Wall clock time and date at job start Tue Mar 31 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47601 * 2 1 4 4 C 1.53006 * 109.46996 * 119.99700 * 2 1 3 5 5 H 1.09004 * 115.54814 * 276.37954 * 4 2 1 6 6 C 1.52998 * 117.51856 * 130.67024 * 4 2 1 7 7 C 1.52998 * 60.00175 * 252.52098 * 6 4 2 8 8 H 1.09007 * 117.52350 * 252.51932 * 7 6 4 9 9 C 1.50699 * 117.50038 * 107.49255 * 7 6 4 10 10 O 1.21283 * 119.99776 * 329.23926 * 9 7 6 11 11 N 1.34775 * 120.00532 * 149.24730 * 9 7 6 12 12 C 1.46497 * 120.00274 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47117 * 179.97438 * 12 11 9 14 14 H 1.08996 * 112.85215 * 314.66546 * 13 12 11 15 15 C 1.53786 * 113.61477 * 85.85895 * 13 12 11 16 16 C 1.53959 * 87.02044 * 139.94918 * 15 13 12 17 17 H 1.08999 * 113.66795 * 220.06716 * 16 15 13 18 18 N 1.46501 * 113.61042 * 89.19649 * 16 15 13 19 19 C 1.36940 * 119.99599 * 107.47026 * 18 16 15 20 20 H 1.07997 * 120.00132 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99748 * 180.02562 * 19 18 16 22 22 N 1.31613 * 120.00029 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47508 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47619 * 119.99486 * 23 21 19 26 26 H 1.48503 * 109.47115 * 239.99506 * 23 21 19 27 27 C 1.53782 * 87.11117 * 334.63843 * 16 15 13 28 28 H 1.09005 * 109.47156 * 294.02743 * 1 2 3 29 29 H 1.09003 * 109.47117 * 54.02250 * 1 2 3 30 30 H 1.08995 * 109.47897 * 174.02155 * 1 2 3 31 31 H 1.09000 * 109.47515 * 239.99422 * 2 1 3 32 32 H 1.09002 * 109.47081 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46753 * 299.99729 * 3 2 1 34 34 H 1.09001 * 109.47276 * 59.99745 * 3 2 1 35 35 H 1.09003 * 117.49768 * 145.03260 * 6 4 2 36 36 H 1.08997 * 117.50175 * 0.02562 * 6 4 2 37 37 H 0.97005 * 119.99359 * 359.97438 * 11 9 7 38 38 H 1.08991 * 109.47335 * 59.98963 * 12 11 9 39 39 H 1.09011 * 109.46741 * 299.99243 * 12 11 9 40 40 H 1.09002 * 113.61585 * 254.53138 * 15 13 12 41 41 H 1.09004 * 113.61311 * 25.43444 * 15 13 12 42 42 H 0.96997 * 120.00305 * 287.47489 * 18 16 15 43 43 H 0.97006 * 119.99946 * 180.02562 * 22 21 19 44 44 H 1.08995 * 113.61199 * 270.80983 * 27 16 15 45 45 H 1.08995 * 113.69012 * 139.91449 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.0936 -0.1146 2.1534 6 6 3.1093 -1.7984 1.0568 7 6 1.6755 -2.1984 1.4105 8 1 1.4890 -2.5636 2.4205 9 6 0.8422 -2.8319 0.3263 10 8 1.0279 -2.5325 -0.8342 11 7 -0.1094 -3.7310 0.6463 12 6 -0.9191 -4.3472 -0.4077 13 6 -1.9163 -5.3231 0.2200 14 1 -1.4626 -5.9644 0.9755 15 6 -3.2230 -4.6565 0.6819 16 6 -3.9539 -5.8985 0.1401 17 1 -4.8883 -5.6678 -0.3716 18 7 -4.0954 -6.9728 1.1261 19 6 -5.3198 -7.2377 1.6790 20 1 -6.1811 -6.6544 1.3885 21 6 -5.4538 -8.2552 2.6137 22 7 -4.4041 -8.9657 2.9680 23 14 -7.1242 -8.6171 3.3674 24 1 -8.1336 -7.6841 2.8053 25 1 -7.5151 -10.0156 3.0567 26 1 -7.0519 -8.4388 4.8399 27 6 -2.7612 -6.0891 -0.8117 28 1 -0.3634 0.4185 0.9387 29 1 -0.3633 0.6037 -0.8317 30 1 -0.3635 -1.0220 -0.1070 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4423 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 3.8665 -1.9004 1.8341 36 1 3.4500 -1.9932 0.0399 37 1 -0.2577 -3.9707 1.5745 38 1 -0.2691 -4.8858 -1.0972 39 1 -1.4609 -3.5720 -0.9497 40 1 -3.2965 -4.5426 1.7634 41 1 -3.4603 -3.7400 0.1416 42 1 -3.3217 -7.4963 1.3873 43 1 -4.4977 -9.6770 3.6209 44 1 -2.8720 -5.5651 -1.7610 45 1 -2.4614 -7.1298 -0.9352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086518287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:19 Heat of formation + Delta-G solvation = -16.584872 kcal Electronic energy + Delta-G solvation = -21891.828553 eV Core-core repulsion = 18716.586742 eV Total energy + Delta-G solvation = -3175.241811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36993 -40.10286 -38.08497 -35.91482 -34.92270 -34.26340 -32.08341 -29.09147 -27.99570 -26.45128 -25.95018 -24.79406 -23.79517 -22.88115 -21.45564 -20.74123 -19.71572 -19.30600 -17.89692 -17.17136 -16.73530 -16.61988 -15.94370 -15.80682 -15.73186 -15.18732 -14.94523 -14.61207 -14.53317 -14.18542 -13.83666 -13.52797 -13.26595 -13.05925 -13.02803 -12.94917 -12.91676 -12.65221 -12.14173 -12.12968 -12.07498 -12.04623 -11.75515 -11.51953 -11.47606 -11.12259 -10.97569 -10.90780 -10.86997 -10.57655 -9.99243 -9.00801 -7.96243 -5.24530 1.47826 1.48104 1.51903 1.58251 2.23529 2.55167 2.97377 3.36526 3.61021 3.70624 3.76511 3.79663 3.90166 3.95175 4.08673 4.15511 4.24196 4.31856 4.39867 4.42971 4.48701 4.69129 4.72352 4.75974 4.81073 4.90333 4.91403 4.93452 4.98158 5.03444 5.07253 5.11028 5.21428 5.28995 5.31956 5.34654 5.42926 5.50660 5.56572 5.63160 5.65948 6.27663 6.60904 7.30921 7.32627 8.09464 8.31944 9.27269 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030774 B = 0.002838 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.635512 B = 9862.406892 C = 9904.855259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.107 4.107 5 H 0.134 0.866 6 C -0.138 4.138 7 C -0.204 4.204 8 H 0.139 0.861 9 C 0.539 3.461 10 O -0.575 6.575 11 N -0.720 5.720 12 C 0.143 3.857 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.152 4.152 16 C 0.144 3.856 17 H 0.059 0.941 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.972 3.028 24 H -0.266 1.266 25 H -0.294 1.294 26 H -0.293 1.293 27 C -0.135 4.135 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.410 0.590 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.104 0.896 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.167 18.392 -3.657 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.196 4.196 4 C -0.125 4.125 5 H 0.151 0.849 6 C -0.176 4.176 7 C -0.225 4.225 8 H 0.157 0.843 9 C 0.328 3.672 10 O -0.456 6.456 11 N -0.370 5.370 12 C 0.020 3.980 13 C -0.120 4.120 14 H 0.099 0.901 15 C -0.193 4.193 16 C 0.034 3.966 17 H 0.078 0.922 18 N -0.358 5.358 19 C -0.373 4.373 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.802 3.198 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.174 4.174 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.245 0.755 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.122 0.878 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.061 18.589 -4.461 23.731 hybrid contribution -0.796 -1.120 1.013 1.707 sum 13.265 17.469 -3.447 22.204 Atomic orbital electron populations 1.21841 0.95815 1.01044 1.01376 1.20723 0.95239 0.96473 0.96491 1.21775 1.01281 0.94466 1.02067 1.22532 1.01067 0.88301 1.00620 0.84872 1.23142 0.89868 1.01038 1.03504 1.22397 0.99820 1.00810 0.99455 0.84282 1.20005 0.79679 0.78159 0.89346 1.90653 1.69950 1.63134 1.21873 1.45988 1.36358 1.43259 1.11425 1.21225 0.92107 0.94920 0.89782 1.22481 0.93826 0.97052 0.98684 0.90116 1.23720 0.96422 0.98699 1.00418 1.21414 0.96055 0.88788 0.90313 0.92248 1.42311 1.07921 1.37827 1.47743 1.19702 0.88355 1.12363 1.16846 0.90573 1.25550 1.00762 0.99191 1.01288 1.69815 1.30136 1.24853 1.37174 0.85087 0.79757 0.77368 0.77632 1.19058 1.22144 1.22056 1.23343 0.96096 1.00016 0.97986 0.92275 0.93168 0.94221 0.91880 0.91981 0.92857 0.91774 0.85473 0.89475 0.75474 0.92262 0.91763 0.93286 0.89227 0.79354 0.94009 0.87775 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.70 71.98 0.63 -2.40 16 2 C -0.07 -1.35 2.28 -10.80 -0.02 -1.37 16 3 C -0.14 -1.98 9.18 71.98 0.66 -1.32 16 4 C -0.11 -1.67 5.12 -10.79 -0.06 -1.73 16 5 H 0.13 1.51 8.13 -2.38 -0.02 1.49 16 6 C -0.14 -2.14 9.71 30.59 0.30 -1.84 16 7 C -0.20 -3.61 6.10 -11.54 -0.07 -3.68 16 8 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 9 C 0.54 13.20 5.45 87.66 0.48 13.68 16 10 O -0.58 -17.69 13.12 -3.04 -0.04 -17.73 16 11 N -0.72 -16.75 5.56 -463.07 -2.57 -19.32 16 12 C 0.14 3.66 5.50 86.38 0.47 4.13 16 13 C -0.10 -2.91 3.63 -10.26 -0.04 -2.95 16 14 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 15 C -0.15 -4.84 7.44 31.18 0.23 -4.60 16 16 C 0.14 5.50 4.57 45.58 0.21 5.71 16 17 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 18 N -0.72 -35.54 5.31 -320.15 -1.70 -37.24 16 19 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 20 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 22 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 23 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.04 1.00 5.03 -2.39 -0.01 0.99 16 31 H 0.06 1.55 6.45 -2.39 -0.02 1.54 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.68 7.91 -2.39 -0.02 1.66 16 37 H 0.41 8.27 8.47 -92.70 -0.79 7.49 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.68 7.88 -2.38 -0.02 1.66 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.09 2.48 7.92 -2.39 -0.02 2.46 16 42 H 0.37 19.78 7.90 -92.71 -0.73 19.05 16 43 H 0.25 14.70 8.31 -92.70 -0.77 13.92 16 44 H 0.10 2.66 8.10 -2.39 -0.02 2.64 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.03 360.04 1.77 -64.26 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.55 Total: 37.11 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.32 Total: -16.49 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.99 Total: -114.83 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.04 Total: -17.73 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -66.03 1.77 -64.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086518287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.671 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds