Wall clock time and date at job start Tue Mar 31 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 H 1.09004 * 109.47033 * 304.99784 * 3 2 1 5 5 C 1.53002 * 109.47197 * 64.99249 * 3 2 1 6 6 C 1.50705 * 109.47449 * 184.99942 * 3 2 1 7 7 O 1.21274 * 119.99340 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00023 * 180.02562 * 6 3 2 9 9 C 1.44756 * 117.18370 * 359.97438 * 8 6 3 10 10 C 1.51490 * 111.70457 * 213.73445 * 9 8 6 11 11 C 1.49439 * 114.09273 * 317.18626 * 10 9 8 12 12 H 1.08997 * 107.67846 * 165.90817 * 11 10 9 13 13 C 1.54527 * 112.97105 * 284.23054 * 11 10 9 14 14 C 1.55245 * 100.54189 * 165.81535 * 13 11 10 15 15 N 1.47464 * 105.14999 * 323.75710 * 14 13 11 16 16 C 1.36937 * 125.66485 * 200.99947 * 15 14 13 17 17 H 1.08004 * 119.99942 * 169.79412 * 16 15 14 18 18 C 1.38813 * 119.99957 * 349.79763 * 16 15 14 19 19 N 1.31616 * 119.99916 * 350.23772 * 18 16 15 20 20 Si 1.86804 * 119.99841 * 170.24107 * 18 16 15 21 21 H 1.48490 * 109.47014 * 94.52981 * 20 18 16 22 22 H 1.48505 * 109.46747 * 214.53236 * 20 18 16 23 23 H 1.48503 * 109.46899 * 334.52735 * 20 18 16 24 24 C 1.48530 * 108.53449 * 20.97302 * 15 14 13 25 25 H 1.09000 * 108.75887 * 121.12735 * 24 15 14 26 26 C 1.43779 * 117.18432 * 180.02562 * 8 6 3 27 27 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47404 * 300.00316 * 1 2 3 29 29 H 1.09008 * 109.46794 * 60.00519 * 1 2 3 30 30 H 1.09001 * 109.47624 * 240.00074 * 2 1 3 31 31 H 1.08996 * 109.47002 * 119.99849 * 2 1 3 32 32 H 1.08999 * 109.46466 * 60.00742 * 5 3 2 33 33 H 1.09000 * 109.47047 * 180.02562 * 5 3 2 34 34 H 1.08991 * 109.47402 * 300.00604 * 5 3 2 35 35 H 1.08997 * 109.02949 * 93.17018 * 9 8 6 36 36 H 1.08997 * 108.97948 * 334.26971 * 9 8 6 37 37 H 1.08997 * 108.56056 * 195.98535 * 10 9 8 38 38 H 1.09008 * 108.43970 * 78.28939 * 10 9 8 39 39 H 1.09003 * 111.19954 * 47.99070 * 13 11 10 40 40 H 1.08999 * 111.23831 * 283.65615 * 13 11 10 41 41 H 1.09002 * 110.32350 * 82.70088 * 14 13 11 42 42 H 1.08994 * 110.32434 * 204.80236 * 14 13 11 43 43 H 0.96999 * 119.99782 * 180.02562 * 19 18 16 44 44 H 1.09000 * 108.05509 * 279.09670 * 26 8 6 45 45 H 1.09001 * 108.05636 * 35.61844 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5420 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2037 8 7 4.2150 2.6118 -0.1448 9 6 3.4345 3.8269 -0.0450 10 6 4.0497 4.9553 -0.8469 11 6 5.5345 5.0592 -0.7141 12 1 5.8925 5.7171 -1.5060 13 6 5.9779 5.6758 0.6317 14 6 7.4865 5.3094 0.6286 15 7 7.5583 3.9773 0.0004 16 6 8.5884 3.0852 0.1357 17 1 8.4780 2.0738 -0.2268 18 6 9.7744 3.4807 0.7390 19 7 9.9845 4.7521 1.0065 20 14 11.0721 2.2084 1.1710 21 1 12.0639 2.1193 0.0694 22 1 11.7596 2.6087 2.4249 23 1 10.4243 0.8858 1.3621 24 6 6.3264 3.7668 -0.8022 25 1 6.6100 3.5879 -1.8394 26 6 5.6460 2.5430 -0.2654 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0698 1.5876 2.1491 33 1 1.9981 3.1544 1.3071 34 1 0.5489 2.1252 1.3968 35 1 3.3748 4.1260 1.0014 36 1 2.4285 3.6336 -0.4173 37 1 3.6054 5.8955 -0.5202 38 1 3.8052 4.8042 -1.8984 39 1 5.4603 5.2080 1.4692 40 1 5.8346 6.7563 0.6372 41 1 8.0511 6.0350 0.0431 42 1 7.8681 5.2681 1.6488 43 1 10.8134 5.0285 1.4277 44 1 6.0585 2.3329 0.7214 45 1 5.8902 1.7037 -0.9166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084892335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:21 Heat of formation + Delta-G solvation = -10.539566 kcal Electronic energy + Delta-G solvation = -23549.218395 eV Core-core repulsion = 20374.238729 eV Total energy + Delta-G solvation = -3174.979666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61627 -38.45052 -35.59866 -35.35306 -33.12652 -31.63106 -30.33313 -29.02303 -28.29412 -25.72621 -24.62297 -23.92207 -22.64925 -21.46051 -20.37682 -19.20572 -17.54909 -17.09109 -16.91762 -15.79219 -15.47786 -14.88715 -14.81255 -14.63793 -14.15513 -13.92989 -13.72592 -13.47812 -13.00776 -12.60315 -12.41961 -12.38874 -12.10892 -11.84280 -11.65142 -11.57586 -11.50677 -11.26341 -11.04646 -10.82738 -10.76884 -10.74362 -10.65792 -10.07657 -9.95173 -9.85540 -9.69030 -9.59543 -9.37012 -8.58301 -8.14568 -6.84892 -5.74190 -3.07209 2.88049 3.34148 3.42011 3.48020 3.51430 4.48619 4.53777 4.68205 4.81558 4.92223 4.98099 5.08202 5.20661 5.25098 5.35990 5.36995 5.41295 5.50399 5.55120 5.63371 5.69464 5.77595 5.79734 5.87237 5.92433 5.98490 5.99330 6.06714 6.17159 6.20236 6.22982 6.28196 6.46996 6.56671 6.64132 6.81884 7.01615 7.13310 7.49825 7.59775 7.68394 7.80102 8.23194 8.49148 9.19293 9.79740 10.46914 11.38752 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.005029 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.017416 B = 5566.865015 C = 6486.512113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.109 4.109 4 H 0.094 0.906 5 C -0.161 4.161 6 C 0.501 3.499 7 O -0.542 6.542 8 N -0.589 5.589 9 C 0.111 3.889 10 C -0.115 4.115 11 C -0.090 4.090 12 H 0.066 0.934 13 C -0.141 4.141 14 C 0.174 3.826 15 N -0.597 5.597 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.161 3.839 25 H 0.038 0.962 26 C 0.108 3.892 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.060 0.940 43 H 0.252 0.748 44 H 0.070 0.930 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.480 0.062 -1.682 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.112 0.888 5 C -0.218 4.218 6 C 0.288 3.712 7 O -0.420 6.420 8 N -0.321 5.321 9 C -0.012 4.012 10 C -0.153 4.153 11 C -0.109 4.109 12 H 0.085 0.915 13 C -0.180 4.180 14 C 0.050 3.950 15 N -0.322 5.322 16 C -0.358 4.358 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.053 3.947 25 H 0.056 0.944 26 C -0.016 4.016 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.845 -0.437 -1.641 18.921 hybrid contribution 0.886 -0.495 0.156 1.026 sum -17.959 -0.932 -1.485 18.045 Atomic orbital electron populations 1.21841 0.95715 1.01682 1.01717 1.21327 0.95023 0.94472 1.03475 1.21323 0.92498 0.99016 1.00244 0.88832 1.22165 1.01954 1.01665 0.96037 1.20795 0.89864 0.83790 0.76719 1.90677 1.70324 1.31327 1.49625 1.46818 1.07634 1.05763 1.71865 1.21122 0.94500 0.85375 1.00236 1.20679 0.96087 0.98226 1.00307 1.20586 0.93396 0.97512 0.99453 0.91522 1.23026 1.00381 0.98731 0.95833 1.21402 0.88724 0.86392 0.98514 1.45036 1.16815 1.16464 1.53921 1.19018 0.91083 0.91470 1.34196 0.90551 1.24794 0.97247 0.96120 1.01944 1.69968 1.25576 1.13376 1.47517 0.86157 0.81556 0.80732 0.77720 1.21593 1.21626 1.20459 1.20087 0.88305 0.91367 0.94921 0.94413 1.21104 0.77417 1.00105 1.02973 0.92651 0.92484 0.92840 0.91243 0.91376 0.92125 0.90764 0.91498 0.91978 0.90210 0.90609 0.92096 0.92372 0.92070 0.95128 0.92137 0.93759 0.91195 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.11 -1.16 4.75 -26.73 -0.13 -1.29 16 3 C -0.11 -1.23 1.88 -91.77 -0.17 -1.40 16 4 H 0.09 0.88 7.23 -51.93 -0.38 0.50 16 5 C -0.16 -1.51 8.49 37.16 0.32 -1.20 16 6 C 0.50 8.09 6.97 -10.98 -0.08 8.01 16 7 O -0.54 -11.03 15.25 5.56 0.08 -10.95 16 8 N -0.59 -9.47 3.12 -179.94 -0.56 -10.04 16 9 C 0.11 1.34 4.52 -5.74 -0.03 1.31 16 10 C -0.11 -1.41 5.44 -29.25 -0.16 -1.56 16 11 C -0.09 -1.50 2.47 -92.17 -0.23 -1.72 16 12 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 13 C -0.14 -2.51 6.54 -24.74 -0.16 -2.67 16 14 C 0.17 4.14 5.37 -2.33 -0.01 4.13 16 15 N -0.60 -15.05 2.94 -164.34 -0.48 -15.53 16 16 C -0.23 -6.43 9.55 -15.06 -0.14 -6.57 16 17 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 18 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 19 N -0.92 -26.96 10.71 55.49 0.59 -26.37 16 20 Si 0.91 22.51 29.57 -169.99 -5.03 17.49 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.16 3.31 3.38 -68.92 -0.23 3.08 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 C 0.11 2.18 5.31 -7.00 -0.04 2.14 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 29 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 0.86 7.96 -51.93 -0.41 0.44 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.66 4.38 -51.93 -0.23 0.43 16 34 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 35 H 0.06 0.72 6.93 -51.93 -0.36 0.36 16 36 H 0.08 0.73 5.24 -51.93 -0.27 0.46 16 37 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.79 7.95 -51.93 -0.41 0.38 16 42 H 0.06 1.61 7.15 -51.93 -0.37 1.23 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.07 1.63 7.46 -51.93 -0.39 1.25 16 45 H 0.07 1.43 7.26 -51.93 -0.38 1.05 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -32.06 334.79 -8.79 -40.85 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.65 Total: -1.67 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.80 Total: 1.17 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.45 Total: -51.94 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.06 -8.79 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084892335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.314 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds