Wall clock time and date at job start Tue Mar 31 2020 02:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 H 1.09005 * 115.55195 * 29.33383 * 3 2 1 5 5 C 1.52996 * 117.51880 * 243.62600 * 3 2 1 6 6 C 1.53000 * 60.00180 * 252.52205 * 5 3 2 7 7 H 1.09000 * 117.51740 * 107.47972 * 6 5 3 8 8 C 1.50698 * 117.49805 * 252.51457 * 6 5 3 9 9 O 1.21284 * 120.00465 * 68.61777 * 8 6 5 10 10 N 1.34779 * 119.99670 * 248.62331 * 8 6 5 11 11 C 1.46504 * 119.99783 * 180.02562 * 10 8 6 12 12 H 1.08993 * 109.47378 * 34.99092 * 11 10 8 13 13 C 1.53006 * 109.46883 * 274.99286 * 11 10 8 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46817 * 60.00361 * 14 13 11 16 16 C 1.52996 * 109.46972 * 299.99733 * 15 14 13 17 17 C 1.52997 * 109.47131 * 60.00459 * 16 15 14 18 18 H 1.08993 * 109.47194 * 60.00154 * 17 16 15 19 19 N 1.46506 * 109.46949 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99462 * 274.99538 * 19 17 16 21 21 H 1.08000 * 120.00491 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99704 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00039 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99885 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47145 * 89.99898 * 24 22 20 26 26 H 1.48508 * 109.47006 * 209.99799 * 24 22 20 27 27 H 1.48498 * 109.47342 * 329.99637 * 24 22 20 28 28 H 1.09008 * 109.47527 * 299.99988 * 1 2 3 29 29 H 1.09002 * 109.47178 * 59.99841 * 1 2 3 30 30 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47090 * 240.00073 * 2 1 3 32 32 H 1.08998 * 109.46703 * 120.00251 * 2 1 3 33 33 H 1.09008 * 117.49524 * 145.03201 * 5 3 2 34 34 H 1.08993 * 117.49935 * 0.02562 * 5 3 2 35 35 H 0.97003 * 120.00044 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.46801 * 300.00349 * 13 11 10 37 37 H 1.09001 * 109.46998 * 59.99945 * 13 11 10 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.46952 * 300.00302 * 14 13 11 40 40 H 1.08996 * 109.47407 * 60.00219 * 15 14 13 41 41 H 1.09000 * 109.46986 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.46993 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.47380 * 299.99696 * 16 15 14 44 44 H 0.97000 * 120.00279 * 94.99983 * 19 17 16 45 45 H 0.97001 * 119.99919 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1716 0.4818 5 6 2.8439 1.9081 -1.2156 6 6 3.5502 1.6578 0.1184 7 1 4.1803 0.7718 0.1962 8 6 4.0228 2.8616 0.8920 9 8 3.2158 3.6162 1.3924 10 7 5.3424 3.0998 1.0277 11 6 5.8019 4.2698 1.7803 12 1 5.1236 4.4556 2.6130 13 6 5.8254 5.4915 0.8594 14 6 6.3059 6.7132 1.6451 15 6 7.7145 6.4523 2.1823 16 6 7.6910 5.2307 3.1032 17 6 7.2105 4.0090 2.3175 18 1 7.8885 3.8231 1.4845 19 7 7.1874 2.8394 3.1994 20 6 8.3266 2.1041 3.3914 21 1 9.2422 2.3866 2.8930 22 6 8.3049 0.9962 4.2274 23 7 9.3999 0.2897 4.4124 24 14 6.7216 0.5079 5.0900 25 1 5.9607 -0.4350 4.2316 26 1 7.0441 -0.1492 6.3822 27 1 5.9012 1.7198 5.3422 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.7212 2.9435 -1.5337 34 1 3.0093 1.1868 -2.0159 35 1 5.9879 2.4962 0.6278 36 1 6.5037 5.3057 0.0266 37 1 4.8220 5.6770 0.4762 38 1 6.3222 7.5837 0.9892 39 1 5.6280 6.8991 2.4781 40 1 8.3925 6.2665 1.3494 41 1 8.0571 7.3229 2.7417 42 1 8.6945 5.0451 3.4863 43 1 7.0131 5.4167 3.9363 44 1 6.3652 2.5858 3.6473 45 1 9.3847 -0.4847 4.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085337510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:14 Heat of formation + Delta-G solvation = -29.569174 kcal Electronic energy + Delta-G solvation = -22716.670981 eV Core-core repulsion = 19540.866129 eV Total energy + Delta-G solvation = -3175.804852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.05824 -38.43319 -36.75596 -34.17900 -33.77427 -32.15630 -31.36860 -29.49218 -28.20176 -24.64844 -23.79777 -23.46089 -21.83608 -20.98862 -20.52793 -20.05647 -19.37512 -17.77637 -16.94959 -16.06151 -15.17249 -14.94918 -14.73396 -14.49077 -14.27826 -14.05408 -13.55302 -13.49642 -13.17308 -12.78384 -12.59470 -12.48414 -12.28466 -12.23114 -12.20517 -11.45328 -11.38011 -11.14528 -11.02581 -10.93175 -10.87194 -10.61109 -10.38985 -10.31687 -10.13229 -10.08501 -9.81442 -9.62320 -9.50909 -8.96159 -8.67081 -7.31629 -5.81498 -3.17162 2.70257 3.34758 3.38359 3.41362 3.43988 3.82085 4.55907 4.57011 4.71884 4.77291 4.91311 5.02720 5.07053 5.16412 5.21634 5.29845 5.33959 5.42350 5.46406 5.54115 5.58961 5.66698 5.68086 5.77618 5.82455 5.86365 5.89457 5.90995 5.95997 6.01291 6.03575 6.23816 6.28815 6.37322 6.39221 6.41962 6.46650 6.79241 6.81265 6.99266 7.85157 7.94084 8.37430 8.51832 9.15716 9.88698 10.08447 11.36554 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.006206 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.408366 B = 4510.394784 C = 6434.452539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.119 4.119 4 H 0.116 0.884 5 C -0.149 4.149 6 C -0.190 4.190 7 H 0.124 0.876 8 C 0.542 3.458 9 O -0.552 6.552 10 N -0.707 5.707 11 C 0.137 3.863 12 H 0.082 0.918 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.178 3.822 18 H 0.060 0.940 19 N -0.747 5.747 20 C -0.244 4.244 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.932 5.932 24 Si 0.880 3.120 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.405 0.595 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 5.815 -11.570 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.137 4.137 4 H 0.134 0.866 5 C -0.186 4.186 6 C -0.211 4.211 7 H 0.142 0.858 8 C 0.329 3.671 9 O -0.431 6.431 10 N -0.355 5.355 11 C 0.032 3.968 12 H 0.100 0.900 13 C -0.162 4.162 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.174 4.174 17 C 0.068 3.932 18 H 0.078 0.922 19 N -0.389 5.389 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.580 5.580 24 Si 0.711 3.289 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.240 0.760 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.195 0.805 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.462 6.228 -11.202 17.877 hybrid contribution -0.560 -0.788 0.659 1.170 sum -13.022 5.440 -10.543 17.616 Atomic orbital electron populations 1.21733 0.95307 1.01512 1.02019 1.21163 0.96131 0.93812 1.02281 1.22441 0.91696 0.98546 1.01054 0.86556 1.23061 1.02360 1.02852 0.90364 1.22350 0.97600 0.99447 1.01724 0.85798 1.19597 0.82526 0.85239 0.79783 1.90651 1.54122 1.49110 1.49209 1.45911 1.06667 1.28250 1.54722 1.21350 0.97261 0.84255 0.93950 0.89973 1.21855 1.01250 0.94608 0.98453 1.21482 0.97206 0.96954 0.99596 1.21574 0.96311 0.98367 0.99493 1.22184 1.02462 0.94398 0.98365 1.20439 0.92293 0.87532 0.92917 0.92233 1.42797 1.10560 1.30532 1.54992 1.19046 0.89443 1.05380 1.23467 0.89128 1.24631 0.96435 0.97897 0.99791 1.69695 1.26333 1.20190 1.41772 0.86617 0.84281 0.78351 0.79673 1.21124 1.21753 1.20389 0.92540 0.92630 0.92709 0.91667 0.91309 0.88491 0.87984 0.75967 0.91842 0.91962 0.92275 0.92044 0.92168 0.92509 0.91100 0.92583 0.80542 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.87 37.16 0.37 -0.92 16 2 C -0.10 -0.96 6.22 -26.73 -0.17 -1.12 16 3 C -0.12 -1.40 5.25 -90.62 -0.48 -1.87 16 4 H 0.12 1.55 7.60 -51.93 -0.39 1.15 16 5 C -0.15 -1.56 9.88 -26.73 -0.26 -1.82 16 6 C -0.19 -2.47 5.91 -91.77 -0.54 -3.01 16 7 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 8 C 0.54 8.80 7.58 -10.99 -0.08 8.72 16 9 O -0.55 -10.61 15.92 5.55 0.09 -10.52 16 10 N -0.71 -11.14 4.91 -53.80 -0.26 -11.41 16 11 C 0.14 2.25 1.98 -67.93 -0.13 2.11 16 12 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 13 C -0.12 -1.69 5.49 -26.73 -0.15 -1.83 16 14 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 16 C -0.13 -2.25 5.50 -26.73 -0.15 -2.39 16 17 C 0.18 3.25 2.29 -67.93 -0.16 3.09 16 18 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 19 N -0.75 -16.96 4.76 -53.42 -0.25 -17.22 16 20 C -0.24 -6.58 10.41 -15.06 -0.16 -6.73 16 21 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 22 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 23 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 24 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 16 25 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 27 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.10 0.86 8.03 -51.93 -0.42 0.45 16 35 H 0.41 6.03 8.60 -40.82 -0.35 5.68 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.36 8.51 5.66 -40.82 -0.23 8.28 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -31.30 359.53 -9.40 -40.69 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.13 Total: 12.44 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.32 Total: -8.99 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.26 Total: -56.54 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.30 -9.40 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085337510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.124 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds