Wall clock time and date at job start Tue Mar 31 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47601 * 2 1 4 4 C 1.53006 * 109.46996 * 119.99700 * 2 1 3 5 5 H 1.09004 * 115.54814 * 276.37954 * 4 2 1 6 6 C 1.52998 * 117.51856 * 130.67024 * 4 2 1 7 7 C 1.52998 * 60.00175 * 252.52098 * 6 4 2 8 8 H 1.09007 * 117.52350 * 252.51932 * 7 6 4 9 9 C 1.50699 * 117.50038 * 107.49255 * 7 6 4 10 10 O 1.21283 * 119.99776 * 329.23926 * 9 7 6 11 11 N 1.34775 * 120.00532 * 149.24730 * 9 7 6 12 12 C 1.46497 * 120.00274 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47117 * 179.97438 * 12 11 9 14 14 H 1.08996 * 112.85215 * 314.66546 * 13 12 11 15 15 C 1.53786 * 113.61477 * 85.85895 * 13 12 11 16 16 C 1.53959 * 87.02044 * 139.94918 * 15 13 12 17 17 H 1.08999 * 113.66795 * 220.06716 * 16 15 13 18 18 N 1.46501 * 113.61042 * 89.19649 * 16 15 13 19 19 C 1.36940 * 119.99599 * 107.47026 * 18 16 15 20 20 H 1.07997 * 120.00132 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99748 * 180.02562 * 19 18 16 22 22 N 1.31613 * 120.00029 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47508 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47619 * 119.99486 * 23 21 19 26 26 H 1.48503 * 109.47115 * 239.99506 * 23 21 19 27 27 C 1.53782 * 87.11117 * 334.63843 * 16 15 13 28 28 H 1.09005 * 109.47156 * 294.02743 * 1 2 3 29 29 H 1.09003 * 109.47117 * 54.02250 * 1 2 3 30 30 H 1.08995 * 109.47897 * 174.02155 * 1 2 3 31 31 H 1.09000 * 109.47515 * 239.99422 * 2 1 3 32 32 H 1.09002 * 109.47081 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46753 * 299.99729 * 3 2 1 34 34 H 1.09001 * 109.47276 * 59.99745 * 3 2 1 35 35 H 1.09003 * 117.49768 * 145.03260 * 6 4 2 36 36 H 1.08997 * 117.50175 * 0.02562 * 6 4 2 37 37 H 0.97005 * 119.99359 * 359.97438 * 11 9 7 38 38 H 1.08991 * 109.47335 * 59.98963 * 12 11 9 39 39 H 1.09011 * 109.46741 * 299.99243 * 12 11 9 40 40 H 1.09002 * 113.61585 * 254.53138 * 15 13 12 41 41 H 1.09004 * 113.61311 * 25.43444 * 15 13 12 42 42 H 0.96997 * 120.00305 * 287.47489 * 18 16 15 43 43 H 0.97006 * 119.99946 * 180.02562 * 22 21 19 44 44 H 1.08995 * 113.61199 * 270.80983 * 27 16 15 45 45 H 1.08995 * 113.69012 * 139.91449 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.0936 -0.1146 2.1534 6 6 3.1093 -1.7984 1.0568 7 6 1.6755 -2.1984 1.4105 8 1 1.4890 -2.5636 2.4205 9 6 0.8422 -2.8319 0.3263 10 8 1.0279 -2.5325 -0.8342 11 7 -0.1094 -3.7310 0.6463 12 6 -0.9191 -4.3472 -0.4077 13 6 -1.9163 -5.3231 0.2200 14 1 -1.4626 -5.9644 0.9755 15 6 -3.2230 -4.6565 0.6819 16 6 -3.9539 -5.8985 0.1401 17 1 -4.8883 -5.6678 -0.3716 18 7 -4.0954 -6.9728 1.1261 19 6 -5.3198 -7.2377 1.6790 20 1 -6.1811 -6.6544 1.3885 21 6 -5.4538 -8.2552 2.6137 22 7 -4.4041 -8.9657 2.9680 23 14 -7.1242 -8.6171 3.3674 24 1 -8.1336 -7.6841 2.8053 25 1 -7.5151 -10.0156 3.0567 26 1 -7.0519 -8.4388 4.8399 27 6 -2.7612 -6.0891 -0.8117 28 1 -0.3634 0.4185 0.9387 29 1 -0.3633 0.6037 -0.8317 30 1 -0.3635 -1.0220 -0.1070 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4423 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 3.8665 -1.9004 1.8341 36 1 3.4500 -1.9932 0.0399 37 1 -0.2577 -3.9707 1.5745 38 1 -0.2691 -4.8858 -1.0972 39 1 -1.4609 -3.5720 -0.9497 40 1 -3.2965 -4.5426 1.7634 41 1 -3.4603 -3.7400 0.1416 42 1 -3.3217 -7.4963 1.3873 43 1 -4.4977 -9.6770 3.6209 44 1 -2.8720 -5.5651 -1.7610 45 1 -2.4614 -7.1298 -0.9352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086518287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:20 Heat of formation + Delta-G solvation = 1.693010 kcal Electronic energy + Delta-G solvation = -21891.035964 eV Core-core repulsion = 18716.586742 eV Total energy + Delta-G solvation = -3174.449222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42912 -38.75762 -37.17235 -34.56072 -33.56070 -33.16237 -30.22098 -27.81107 -27.21043 -25.07751 -24.39681 -23.42613 -23.03367 -21.60159 -20.61120 -19.77676 -18.33033 -17.34305 -16.97338 -16.11336 -15.70150 -15.04076 -14.92490 -14.59081 -14.29040 -13.93437 -13.75811 -13.46569 -13.26437 -12.90528 -12.72880 -12.36179 -12.28288 -12.22251 -11.92758 -11.46301 -11.38035 -11.30911 -11.05669 -10.94247 -10.87083 -10.50278 -10.37564 -10.18167 -10.15467 -10.03889 -9.71540 -9.67077 -9.43960 -8.95799 -8.88995 -7.02208 -5.83106 -3.12088 2.43349 3.18765 3.39855 3.45933 3.47987 3.73516 4.35845 4.53810 4.58094 4.65934 4.82983 4.96468 5.05899 5.08713 5.13278 5.22047 5.23601 5.40482 5.43530 5.51679 5.53749 5.62151 5.68498 5.72210 5.75034 5.81362 5.86468 5.87061 5.95932 6.04550 6.10092 6.20176 6.24523 6.35790 6.36402 6.49234 6.59223 6.73125 6.89206 7.02896 7.56578 7.67503 8.27352 8.36136 9.46896 10.04469 10.38658 11.39420 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030774 B = 0.002838 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.635512 B = 9862.406892 C = 9904.855259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.111 4.111 5 H 0.110 0.890 6 C -0.145 4.145 7 C -0.194 4.194 8 H 0.118 0.882 9 C 0.543 3.457 10 O -0.544 6.544 11 N -0.722 5.722 12 C 0.132 3.868 13 C -0.120 4.120 14 H 0.092 0.908 15 C -0.168 4.168 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.148 4.148 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.773 16.698 -4.062 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.129 4.129 5 H 0.128 0.872 6 C -0.182 4.182 7 C -0.216 4.216 8 H 0.136 0.864 9 C 0.330 3.670 10 O -0.422 6.422 11 N -0.372 5.372 12 C 0.009 3.991 13 C -0.138 4.138 14 H 0.111 0.889 15 C -0.209 4.209 16 C 0.055 3.945 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.188 4.188 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.674 16.852 -4.843 22.235 hybrid contribution -0.679 -0.654 1.239 1.556 sum 12.995 16.198 -3.605 21.077 Atomic orbital electron populations 1.21870 0.95024 1.02477 1.00915 1.20774 0.95918 0.95269 0.96894 1.21818 1.00795 0.95899 1.01549 1.22424 1.01458 0.88663 1.00395 0.87188 1.23082 0.89864 1.01718 1.03585 1.22323 0.99536 1.00133 0.99562 0.86388 1.19495 0.79823 0.78598 0.89045 1.90663 1.69059 1.62167 1.20331 1.46022 1.36526 1.43373 1.11291 1.21454 0.92481 0.95448 0.89706 1.22706 0.94143 0.97463 0.99511 0.88944 1.23909 0.96419 0.99194 1.01397 1.21090 0.94634 0.88699 0.90062 0.91980 1.42182 1.09150 1.36477 1.46641 1.19338 0.87240 1.13071 1.17587 0.90936 1.24768 0.97424 0.98683 1.00071 1.69670 1.28200 1.24033 1.36166 0.86100 0.83385 0.77768 0.78826 1.20483 1.21813 1.21845 1.23437 0.98071 0.99989 0.97256 0.93350 0.92954 0.92036 0.89185 0.92786 0.92696 0.92958 0.88076 0.87758 0.76371 0.91952 0.91693 0.91535 0.91449 0.78121 0.93484 0.90496 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.70 37.15 0.32 -1.28 16 2 C -0.07 -0.71 2.28 -90.62 -0.21 -0.91 16 3 C -0.14 -1.16 9.18 37.16 0.34 -0.82 16 4 C -0.11 -0.99 5.12 -90.62 -0.46 -1.46 16 5 H 0.11 0.82 8.13 -51.93 -0.42 0.40 16 6 C -0.15 -1.27 9.71 -26.73 -0.26 -1.53 16 7 C -0.19 -1.91 6.10 -91.77 -0.56 -2.47 16 8 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 9 C 0.54 6.88 5.45 -10.99 -0.06 6.82 16 10 O -0.54 -8.37 13.12 5.55 0.07 -8.30 16 11 N -0.72 -8.79 5.56 -60.30 -0.33 -9.12 16 12 C 0.13 1.77 5.50 -4.04 -0.02 1.74 16 13 C -0.12 -1.77 3.63 -89.80 -0.33 -2.10 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 15 C -0.17 -2.77 7.44 -25.82 -0.19 -2.96 16 16 C 0.17 3.24 4.57 -67.02 -0.31 2.93 16 17 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 18 N -0.71 -17.27 5.31 -52.54 -0.28 -17.55 16 19 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.80 5.03 -51.93 -0.26 0.54 16 31 H 0.09 1.10 6.45 -51.93 -0.34 0.77 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 37 H 0.40 4.32 8.47 -40.82 -0.35 3.97 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.90 7.88 -51.92 -0.41 0.49 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.01 7.92 -51.93 -0.41 0.59 16 42 H 0.38 9.95 7.90 -40.82 -0.32 9.63 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -30.42 360.04 -9.54 -39.96 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.96 Total: 11.28 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.17 Total: -11.79 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.11 Total: -53.64 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.42 -9.54 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086518287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.653 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds