Wall clock time and date at job start Tue Mar 31 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47564 * 2 1 4 4 C 1.53000 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.56172 * 29.31675 * 4 3 2 6 6 C 1.53079 * 117.49410 * 243.60225 * 4 3 2 7 7 C 1.52997 * 59.98583 * 252.51310 * 6 4 3 8 8 H 1.09005 * 117.50038 * 107.49601 * 7 6 4 9 9 C 1.50696 * 117.50132 * 252.49879 * 7 6 4 10 10 O 1.21284 * 120.00158 * 68.75074 * 9 7 6 11 11 N 1.34782 * 119.99990 * 248.74538 * 9 7 6 12 12 C 1.46499 * 119.99847 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46974 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.84949 * 45.33483 * 13 12 11 15 15 C 1.53781 * 113.61707 * 176.53042 * 13 12 11 16 16 C 1.53777 * 87.08336 * 140.06298 * 15 13 12 17 17 H 1.09003 * 113.60961 * 89.20081 * 16 15 13 18 18 N 1.46500 * 113.61534 * 220.01705 * 16 15 13 19 19 C 1.36934 * 120.00053 * 205.00207 * 18 16 15 20 20 H 1.07998 * 119.99920 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00218 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00110 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99766 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47624 * 89.99811 * 23 21 19 25 25 H 1.48502 * 109.46934 * 210.00116 * 23 21 19 26 26 H 1.48498 * 109.47160 * 329.99811 * 23 21 19 27 27 C 1.53775 * 87.07992 * 334.56762 * 16 15 13 28 28 H 1.08994 * 109.46892 * 300.00293 * 1 2 3 29 29 H 1.09004 * 109.46482 * 59.99734 * 1 2 3 30 30 H 1.08995 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47226 * 239.99921 * 2 1 3 32 32 H 1.09000 * 109.47117 * 120.00605 * 2 1 3 33 33 H 1.09003 * 109.47294 * 60.00088 * 3 2 1 34 34 H 1.08999 * 109.47751 * 300.00024 * 3 2 1 35 35 H 1.09002 * 117.50802 * 145.03678 * 6 4 3 36 36 H 1.08994 * 117.49398 * 0.02562 * 6 4 3 37 37 H 0.96991 * 119.99849 * 0.02562 * 11 9 7 38 38 H 1.09001 * 109.46950 * 60.00362 * 12 11 9 39 39 H 1.08992 * 109.47264 * 300.00256 * 12 11 9 40 40 H 1.08997 * 113.61673 * 254.61847 * 15 13 12 41 41 H 1.09005 * 113.61396 * 25.51675 * 15 13 12 42 42 H 0.97002 * 120.00084 * 25.00713 * 18 16 15 43 43 H 0.97006 * 119.99918 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.61636 * 270.87622 * 27 16 15 45 45 H 1.09008 * 113.61006 * 139.97865 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 4.0405 0.5849 -0.4805 6 6 4.2763 2.0462 1.2172 7 6 4.2767 2.7943 -0.1174 8 1 3.6515 3.6837 -0.1961 9 6 5.5698 2.8384 -0.8900 10 8 6.0116 1.8262 -1.3912 11 7 6.2353 4.0028 -1.0242 12 6 7.4926 4.0455 -1.7748 13 6 8.0383 5.4749 -1.7746 14 1 7.9982 5.9431 -0.7911 15 6 9.4043 5.6129 -2.4673 16 6 8.8830 6.9334 -3.0585 17 1 9.0751 7.8005 -2.4266 18 7 9.2762 7.1476 -4.4534 19 6 9.3527 8.4192 -4.9557 20 1 9.1235 9.2642 -4.3234 21 6 9.7247 8.6221 -6.2775 22 7 9.7977 9.8443 -6.7604 23 14 10.1203 7.1605 -7.3713 24 1 8.8822 6.7007 -8.0503 25 1 11.1236 7.5618 -8.3899 26 1 10.6697 6.0570 -6.5434 27 6 7.4673 6.3544 -2.8994 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8899 35 1 5.2114 1.5859 1.5363 36 1 3.6506 2.4428 2.0166 37 1 5.8821 4.8122 -0.6231 38 1 7.3142 3.7245 -2.8010 39 1 8.2180 3.3800 -1.3068 40 1 10.2347 5.7429 -1.7733 41 1 9.5938 4.8440 -3.2163 42 1 9.4823 6.3886 -5.0212 43 1 10.0573 9.9861 -7.6842 44 1 7.1271 5.7883 -3.7664 45 1 6.7338 7.0832 -2.5542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086190113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:57 Heat of formation + Delta-G solvation = -24.552331 kcal Electronic energy + Delta-G solvation = -21020.984537 eV Core-core repulsion = 17845.397232 eV Total energy + Delta-G solvation = -3175.587306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15024 -40.02802 -38.16232 -36.11180 -35.01475 -34.71721 -32.76200 -29.40226 -28.14083 -26.48440 -25.85692 -24.46771 -22.82520 -22.34540 -21.56173 -21.20219 -20.56175 -19.36491 -18.26120 -17.28428 -16.70714 -16.43340 -16.18035 -16.02734 -15.81918 -15.41430 -15.02385 -14.68766 -14.46218 -14.18065 -13.96562 -13.71241 -13.27236 -13.24228 -13.09716 -13.05091 -12.92452 -12.69641 -12.20114 -12.16836 -11.96217 -11.91386 -11.72471 -11.67821 -11.59558 -11.20210 -11.13052 -11.00530 -10.88529 -10.70374 -10.08095 -9.27650 -8.03716 -5.35916 1.36482 1.38789 1.46034 1.48016 2.15257 2.46715 2.86318 3.26615 3.57221 3.58949 3.71821 3.75823 3.83690 3.90142 4.07885 4.18771 4.22920 4.27066 4.30409 4.36542 4.39975 4.53711 4.64976 4.73884 4.85356 4.88714 4.93899 4.95059 4.96118 5.00323 5.02318 5.08282 5.20517 5.21844 5.32467 5.36599 5.40795 5.44738 5.52211 5.64965 5.77436 6.22301 6.56876 7.07059 7.24906 7.85531 8.03021 9.17719 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.002473 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.472246 B =11317.833974 C =11665.615423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.126 4.126 5 H 0.090 0.910 6 C -0.132 4.132 7 C -0.194 4.194 8 H 0.148 0.852 9 C 0.533 3.467 10 O -0.593 6.593 11 N -0.710 5.710 12 C 0.137 3.863 13 C -0.096 4.096 14 H 0.121 0.879 15 C -0.137 4.137 16 C 0.145 3.855 17 H 0.079 0.921 18 N -0.745 5.745 19 C -0.231 4.231 20 H 0.061 0.939 21 C -0.067 4.067 22 N -0.983 5.983 23 Si 0.953 3.047 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.253 1.253 27 C -0.154 4.154 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.417 0.583 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.034 -18.206 20.382 31.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.121 4.121 4 C -0.145 4.145 5 H 0.109 0.891 6 C -0.169 4.169 7 C -0.215 4.215 8 H 0.166 0.834 9 C 0.321 3.679 10 O -0.475 6.475 11 N -0.361 5.361 12 C 0.013 3.987 13 C -0.115 4.115 14 H 0.138 0.862 15 C -0.176 4.176 16 C 0.037 3.963 17 H 0.097 0.903 18 N -0.385 5.385 19 C -0.362 4.362 20 H 0.079 0.921 21 C -0.258 4.258 22 N -0.634 5.634 23 Si 0.780 3.220 24 H -0.208 1.208 25 H -0.222 1.222 26 H -0.178 1.178 27 C -0.195 4.195 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.254 0.746 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.693 -18.653 20.007 31.536 hybrid contribution 0.469 0.019 -1.312 1.394 sum -15.223 -18.634 18.695 30.471 Atomic orbital electron populations 1.21771 0.95081 1.01970 1.02130 1.21501 0.96321 0.96382 1.01909 1.21226 0.90372 0.97611 1.02934 1.22448 0.95792 0.94418 1.01842 0.89135 1.23202 1.02824 1.00693 0.90177 1.22361 0.96377 1.00129 1.02645 0.83406 1.20307 0.85501 0.82693 0.79397 1.90675 1.70173 1.35818 1.50786 1.45868 1.24201 1.11224 1.54849 1.21238 0.85096 0.96842 0.95542 1.22463 0.96104 0.93485 0.99448 0.86150 1.23363 0.97024 0.97593 0.99644 1.21941 0.94174 0.96037 0.84183 0.90251 1.42807 1.82395 1.03598 1.09749 1.19136 1.36866 0.85285 0.94901 0.92150 1.25503 1.02710 0.98814 0.98772 1.69878 1.56685 1.21297 1.15534 0.85441 0.77731 0.79961 0.78846 1.20774 1.22243 1.17781 1.23729 0.98970 0.99029 0.97738 0.91938 0.92865 0.92507 0.93010 0.91584 0.89825 0.91635 0.89289 0.84963 0.74640 0.93381 0.91731 0.89939 0.90705 0.80247 0.93413 0.91848 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.42 5.89 30.59 0.18 -1.24 16 3 C -0.08 -0.95 5.50 30.59 0.17 -0.78 16 4 C -0.13 -1.96 5.25 -10.77 -0.06 -2.02 16 5 H 0.09 1.92 7.60 -2.39 -0.02 1.90 16 6 C -0.13 -1.60 9.88 30.62 0.30 -1.30 16 7 C -0.19 -2.98 5.91 -11.54 -0.07 -3.05 16 8 H 0.15 1.52 8.14 -2.38 -0.02 1.50 16 9 C 0.53 12.41 7.61 87.66 0.67 13.08 16 10 O -0.59 -19.42 16.26 -3.04 -0.05 -19.47 16 11 N -0.71 -13.84 5.56 -463.06 -2.57 -16.41 16 12 C 0.14 3.14 5.50 86.38 0.48 3.62 16 13 C -0.10 -2.11 3.75 -10.27 -0.04 -2.14 16 14 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.14 -3.71 7.39 31.12 0.23 -3.48 16 16 C 0.15 5.14 4.48 45.51 0.20 5.35 16 17 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 18 N -0.74 -34.36 5.20 -320.46 -1.67 -36.03 16 19 C -0.23 -13.10 10.45 84.03 0.88 -12.22 16 20 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.98 -63.33 13.97 21.65 0.30 -63.03 16 23 Si 0.95 46.16 27.74 68.60 1.90 48.06 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.25 -11.12 6.52 99.48 0.65 -10.48 16 27 C -0.15 -4.50 7.43 31.12 0.23 -4.27 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.66 7.87 -2.39 -0.02 0.64 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.13 0.88 8.03 -2.39 -0.02 0.86 16 37 H 0.42 5.57 8.47 -92.71 -0.79 4.79 16 38 H 0.05 1.33 7.88 -2.39 -0.02 1.31 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.12 8.08 -2.38 -0.02 2.10 16 42 H 0.36 16.38 5.78 -92.71 -0.54 15.85 16 43 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 44 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 45 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -73.61 367.73 1.85 -71.76 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.42 Total: 27.79 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 4.35 Total: -12.68 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -3.94 Total: -115.47 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.06 kcal Total: -73.61 1.85 -71.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086190113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.210 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds