 2 1 4 4 C 1.52998 * 109.46769 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55488 * 29.27566 * 4 3 2 6 6 C 1.53006 * 117.49469 * 243.60847 * 4 3 2 7 7 C 1.52997 * 117.51857 * 174.98178 * 4 3 2 8 8 H 1.09002 * 117.49910 * 359.97438 * 7 4 3 9 9 C 1.50699 * 117.50247 * 214.97039 * 7 4 3 10 10 O 1.21287 * 119.99816 * 359.97438 * 9 7 4 11 11 N 1.34774 * 120.00330 * 179.97438 * 9 7 4 12 12 C 1.47022 * 125.64952 * 179.71285 * 11 9 7 13 13 C 1.54327 * 107.26558 * 178.84959 * 12 11 9 14 14 H 1.09006 * 110.51502 * 96.45349 * 13 12 11 15 15 C 1.53003 * 111.00308 * 219.59832 * 13 12 11 16 16 C 1.55153 * 103.02298 * 338.14547 * 13 12 11 17 17 H 1.09010 * 110.99953 * 277.22908 * 16 13 12 18 18 N 1.46494 * 111.03813 * 153.39876 * 16 13 12 19 19 C 1.36936 * 120.00320 * 161.33334 * 18 16 13 20 20 H 1.08003 * 119.99659 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00476 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99593 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00010 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46985 * 90.00356 * 23 21 19 25 25 H 1.48507 * 109.46819 * 210.00287 * 23 21 19 26 26 H 1.48501 * 109.47309 * 329.99908 * 23 21 19 27 27 C 1.47426 * 125.64660 * 0.02609 * 11 9 7 28 28 H 1.09002 * 109.46964 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46971 * 299.99859 * 1 2 3 30 30 H 1.09004 * 109.47241 * 59.99893 * 1 2 3 31 31 H 1.09002 * 109.46971 * 240.00141 * 2 1 3 32 32 H 1.08996 * 109.47528 * 119.99885 * 2 1 3 33 33 H 1.08995 * 109.47010 * 59.99906 * 3 2 1 34 34 H 1.08993 * 109.46891 * 299.99723 * 3 2 1 35 35 H 1.08990 * 117.50086 * 359.97396 * 6 4 3 36 36 H 1.09004 * 117.49623 * 145.00280 * 6 4 3 37 37 H 1.09001 * 109.88100 * 298.39903 * 12 11 9 38 38 H 1.09006 * 109.87769 * 59.56050 * 12 11 9 39 39 H 1.09002 * 109.47215 * 173.78209 * 15 13 12 40 40 H 1.08994 * 109.47584 * 293.78961 * 15 13 12 41 41 H 1.09003 * 109.46934 * 53.78593 * 15 13 12 42 42 H 0.97000 * 120.00006 * 341.32285 * 18 16 13 43 43 H 0.97007 * 119.99911 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.36677 * 322.92558 * 27 11 9 45 45 H 1.08992 * 110.36677 * 85.14252 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0400 0.5849 -0.4818 6 6 4.2769 2.0457 1.2149 7 6 4.2769 2.7942 -0.1194 8 1 3.6519 3.6839 -0.1976 9 6 5.5695 2.8380 -0.8929 10 8 6.0118 1.8251 -1.3924 11 7 6.2341 4.0025 -1.0295 12 6 7.5028 4.1857 -1.7494 13 6 7.8652 5.6834 -1.6650 14 1 8.5624 5.8622 -0.8463 15 6 8.4487 6.1819 -2.9886 16 6 6.4979 6.3584 -1.3788 17 1 5.9358 6.5086 -2.3006 18 7 6.6758 7.6245 -0.6636 19 6 5.6672 8.5506 -0.6494 20 1 4.7407 8.3477 -1.1659 21 6 5.8356 9.7500 0.0287 22 7 6.9650 9.9973 0.6577 23 14 4.4599 11.0135 0.0474 24 1 3.5752 10.7648 1.2137 25 1 5.0410 12.3765 0.1485 26 1 3.6701 10.9040 -1.2054 27 6 5.8125 5.3023 -0.4763 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.6520 2.4428 2.0148 36 1 5.2120 1.5847 1.5333 37 1 8.2841 3.5862 -1.2822 38 1 7.3825 3.8935 -2.7927 39 1 8.5925 7.2613 -2.9387 40 1 9.4072 5.6956 -3.1693 41 1 7.7618 5.9441 -3.8009 42 1 7.5081 7.8067 -0.1999 43 1 7.0826 10.8354 1.1320 44 1 4.7285 5.4037 -0.5297 45 1 6.1520 5.4040 0.5544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082727062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:19 Heat of formation + Delta-G solvation = -19.962361 kcal Electronic energy + Delta-G solvation = -22051.284365 eV Core-core repulsion = 18875.896096 eV Total energy + Delta-G solvation = -3175.388270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.07107 -38.22734 -36.76034 -34.08347 -33.99097 -32.45648 -30.74303 -27.87772 -27.50348 -26.53234 -24.12899 -23.33426 -22.09689 -21.33202 -20.61059 -19.87550 -18.73997 -17.20181 -17.00414 -15.98702 -15.63080 -15.26562 -14.69644 -14.42096 -14.14296 -13.71980 -13.47125 -13.21113 -13.11853 -12.98267 -12.74081 -12.68625 -12.26323 -12.19322 -11.78004 -11.67637 -11.46685 -11.17820 -11.13010 -11.04509 -10.98997 -10.76110 -10.61989 -10.30090 -10.25454 -10.05391 -9.93583 -9.81159 -9.59345 -9.04100 -8.32886 -7.11674 -5.88259 -3.19063 2.67511 3.17343 3.36954 3.42963 3.44216 3.83468 4.40681 4.51321 4.68449 4.75098 4.86309 4.94751 5.00088 5.11195 5.13300 5.18912 5.25129 5.37366 5.52036 5.55615 5.62976 5.63424 5.66329 5.70114 5.76209 5.80504 5.85345 5.91620 5.94131 6.01411 6.05145 6.08421 6.20605 6.24324 6.28696 6.36245 6.45177 6.54629 6.61421 6.85982 7.60185 7.81233 8.28961 8.39933 9.41312 9.94976 10.30104 11.33672 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.004047 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.989233 B = 6917.019271 C = 8409.995724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.120 4.120 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.183 4.183 8 H 0.124 0.876 9 C 0.555 3.445 10 O -0.557 6.557 11 N -0.609 5.609 12 C 0.117 3.883 13 C -0.113 4.113 14 H 0.084 0.916 15 C -0.134 4.134 16 C 0.177 3.823 17 H 0.065 0.935 18 N -0.711 5.711 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.075 3.925 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -15.596 -1.491 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.128 4.128 4 C -0.138 4.138 5 H 0.134 0.866 6 C -0.185 4.185 7 C -0.204 4.204 8 H 0.141 0.859 9 C 0.344 3.656 10 O -0.437 6.437 11 N -0.342 5.342 12 C -0.006 4.006 13 C -0.133 4.133 14 H 0.102 0.898 15 C -0.192 4.192 16 C 0.064 3.936 17 H 0.083 0.917 18 N -0.351 5.351 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.051 4.051 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.961 -16.031 -1.774 17.195 hybrid contribution -0.438 0.995 0.350 1.142 sum -6.399 -15.036 -1.425 16.403 Atomic orbital electron populations 1.21786 0.95939 1.01503 1.01847 1.21498 0.95578 0.96594 1.02228 1.21246 0.92027 0.97218 1.02325 1.22429 0.94550 0.95595 1.01246 0.86622 1.23069 1.02927 1.02051 0.90440 1.22264 0.97681 0.98598 1.01886 0.85851 1.19301 0.84496 0.81817 0.79974 1.90647 1.69246 1.33623 1.50145 1.48443 1.23688 1.08712 1.53315 1.21968 0.85436 0.96566 0.96640 1.22473 0.98851 0.92720 0.99265 0.89793 1.21663 0.99763 1.02141 0.95600 1.21362 0.92403 0.85881 0.93906 0.91738 1.42289 1.18025 1.13411 1.61326 1.19227 0.95068 0.95857 1.27738 0.91009 1.24760 0.97292 0.98176 1.00211 1.69658 1.24470 1.25352 1.38160 0.86194 0.81200 0.81056 0.77739 1.21601 1.21706 1.20651 1.23507 1.00390 0.81778 0.99454 0.92851 0.92760 0.92723 0.91876 0.91870 0.91558 0.91387 0.87843 0.88499 0.92059 0.91691 0.91303 0.93178 0.92893 0.77843 0.93327 0.91299 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.01 5.89 -26.73 -0.16 -1.17 16 3 C -0.09 -0.86 5.50 -26.73 -0.15 -1.00 16 4 C -0.12 -1.38 5.25 -90.62 -0.48 -1.86 16 5 H 0.12 1.49 7.60 -51.93 -0.39 1.10 16 6 C -0.15 -1.69 9.88 -26.73 -0.26 -1.95 16 7 C -0.18 -2.46 5.25 -91.77 -0.48 -2.95 16 8 H 0.12 1.58 7.07 -51.93 -0.37 1.21 16 9 C 0.56 9.24 7.63 -10.99 -0.08 9.16 16 10 O -0.56 -10.73 16.59 5.55 0.09 -10.64 16 11 N -0.61 -9.99 3.33 -170.52 -0.57 -10.56 16 12 C 0.12 1.80 6.48 -3.06 -0.02 1.78 16 13 C -0.11 -1.79 3.15 -88.78 -0.28 -2.07 16 14 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 15 C -0.13 -1.91 9.17 37.16 0.34 -1.57 16 16 C 0.18 3.28 3.13 -65.79 -0.21 3.08 16 17 H 0.06 1.24 8.04 -51.92 -0.42 0.82 16 18 N -0.71 -16.45 5.28 -51.35 -0.27 -16.72 16 19 C -0.25 -6.43 9.98 -15.06 -0.15 -6.59 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.74 13.06 55.49 0.72 -26.01 16 23 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.07 1.28 6.38 -2.53 -0.02 1.26 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.58 7.88 -51.93 -0.41 0.18 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.01 8.03 -51.93 -0.42 0.59 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.98 7.78 -51.93 -0.40 0.58 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 42 H 0.39 9.58 7.71 -40.82 -0.31 9.27 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.07 1.14 7.00 -51.93 -0.36 0.78 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -29.42 365.13 -9.33 -38.75 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.12 Total: 8.24 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.67 Total: -4.94 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.11 Total: -53.29 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.42 -9.33 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082727062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.787 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds