Wall clock time and date at job start Tue Mar 31 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 H 1.09004 * 109.47033 * 304.99784 * 3 2 1 5 5 C 1.53002 * 109.47197 * 64.99249 * 3 2 1 6 6 C 1.50705 * 109.47449 * 184.99942 * 3 2 1 7 7 O 1.21274 * 119.99340 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00023 * 180.02562 * 6 3 2 9 9 C 1.44756 * 117.18370 * 359.97438 * 8 6 3 10 10 C 1.51490 * 111.70457 * 213.73445 * 9 8 6 11 11 C 1.49439 * 114.09273 * 317.18626 * 10 9 8 12 12 H 1.08997 * 107.67846 * 165.90817 * 11 10 9 13 13 C 1.54527 * 112.97105 * 284.23054 * 11 10 9 14 14 C 1.55245 * 100.54189 * 165.81535 * 13 11 10 15 15 N 1.47464 * 105.14999 * 323.75710 * 14 13 11 16 16 C 1.36937 * 125.66485 * 200.99947 * 15 14 13 17 17 H 1.08004 * 119.99942 * 169.79412 * 16 15 14 18 18 C 1.38813 * 119.99957 * 349.79763 * 16 15 14 19 19 N 1.31616 * 119.99916 * 350.23772 * 18 16 15 20 20 Si 1.86804 * 119.99841 * 170.24107 * 18 16 15 21 21 H 1.48490 * 109.47014 * 94.52981 * 20 18 16 22 22 H 1.48505 * 109.46747 * 214.53236 * 20 18 16 23 23 H 1.48503 * 109.46899 * 334.52735 * 20 18 16 24 24 C 1.48530 * 108.53449 * 20.97302 * 15 14 13 25 25 H 1.09000 * 108.75887 * 121.12735 * 24 15 14 26 26 C 1.43779 * 117.18432 * 180.02562 * 8 6 3 27 27 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47404 * 300.00316 * 1 2 3 29 29 H 1.09008 * 109.46794 * 60.00519 * 1 2 3 30 30 H 1.09001 * 109.47624 * 240.00074 * 2 1 3 31 31 H 1.08996 * 109.47002 * 119.99849 * 2 1 3 32 32 H 1.08999 * 109.46466 * 60.00742 * 5 3 2 33 33 H 1.09000 * 109.47047 * 180.02562 * 5 3 2 34 34 H 1.08991 * 109.47402 * 300.00604 * 5 3 2 35 35 H 1.08997 * 109.02949 * 93.17018 * 9 8 6 36 36 H 1.08997 * 108.97948 * 334.26971 * 9 8 6 37 37 H 1.08997 * 108.56056 * 195.98535 * 10 9 8 38 38 H 1.09008 * 108.43970 * 78.28939 * 10 9 8 39 39 H 1.09003 * 111.19954 * 47.99070 * 13 11 10 40 40 H 1.08999 * 111.23831 * 283.65615 * 13 11 10 41 41 H 1.09002 * 110.32350 * 82.70088 * 14 13 11 42 42 H 1.08994 * 110.32434 * 204.80236 * 14 13 11 43 43 H 0.96999 * 119.99782 * 180.02562 * 19 18 16 44 44 H 1.09000 * 108.05509 * 279.09670 * 26 8 6 45 45 H 1.09001 * 108.05636 * 35.61844 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5420 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2037 8 7 4.2150 2.6118 -0.1448 9 6 3.4345 3.8269 -0.0450 10 6 4.0497 4.9553 -0.8469 11 6 5.5345 5.0592 -0.7141 12 1 5.8925 5.7171 -1.5060 13 6 5.9779 5.6758 0.6317 14 6 7.4865 5.3094 0.6286 15 7 7.5583 3.9773 0.0004 16 6 8.5884 3.0852 0.1357 17 1 8.4780 2.0738 -0.2268 18 6 9.7744 3.4807 0.7390 19 7 9.9845 4.7521 1.0065 20 14 11.0721 2.2084 1.1710 21 1 12.0639 2.1193 0.0694 22 1 11.7596 2.6087 2.4249 23 1 10.4243 0.8858 1.3621 24 6 6.3264 3.7668 -0.8022 25 1 6.6100 3.5879 -1.8394 26 6 5.6460 2.5430 -0.2654 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0698 1.5876 2.1491 33 1 1.9981 3.1544 1.3071 34 1 0.5489 2.1252 1.3968 35 1 3.3748 4.1260 1.0014 36 1 2.4285 3.6336 -0.4173 37 1 3.6054 5.8955 -0.5202 38 1 3.8052 4.8042 -1.8984 39 1 5.4603 5.2080 1.4692 40 1 5.8346 6.7563 0.6372 41 1 8.0511 6.0350 0.0431 42 1 7.8681 5.2681 1.6488 43 1 10.8134 5.0285 1.4277 44 1 6.0585 2.3329 0.7214 45 1 5.8902 1.7037 -0.9166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084892335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:21 Heat of formation + Delta-G solvation = -30.899498 kcal Electronic energy + Delta-G solvation = -23550.101268 eV Core-core repulsion = 20374.238729 eV Total energy + Delta-G solvation = -3175.862539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91649 -39.92898 -36.97094 -36.45680 -34.84358 -33.30021 -31.58446 -30.45493 -29.76761 -26.83784 -26.36064 -25.18086 -24.01808 -22.52774 -22.19464 -20.38465 -18.97622 -18.78274 -18.28296 -17.13614 -16.96175 -16.50754 -16.37912 -15.72355 -15.68380 -15.33561 -15.00460 -14.43074 -14.27837 -14.14325 -13.76934 -13.57726 -13.35815 -13.29098 -13.09097 -12.77313 -12.68922 -12.59660 -12.52660 -12.49933 -12.11211 -12.02629 -11.74830 -11.62839 -11.56011 -11.42374 -11.27383 -11.16096 -10.76466 -10.60451 -9.52191 -8.94036 -7.93298 -5.27407 1.39638 1.40657 1.50976 1.62968 2.07938 2.44097 3.25017 3.48620 3.53642 3.72717 3.81942 3.88179 3.98815 4.04808 4.20963 4.24329 4.30325 4.43730 4.49745 4.56538 4.63964 4.64851 4.73003 4.81274 4.91210 4.94368 4.99721 5.00324 5.05698 5.09055 5.17709 5.19374 5.25109 5.34294 5.42466 5.44990 5.52183 5.54308 5.61527 5.73509 5.74854 6.15464 6.45190 7.04584 7.21664 7.69914 8.36214 9.18005 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.005029 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.017416 B = 5566.865015 C = 6486.512113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.098 4.098 4 H 0.128 0.872 5 C -0.158 4.158 6 C 0.491 3.509 7 O -0.597 6.597 8 N -0.590 5.590 9 C 0.100 3.900 10 C -0.111 4.111 11 C -0.080 4.080 12 H 0.069 0.931 13 C -0.121 4.121 14 C 0.176 3.824 15 N -0.618 5.618 16 C -0.242 4.242 17 H 0.066 0.934 18 C -0.056 4.056 19 N -0.943 5.943 20 Si 0.969 3.031 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.158 3.842 25 H 0.022 0.978 26 C 0.134 3.866 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.001 0.999 42 H 0.022 0.978 43 H 0.249 0.751 44 H 0.027 0.973 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.379 1.506 -1.926 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.119 4.119 4 H 0.146 0.854 5 C -0.215 4.215 6 C 0.281 3.719 7 O -0.479 6.479 8 N -0.321 5.321 9 C -0.021 4.021 10 C -0.149 4.149 11 C -0.099 4.099 12 H 0.087 0.913 13 C -0.159 4.159 14 C 0.051 3.949 15 N -0.344 5.344 16 C -0.371 4.371 17 H 0.084 0.916 18 C -0.250 4.250 19 N -0.591 5.591 20 Si 0.797 3.203 21 H -0.210 1.210 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.051 3.949 25 H 0.040 0.960 26 C 0.008 3.992 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.019 0.981 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -22.799 1.032 -1.894 22.900 hybrid contribution 2.120 -0.996 0.208 2.351 sum -20.679 0.036 -1.685 20.747 Atomic orbital electron populations 1.21794 0.92715 1.02443 1.03192 1.21327 0.97476 0.94165 1.01472 1.21402 0.87992 0.99775 1.02751 0.85433 1.22195 1.03918 1.01571 0.93784 1.21901 0.92144 0.82773 0.75074 1.90652 1.71904 1.33375 1.51920 1.46905 1.05839 1.07822 1.71496 1.21606 0.95669 0.83385 1.01490 1.20726 0.92177 1.00233 1.01732 1.20602 0.96360 0.94301 0.98616 0.91290 1.22886 0.95185 1.00995 0.96836 1.21255 0.92946 0.85231 0.95492 1.45308 1.17568 1.16554 1.54926 1.19222 0.92249 0.91802 1.33860 0.91618 1.25529 0.99208 0.97923 1.02349 1.70142 1.25835 1.14766 1.48316 0.85213 0.79119 0.78501 0.77425 1.20998 1.21322 1.20325 1.20275 0.87432 0.93970 0.93178 0.96010 1.20418 0.80530 0.98682 0.99539 0.92452 0.90958 0.91244 0.93370 0.93556 0.94101 0.89531 0.88287 0.90713 0.85920 0.86454 0.90422 0.91708 0.88572 0.98060 0.95979 0.94170 0.95436 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.67 71.98 0.70 -1.13 16 2 C -0.11 -2.20 4.75 30.59 0.15 -2.05 16 3 C -0.10 -1.91 1.88 -11.54 -0.02 -1.93 16 4 H 0.13 1.68 7.23 -2.39 -0.02 1.66 16 5 C -0.16 -2.30 8.49 71.98 0.61 -1.69 16 6 C 0.49 15.61 6.97 87.66 0.61 16.22 16 7 O -0.60 -25.48 15.25 -3.01 -0.05 -25.53 16 8 N -0.59 -18.30 3.12 -841.60 -2.63 -20.93 16 9 C 0.10 1.94 4.52 86.21 0.39 2.33 16 10 C -0.11 -2.14 5.44 28.96 0.16 -1.99 16 11 C -0.08 -2.46 2.47 -11.80 -0.03 -2.49 16 12 H 0.07 2.13 8.13 -2.39 -0.02 2.11 16 13 C -0.12 -4.06 6.54 31.88 0.21 -3.85 16 14 C 0.18 8.61 5.37 86.97 0.47 9.08 16 15 N -0.62 -32.63 2.94 -673.84 -1.98 -34.61 16 16 C -0.24 -14.32 9.55 84.03 0.80 -13.51 16 17 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 18 C -0.06 -3.32 5.40 84.86 0.46 -2.86 16 19 N -0.94 -57.75 10.71 21.65 0.23 -57.52 16 20 Si 0.97 48.09 29.57 68.60 2.03 50.12 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 24 C 0.16 6.66 3.38 43.24 0.15 6.81 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 C 0.13 5.64 5.31 85.90 0.46 6.09 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.71 6.56 -2.39 -0.02 0.70 16 29 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.05 1.18 7.96 -2.39 -0.02 1.16 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.06 4.38 -2.39 -0.01 1.05 16 34 H 0.10 0.87 6.56 -2.39 -0.02 0.85 16 35 H 0.07 1.34 6.93 -2.39 -0.02 1.33 16 36 H 0.12 1.43 5.24 -2.39 -0.01 1.42 16 37 H 0.12 1.48 8.09 -2.39 -0.02 1.46 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 40 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.00 0.07 7.95 -2.39 -0.02 0.05 16 42 H 0.02 1.22 7.15 -2.39 -0.02 1.20 16 43 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 44 H 0.03 1.37 7.46 -2.39 -0.02 1.35 16 45 H 0.03 1.62 7.26 -2.39 -0.02 1.60 16 Total: -1.00 -78.27 334.79 3.66 -74.61 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.95 Total: 4.83 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.10 Total: 9.02 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.38 Total: -113.06 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -78.27 3.66 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084892335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.712 kcal (2) G-P(sol) polarization free energy of solvation -78.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds