Wall clock time and date at job start Tue Mar 31 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46922 * 2 1 4 4 C 1.52998 * 109.46769 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55488 * 29.27566 * 4 3 2 6 6 C 1.53006 * 117.49469 * 243.60847 * 4 3 2 7 7 C 1.52997 * 117.51857 * 174.98178 * 4 3 2 8 8 H 1.09002 * 117.49910 * 359.97438 * 7 4 3 9 9 C 1.50699 * 117.50247 * 214.97039 * 7 4 3 10 10 O 1.21287 * 119.99816 * 359.97438 * 9 7 4 11 11 N 1.34774 * 120.00330 * 179.97438 * 9 7 4 12 12 C 1.47022 * 125.64952 * 179.71285 * 11 9 7 13 13 C 1.54327 * 107.26558 * 178.84959 * 12 11 9 14 14 H 1.09006 * 110.51502 * 96.45349 * 13 12 11 15 15 C 1.53003 * 111.00308 * 219.59832 * 13 12 11 16 16 C 1.55153 * 103.02298 * 338.14547 * 13 12 11 17 17 H 1.09010 * 110.99953 * 277.22908 * 16 13 12 18 18 N 1.46494 * 111.03813 * 153.39876 * 16 13 12 19 19 C 1.36936 * 120.00320 * 161.33334 * 18 16 13 20 20 H 1.08003 * 119.99659 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00476 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99593 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00010 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46985 * 90.00356 * 23 21 19 25 25 H 1.48507 * 109.46819 * 210.00287 * 23 21 19 26 26 H 1.48501 * 109.47309 * 329.99908 * 23 21 19 27 27 C 1.47426 * 125.64660 * 0.02609 * 11 9 7 28 28 H 1.09002 * 109.46964 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46971 * 299.99859 * 1 2 3 30 30 H 1.09004 * 109.47241 * 59.99893 * 1 2 3 31 31 H 1.09002 * 109.46971 * 240.00141 * 2 1 3 32 32 H 1.08996 * 109.47528 * 119.99885 * 2 1 3 33 33 H 1.08995 * 109.47010 * 59.99906 * 3 2 1 34 34 H 1.08993 * 109.46891 * 299.99723 * 3 2 1 35 35 H 1.08990 * 117.50086 * 359.97396 * 6 4 3 36 36 H 1.09004 * 117.49623 * 145.00280 * 6 4 3 37 37 H 1.09001 * 109.88100 * 298.39903 * 12 11 9 38 38 H 1.09006 * 109.87769 * 59.56050 * 12 11 9 39 39 H 1.09002 * 109.47215 * 173.78209 * 15 13 12 40 40 H 1.08994 * 109.47584 * 293.78961 * 15 13 12 41 41 H 1.09003 * 109.46934 * 53.78593 * 15 13 12 42 42 H 0.97000 * 120.00006 * 341.32285 * 18 16 13 43 43 H 0.97007 * 119.99911 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.36677 * 322.92558 * 27 11 9 45 45 H 1.08992 * 110.36677 * 85.14252 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0400 0.5849 -0.4818 6 6 4.2769 2.0457 1.2149 7 6 4.2769 2.7942 -0.1194 8 1 3.6519 3.6839 -0.1976 9 6 5.5695 2.8380 -0.8929 10 8 6.0118 1.8251 -1.3924 11 7 6.2341 4.0025 -1.0295 12 6 7.5028 4.1857 -1.7494 13 6 7.8652 5.6834 -1.6650 14 1 8.5624 5.8622 -0.8463 15 6 8.4487 6.1819 -2.9886 16 6 6.4979 6.3584 -1.3788 17 1 5.9358 6.5086 -2.3006 18 7 6.6758 7.6245 -0.6636 19 6 5.6672 8.5506 -0.6494 20 1 4.7407 8.3477 -1.1659 21 6 5.8356 9.7500 0.0287 22 7 6.9650 9.9973 0.6577 23 14 4.4599 11.0135 0.0474 24 1 3.5752 10.7648 1.2137 25 1 5.0410 12.3765 0.1485 26 1 3.6701 10.9040 -1.2054 27 6 5.8125 5.3023 -0.4763 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.6520 2.4428 2.0148 36 1 5.2120 1.5847 1.5333 37 1 8.2841 3.5862 -1.2822 38 1 7.3825 3.8935 -2.7927 39 1 8.5925 7.2613 -2.9387 40 1 9.4072 5.6956 -3.1693 41 1 7.7618 5.9441 -3.8009 42 1 7.5081 7.8067 -0.1999 43 1 7.0826 10.8354 1.1320 44 1 4.7285 5.4037 -0.5297 45 1 6.1520 5.4040 0.5544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082727062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:18 Heat of formation + Delta-G solvation = -35.674246 kcal Electronic energy + Delta-G solvation = -22051.965684 eV Core-core repulsion = 18875.896096 eV Total energy + Delta-G solvation = -3176.069588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35698 -39.47563 -37.92201 -35.85992 -34.75649 -33.89421 -32.50584 -29.14906 -28.71492 -27.60979 -25.91021 -24.57253 -22.96096 -22.62809 -21.52274 -21.26314 -19.98845 -19.09839 -18.25115 -17.40032 -16.94690 -16.29796 -16.02502 -15.61860 -15.36583 -15.33914 -14.72375 -14.52102 -14.45577 -14.13613 -14.06884 -13.72498 -13.25931 -13.15262 -13.06117 -12.93988 -12.87380 -12.81527 -12.23168 -12.18447 -12.16012 -12.00682 -11.94687 -11.72970 -11.65873 -11.39809 -11.21752 -11.08300 -10.91162 -10.79249 -9.71384 -9.04006 -7.93544 -5.23358 1.42043 1.51529 1.51825 1.60048 1.90861 2.57560 2.82559 3.30283 3.38357 3.65361 3.74891 3.77916 3.82835 3.94463 4.11278 4.15974 4.19647 4.29267 4.35002 4.38262 4.46335 4.56839 4.62644 4.65375 4.81112 4.82508 4.87389 4.89570 4.94416 4.97383 5.05586 5.08102 5.11229 5.20198 5.22217 5.33392 5.36392 5.41118 5.44357 5.52060 5.56117 6.27122 6.47389 7.07888 7.35214 8.05898 8.30771 9.29250 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.004047 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.989233 B = 6917.019271 C = 8409.995724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.110 4.110 5 H 0.100 0.900 6 C -0.136 4.136 7 C -0.201 4.201 8 H 0.132 0.868 9 C 0.551 3.449 10 O -0.587 6.587 11 N -0.610 5.610 12 C 0.118 3.882 13 C -0.103 4.103 14 H 0.079 0.921 15 C -0.129 4.129 16 C 0.171 3.829 17 H 0.062 0.938 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.079 0.921 21 C -0.068 4.068 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.299 1.299 26 H -0.269 1.269 27 C 0.089 3.911 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 -16.453 -1.628 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.124 4.124 4 C -0.128 4.128 5 H 0.118 0.882 6 C -0.173 4.173 7 C -0.221 4.221 8 H 0.150 0.850 9 C 0.342 3.658 10 O -0.469 6.469 11 N -0.342 5.342 12 C -0.005 4.005 13 C -0.122 4.122 14 H 0.097 0.903 15 C -0.186 4.186 16 C 0.061 3.939 17 H 0.080 0.920 18 N -0.359 5.359 19 C -0.373 4.373 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.616 5.616 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.226 1.226 26 H -0.194 1.194 27 C -0.037 4.037 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.374 -16.926 -1.939 18.564 hybrid contribution 0.028 1.157 0.343 1.208 sum -7.347 -15.769 -1.596 17.469 Atomic orbital electron populations 1.21774 0.95035 1.02080 1.02048 1.21487 0.96336 0.95809 1.02175 1.21254 0.90252 0.98086 1.02795 1.22451 0.95793 0.93815 1.00780 0.88166 1.23180 1.02981 1.00877 0.90298 1.22298 0.96591 1.00012 1.03241 0.85049 1.19849 0.85208 0.81173 0.79612 1.90628 1.70290 1.34455 1.51482 1.48486 1.23967 1.08481 1.53268 1.22002 0.85350 0.96100 0.97039 1.22384 0.97206 0.92615 1.00033 0.90267 1.21620 1.01143 1.01027 0.94841 1.21493 0.94369 0.84674 0.93408 0.92025 1.42376 1.17078 1.14690 1.61723 1.19589 0.95558 0.96021 1.26126 0.90328 1.25489 0.99373 1.00272 1.00952 1.69804 1.26399 1.25602 1.39808 0.85223 0.78731 0.78282 0.78005 1.21419 1.22618 1.19435 1.23168 1.00506 0.81633 0.98356 0.92144 0.92290 0.92789 0.92417 0.91519 0.90413 0.91542 0.85611 0.89114 0.91489 0.91033 0.93140 0.90809 0.92115 0.79049 0.94024 0.90607 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.80 5.89 30.60 0.18 -1.62 16 3 C -0.09 -1.46 5.50 30.60 0.17 -1.29 16 4 C -0.11 -2.38 5.25 -10.79 -0.06 -2.44 16 5 H 0.10 2.52 7.60 -2.39 -0.02 2.51 16 6 C -0.14 -2.87 9.88 30.60 0.30 -2.57 16 7 C -0.20 -5.11 5.25 -11.54 -0.06 -5.17 16 8 H 0.13 3.12 7.07 -2.39 -0.02 3.11 16 9 C 0.55 17.86 7.63 87.66 0.67 18.53 16 10 O -0.59 -22.32 16.59 -3.05 -0.05 -22.37 16 11 N -0.61 -19.38 3.33 -811.79 -2.70 -22.08 16 12 C 0.12 3.48 6.48 86.73 0.56 4.04 16 13 C -0.10 -3.14 3.15 -9.60 -0.03 -3.17 16 14 H 0.08 2.52 8.00 -2.38 -0.02 2.50 16 15 C -0.13 -3.49 9.17 71.98 0.66 -2.83 16 16 C 0.17 6.23 3.13 46.38 0.15 6.38 16 17 H 0.06 2.30 8.04 -2.38 -0.02 2.28 16 18 N -0.72 -33.27 5.28 -316.38 -1.67 -34.94 16 19 C -0.24 -12.41 9.98 84.03 0.84 -11.57 16 20 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 21 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 22 N -0.97 -56.33 13.06 21.65 0.28 -56.04 16 23 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 24 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 C 0.09 2.97 6.38 86.85 0.55 3.52 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.15 7.88 -2.39 -0.02 1.13 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 2.10 8.03 -2.39 -0.02 2.08 16 36 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 2.04 7.78 -2.38 -0.02 2.02 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.38 18.90 7.71 -92.71 -0.72 18.18 16 43 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 44 H 0.08 2.41 7.00 -2.39 -0.02 2.40 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -62.19 365.13 3.24 -58.96 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.23 Total: 33.19 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.11 Total: -2.63 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.09 Total: -113.07 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -62.19 3.24 -58.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082727062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.281 kcal (2) G-P(sol) polarization free energy of solvation -62.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds