Wall clock time and date at job start Tue Mar 31 2020 02:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 H 1.09005 * 115.55195 * 29.33383 * 3 2 1 5 5 C 1.52996 * 117.51880 * 243.62600 * 3 2 1 6 6 C 1.53000 * 60.00180 * 252.52205 * 5 3 2 7 7 H 1.09000 * 117.51740 * 107.47972 * 6 5 3 8 8 C 1.50698 * 117.49805 * 252.51457 * 6 5 3 9 9 O 1.21284 * 120.00465 * 68.61777 * 8 6 5 10 10 N 1.34779 * 119.99670 * 248.62331 * 8 6 5 11 11 C 1.46504 * 119.99783 * 180.02562 * 10 8 6 12 12 H 1.08993 * 109.47378 * 34.99092 * 11 10 8 13 13 C 1.53006 * 109.46883 * 274.99286 * 11 10 8 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46817 * 60.00361 * 14 13 11 16 16 C 1.52996 * 109.46972 * 299.99733 * 15 14 13 17 17 C 1.52997 * 109.47131 * 60.00459 * 16 15 14 18 18 H 1.08993 * 109.47194 * 60.00154 * 17 16 15 19 19 N 1.46506 * 109.46949 * 180.02562 * 17 16 15 20 20 C 1.36940 * 119.99462 * 274.99538 * 19 17 16 21 21 H 1.08000 * 120.00491 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99704 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00039 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99885 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47145 * 89.99898 * 24 22 20 26 26 H 1.48508 * 109.47006 * 209.99799 * 24 22 20 27 27 H 1.48498 * 109.47342 * 329.99637 * 24 22 20 28 28 H 1.09008 * 109.47527 * 299.99988 * 1 2 3 29 29 H 1.09002 * 109.47178 * 59.99841 * 1 2 3 30 30 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47090 * 240.00073 * 2 1 3 32 32 H 1.08998 * 109.46703 * 120.00251 * 2 1 3 33 33 H 1.09008 * 117.49524 * 145.03201 * 5 3 2 34 34 H 1.08993 * 117.49935 * 0.02562 * 5 3 2 35 35 H 0.97003 * 120.00044 * 359.97438 * 10 8 6 36 36 H 1.09001 * 109.46801 * 300.00349 * 13 11 10 37 37 H 1.09001 * 109.46998 * 59.99945 * 13 11 10 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.46952 * 300.00302 * 14 13 11 40 40 H 1.08996 * 109.47407 * 60.00219 * 15 14 13 41 41 H 1.09000 * 109.46986 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.46993 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.47380 * 299.99696 * 16 15 14 44 44 H 0.97000 * 120.00279 * 94.99983 * 19 17 16 45 45 H 0.97001 * 119.99919 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1716 0.4818 5 6 2.8439 1.9081 -1.2156 6 6 3.5502 1.6578 0.1184 7 1 4.1803 0.7718 0.1962 8 6 4.0228 2.8616 0.8920 9 8 3.2158 3.6162 1.3924 10 7 5.3424 3.0998 1.0277 11 6 5.8019 4.2698 1.7803 12 1 5.1236 4.4556 2.6130 13 6 5.8254 5.4915 0.8594 14 6 6.3059 6.7132 1.6451 15 6 7.7145 6.4523 2.1823 16 6 7.6910 5.2307 3.1032 17 6 7.2105 4.0090 2.3175 18 1 7.8885 3.8231 1.4845 19 7 7.1874 2.8394 3.1994 20 6 8.3266 2.1041 3.3914 21 1 9.2422 2.3866 2.8930 22 6 8.3049 0.9962 4.2274 23 7 9.3999 0.2897 4.4124 24 14 6.7216 0.5079 5.0900 25 1 5.9607 -0.4350 4.2316 26 1 7.0441 -0.1492 6.3822 27 1 5.9012 1.7198 5.3422 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.7212 2.9435 -1.5337 34 1 3.0093 1.1868 -2.0159 35 1 5.9879 2.4962 0.6278 36 1 6.5037 5.3057 0.0266 37 1 4.8220 5.6770 0.4762 38 1 6.3222 7.5837 0.9892 39 1 5.6280 6.8991 2.4781 40 1 8.3925 6.2665 1.3494 41 1 8.0571 7.3229 2.7417 42 1 8.6945 5.0451 3.4863 43 1 7.0131 5.4167 3.9363 44 1 6.3652 2.5858 3.6473 45 1 9.3847 -0.4847 4.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085337510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:13 Heat of formation + Delta-G solvation = -48.736318 kcal Electronic energy + Delta-G solvation = -22717.502131 eV Core-core repulsion = 19540.866129 eV Total energy + Delta-G solvation = -3176.636002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31163 -39.67517 -37.85316 -35.95412 -35.11237 -33.35434 -32.94037 -30.76944 -29.76087 -25.79986 -25.24341 -24.60029 -23.07920 -22.46848 -21.48097 -21.26592 -20.67904 -19.66744 -18.20715 -17.39627 -16.80060 -16.23969 -16.02565 -15.63903 -15.41602 -15.17202 -15.02300 -14.76199 -14.69696 -14.47716 -13.79523 -13.73575 -13.47247 -13.37596 -13.09667 -12.98583 -12.95913 -12.42712 -12.21580 -12.19575 -12.10636 -11.94332 -11.85389 -11.74018 -11.50669 -11.27087 -11.15898 -11.06133 -10.99074 -10.68288 -9.99415 -9.32933 -8.03805 -5.35644 1.32932 1.35111 1.40825 1.50166 2.18548 2.44098 2.84663 3.27814 3.43425 3.62451 3.72893 3.77499 3.86730 4.09324 4.16407 4.20303 4.23385 4.26896 4.38828 4.45215 4.46862 4.53997 4.57018 4.64925 4.75867 4.90279 4.92145 4.95599 5.00385 5.12625 5.13839 5.20744 5.21195 5.25624 5.26871 5.28277 5.43808 5.47323 5.52233 5.63803 5.77234 6.20379 6.58752 7.05095 7.25448 7.81404 7.99625 9.17558 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.006206 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.408366 B = 4510.394784 C = 6434.452539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.122 4.122 4 H 0.096 0.904 5 C -0.123 4.123 6 C -0.207 4.207 7 H 0.133 0.867 8 C 0.538 3.462 9 O -0.588 6.588 10 N -0.706 5.706 11 C 0.144 3.856 12 H 0.058 0.942 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.110 4.110 16 C -0.130 4.130 17 C 0.176 3.824 18 H 0.061 0.939 19 N -0.749 5.749 20 C -0.218 4.218 21 H 0.066 0.934 22 C -0.053 4.053 23 N -0.979 5.979 24 Si 0.941 3.059 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.270 1.270 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.359 0.641 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 6.578 -13.358 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.141 4.141 4 H 0.114 0.886 5 C -0.161 4.161 6 C -0.228 4.228 7 H 0.150 0.850 8 C 0.326 3.674 9 O -0.469 6.469 10 N -0.355 5.355 11 C 0.039 3.961 12 H 0.076 0.924 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.068 3.932 18 H 0.079 0.921 19 N -0.391 5.391 20 C -0.349 4.349 21 H 0.084 0.916 22 C -0.245 4.245 23 N -0.630 5.630 24 Si 0.770 3.230 25 H -0.205 1.205 26 H -0.224 1.224 27 H -0.195 1.195 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.246 0.754 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.191 0.809 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.801 7.034 -13.024 20.238 hybrid contribution -0.115 -0.944 1.171 1.508 sum -13.916 6.090 -11.853 19.268 Atomic orbital electron populations 1.21726 0.94478 1.02281 1.01958 1.21177 0.96855 0.92455 1.02633 1.22475 0.90462 0.99328 1.01807 0.88601 1.23178 0.99525 1.03525 0.89839 1.22363 0.98553 0.98325 1.03600 0.84956 1.20156 0.82128 0.85735 0.79411 1.90629 1.54867 1.50627 1.50778 1.45948 1.06914 1.28206 1.54387 1.21213 0.94983 0.85831 0.94098 0.92358 1.21793 1.01537 0.93656 0.98290 1.21481 0.96256 0.97300 0.99782 1.21513 0.97247 0.96971 0.99115 1.22073 1.00687 0.95502 0.98775 1.20651 0.93806 0.86469 0.92293 0.92103 1.42829 1.09023 1.31598 1.55668 1.19007 0.89729 1.04743 1.21413 0.91560 1.25254 0.99152 0.98603 1.01465 1.69841 1.28519 1.21178 1.43452 0.85632 0.80926 0.78165 0.78276 1.20461 1.22405 1.19528 0.93517 0.91831 0.91509 0.89885 0.92349 0.88653 0.85130 0.75431 0.90381 0.92301 0.89449 0.92569 0.91168 0.90728 0.93319 0.93361 0.80884 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.87 71.98 0.71 -1.59 16 2 C -0.09 -1.68 6.22 30.59 0.19 -1.49 16 3 C -0.12 -2.70 5.25 -10.79 -0.06 -2.76 16 4 H 0.10 2.54 7.60 -2.38 -0.02 2.52 16 5 C -0.12 -2.28 9.88 30.59 0.30 -1.97 16 6 C -0.21 -5.10 5.91 -11.54 -0.07 -5.17 16 7 H 0.13 3.01 8.14 -2.39 -0.02 3.00 16 8 C 0.54 17.14 7.58 87.66 0.66 17.80 16 9 O -0.59 -22.63 15.92 -3.04 -0.05 -22.68 16 10 N -0.71 -21.71 4.91 -442.52 -2.17 -23.89 16 11 C 0.14 4.61 1.98 44.99 0.09 4.70 16 12 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 13 C -0.11 -2.89 5.49 30.60 0.17 -2.73 16 14 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 15 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 16 C -0.13 -4.29 5.50 30.59 0.17 -4.12 16 17 C 0.18 6.32 2.29 44.99 0.10 6.42 16 18 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 19 N -0.75 -34.00 4.76 -322.94 -1.54 -35.53 16 20 C -0.22 -11.91 10.41 84.03 0.87 -11.03 16 21 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 22 C -0.05 -3.06 5.50 84.86 0.47 -2.59 16 23 N -0.98 -61.57 13.97 21.65 0.30 -61.26 16 24 Si 0.94 46.44 27.74 68.60 1.90 48.35 16 25 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 27 H -0.27 -12.76 6.52 99.48 0.65 -12.12 16 28 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.19 7.88 -2.39 -0.02 1.17 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.13 1.69 8.03 -2.39 -0.02 1.67 16 35 H 0.41 11.81 8.60 -92.71 -0.80 11.01 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.36 16.75 5.66 -92.71 -0.52 16.22 16 45 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -68.54 359.53 2.00 -66.53 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.42 Total: 37.78 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 3.97 Total: -9.30 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -3.41 Total: -120.68 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.35 kcal Total: -68.54 2.00 -66.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085337510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.798 kcal (2) G-P(sol) polarization free energy of solvation -68.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds