Wall clock time and date at job start Tue Mar 31 2020 01:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47564 * 2 1 4 4 C 1.53000 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.56172 * 29.31675 * 4 3 2 6 6 C 1.53079 * 117.49410 * 243.60225 * 4 3 2 7 7 C 1.52997 * 59.98583 * 252.51310 * 6 4 3 8 8 H 1.09005 * 117.50038 * 107.49601 * 7 6 4 9 9 C 1.50696 * 117.50132 * 252.49879 * 7 6 4 10 10 O 1.21284 * 120.00158 * 68.75074 * 9 7 6 11 11 N 1.34782 * 119.99990 * 248.74538 * 9 7 6 12 12 C 1.46499 * 119.99847 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46974 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.84949 * 45.33483 * 13 12 11 15 15 C 1.53781 * 113.61707 * 176.53042 * 13 12 11 16 16 C 1.53777 * 87.08336 * 140.06298 * 15 13 12 17 17 H 1.09003 * 113.60961 * 89.20081 * 16 15 13 18 18 N 1.46500 * 113.61534 * 220.01705 * 16 15 13 19 19 C 1.36934 * 120.00053 * 205.00207 * 18 16 15 20 20 H 1.07998 * 119.99920 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00218 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00110 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99766 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47624 * 89.99811 * 23 21 19 25 25 H 1.48502 * 109.46934 * 210.00116 * 23 21 19 26 26 H 1.48498 * 109.47160 * 329.99811 * 23 21 19 27 27 C 1.53775 * 87.07992 * 334.56762 * 16 15 13 28 28 H 1.08994 * 109.46892 * 300.00293 * 1 2 3 29 29 H 1.09004 * 109.46482 * 59.99734 * 1 2 3 30 30 H 1.08995 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47226 * 239.99921 * 2 1 3 32 32 H 1.09000 * 109.47117 * 120.00605 * 2 1 3 33 33 H 1.09003 * 109.47294 * 60.00088 * 3 2 1 34 34 H 1.08999 * 109.47751 * 300.00024 * 3 2 1 35 35 H 1.09002 * 117.50802 * 145.03678 * 6 4 3 36 36 H 1.08994 * 117.49398 * 0.02562 * 6 4 3 37 37 H 0.96991 * 119.99849 * 0.02562 * 11 9 7 38 38 H 1.09001 * 109.46950 * 60.00362 * 12 11 9 39 39 H 1.08992 * 109.47264 * 300.00256 * 12 11 9 40 40 H 1.08997 * 113.61673 * 254.61847 * 15 13 12 41 41 H 1.09005 * 113.61396 * 25.51675 * 15 13 12 42 42 H 0.97002 * 120.00084 * 25.00713 * 18 16 15 43 43 H 0.97006 * 119.99918 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.61636 * 270.87622 * 27 16 15 45 45 H 1.09008 * 113.61006 * 139.97865 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 4.0405 0.5849 -0.4805 6 6 4.2763 2.0462 1.2172 7 6 4.2767 2.7943 -0.1174 8 1 3.6515 3.6837 -0.1961 9 6 5.5698 2.8384 -0.8900 10 8 6.0116 1.8262 -1.3912 11 7 6.2353 4.0028 -1.0242 12 6 7.4926 4.0455 -1.7748 13 6 8.0383 5.4749 -1.7746 14 1 7.9982 5.9431 -0.7911 15 6 9.4043 5.6129 -2.4673 16 6 8.8830 6.9334 -3.0585 17 1 9.0751 7.8005 -2.4266 18 7 9.2762 7.1476 -4.4534 19 6 9.3527 8.4192 -4.9557 20 1 9.1235 9.2642 -4.3234 21 6 9.7247 8.6221 -6.2775 22 7 9.7977 9.8443 -6.7604 23 14 10.1203 7.1605 -7.3713 24 1 8.8822 6.7007 -8.0503 25 1 11.1236 7.5618 -8.3899 26 1 10.6697 6.0570 -6.5434 27 6 7.4673 6.3544 -2.8994 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8899 35 1 5.2114 1.5859 1.5363 36 1 3.6506 2.4428 2.0166 37 1 5.8821 4.8122 -0.6231 38 1 7.3142 3.7245 -2.8010 39 1 8.2180 3.3800 -1.3068 40 1 10.2347 5.7429 -1.7733 41 1 9.5938 4.8440 -3.2163 42 1 9.4823 6.3886 -5.0212 43 1 10.0573 9.9861 -7.6842 44 1 7.1271 5.7883 -3.7664 45 1 6.7338 7.0832 -2.5542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086190113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:58 Heat of formation + Delta-G solvation = -3.579611 kcal Electronic energy + Delta-G solvation = -21020.075092 eV Core-core repulsion = 17845.397232 eV Total energy + Delta-G solvation = -3174.677860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21330 -38.80449 -37.39295 -34.75961 -34.19061 -33.31982 -30.78240 -28.39046 -27.41060 -25.22210 -24.38335 -23.22137 -22.28037 -21.01053 -20.89800 -20.17895 -19.26643 -17.48568 -17.35714 -16.20946 -15.63404 -15.45576 -15.08889 -14.93360 -14.44784 -14.35998 -13.84962 -13.66130 -13.31017 -13.06015 -12.69303 -12.56528 -12.39521 -12.21403 -11.99609 -11.68696 -11.62891 -11.57305 -11.40843 -11.18638 -10.91405 -10.56919 -10.49831 -10.36362 -10.32589 -10.15433 -9.90201 -9.77070 -9.55032 -9.08477 -8.90545 -7.28472 -5.79801 -3.15294 2.37477 3.02464 3.36709 3.40020 3.44624 3.53891 4.24424 4.43215 4.49304 4.57055 4.71291 4.78064 4.80779 4.86659 4.91817 4.94672 5.10726 5.16011 5.35671 5.36288 5.38714 5.40230 5.44354 5.49676 5.61017 5.66435 5.69380 5.71697 5.78102 5.85117 5.85855 5.90072 6.05096 6.16334 6.18062 6.21909 6.38408 6.48797 6.67105 6.96434 7.43098 7.96543 8.14695 8.40017 9.17842 9.90678 10.10504 11.38358 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.002473 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.472246 B =11317.833974 C =11665.615423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.118 4.118 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.191 4.191 8 H 0.123 0.877 9 C 0.539 3.461 10 O -0.545 6.545 11 N -0.721 5.721 12 C 0.132 3.868 13 C -0.127 4.127 14 H 0.091 0.909 15 C -0.146 4.146 16 C 0.172 3.828 17 H 0.084 0.916 18 N -0.737 5.737 19 C -0.248 4.248 20 H 0.091 0.909 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.160 4.160 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.077 0.923 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 -16.874 18.260 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.136 4.136 5 H 0.136 0.864 6 C -0.187 4.187 7 C -0.212 4.212 8 H 0.141 0.859 9 C 0.325 3.675 10 O -0.423 6.423 11 N -0.371 5.371 12 C 0.008 3.992 13 C -0.146 4.146 14 H 0.109 0.891 15 C -0.185 4.185 16 C 0.060 3.940 17 H 0.102 0.898 18 N -0.377 5.377 19 C -0.378 4.378 20 H 0.109 0.891 21 C -0.192 4.192 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.201 4.201 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.236 0.764 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.589 -17.305 17.809 28.801 hybrid contribution 0.156 -0.422 -0.753 0.878 sum -14.434 -17.728 17.056 28.522 Atomic orbital electron populations 1.21782 0.95837 1.01667 1.01811 1.21502 0.95688 0.96465 1.02355 1.21251 0.91863 0.97430 1.02263 1.22465 0.94706 0.95467 1.00999 0.86449 1.23107 1.03098 1.02157 0.90292 1.22318 0.97865 0.98979 1.02039 0.85906 1.19670 0.84644 0.83268 0.79877 1.90694 1.68751 1.34141 1.48701 1.45969 1.24901 1.10754 1.55525 1.21424 0.84285 0.97117 0.96327 1.22636 0.98602 0.94032 0.99317 0.89086 1.23469 0.95172 1.00356 0.99525 1.21507 0.91663 0.94210 0.86591 0.89802 1.42765 1.81813 1.05468 1.07630 1.19136 1.39217 0.84091 0.95375 0.89137 1.24700 1.01470 0.96008 0.96985 1.69703 1.54275 1.18799 1.15239 0.86551 0.78124 0.82922 0.80956 1.21047 1.21676 1.20279 1.23907 1.00725 0.98647 0.96857 0.92789 0.92690 0.92733 0.91763 0.91834 0.91619 0.91311 0.88355 0.87827 0.76438 0.91365 0.91799 0.91628 0.90350 0.80446 0.93027 0.90467 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.77 5.89 -26.74 -0.16 -0.93 16 3 C -0.09 -0.60 5.50 -26.73 -0.15 -0.75 16 4 C -0.12 -0.99 5.25 -90.58 -0.48 -1.47 16 5 H 0.12 1.22 7.60 -51.93 -0.39 0.82 16 6 C -0.15 -1.10 9.88 -26.69 -0.26 -1.36 16 7 C -0.19 -1.68 5.91 -91.77 -0.54 -2.23 16 8 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.54 6.65 7.61 -10.98 -0.08 6.56 16 10 O -0.55 -8.92 16.26 5.55 0.09 -8.83 16 11 N -0.72 -7.88 5.56 -60.30 -0.33 -8.21 16 12 C 0.13 1.65 5.50 -4.04 -0.02 1.63 16 13 C -0.13 -1.58 3.75 -89.81 -0.34 -1.92 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.15 -2.16 7.39 -25.92 -0.19 -2.35 16 16 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 17 H 0.08 1.56 8.10 -51.93 -0.42 1.13 16 18 N -0.74 -17.26 5.20 -52.64 -0.27 -17.53 16 19 C -0.25 -6.96 10.45 -15.06 -0.16 -7.11 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 22 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 23 Si 0.88 22.20 27.74 -169.99 -4.71 17.48 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 27 C -0.16 -2.49 7.43 -25.92 -0.19 -2.69 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.56 8.03 -51.93 -0.42 0.15 16 37 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 38 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 42 H 0.36 8.40 5.78 -40.82 -0.24 8.17 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 45 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -32.95 367.73 -9.64 -42.59 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.13 Total: 7.64 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.60 Total: -10.21 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.17 Total: -54.21 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.95 -9.64 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086190113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.013 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds