Wall clock time and date at job start Tue Mar 31 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47151 * 2 1 4 4 H 1.09004 * 115.55378 * 29.33055 * 3 2 1 5 5 C 1.53008 * 117.51901 * 243.62614 * 3 2 1 6 6 C 1.52999 * 59.99915 * 252.52012 * 5 3 2 7 7 H 1.09004 * 117.51940 * 107.48446 * 6 5 3 8 8 C 1.50711 * 117.49520 * 252.50788 * 6 5 3 9 9 O 1.21278 * 119.99616 * 68.62483 * 8 6 5 10 10 N 1.34775 * 119.99929 * 248.62004 * 8 6 5 11 11 C 1.46491 * 119.99948 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47323 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.01464 * 305.70159 * 12 11 10 14 14 C 1.53876 * 110.03202 * 67.09363 * 12 11 10 15 15 C 1.54264 * 106.60102 * 119.33660 * 14 12 11 16 16 C 1.54894 * 104.19615 * 23.60756 * 15 14 12 17 17 H 1.08995 * 110.75201 * 80.55837 * 16 15 14 18 18 N 1.46500 * 110.75652 * 203.74600 * 16 15 14 19 19 C 1.36934 * 119.99656 * 273.54668 * 18 16 15 20 20 H 1.07995 * 120.00606 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99683 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99929 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47105 * 60.00017 * 23 21 19 25 25 H 1.48498 * 109.46986 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46998 * 299.99917 * 23 21 19 27 27 C 1.54263 * 110.03396 * 184.30740 * 12 11 10 28 28 H 1.09003 * 109.47099 * 60.00204 * 1 2 3 29 29 H 1.08998 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47387 * 300.00113 * 1 2 3 31 31 H 1.08998 * 109.47387 * 239.99887 * 2 1 3 32 32 H 1.09003 * 109.47099 * 119.99796 * 2 1 3 33 33 H 1.08997 * 117.49952 * 145.02731 * 5 3 2 34 34 H 1.08997 * 117.49270 * 0.02562 * 5 3 2 35 35 H 0.96999 * 120.00041 * 0.02562 * 10 8 6 36 36 H 1.09001 * 109.47239 * 60.00497 * 11 10 8 37 37 H 1.09000 * 109.47336 * 300.00361 * 11 10 8 38 38 H 1.09002 * 110.03233 * 238.62459 * 14 12 11 39 39 H 1.09001 * 110.03366 * 0.02562 * 14 12 11 40 40 H 1.08995 * 110.48853 * 142.29018 * 15 14 12 41 41 H 1.09005 * 110.48374 * 264.93080 * 15 14 12 42 42 H 0.97003 * 119.99805 * 93.54476 * 18 16 15 43 43 H 0.97005 * 119.99863 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.48639 * 335.74057 * 27 12 11 45 45 H 1.09002 * 110.48477 * 98.37879 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9080 -1.2157 6 6 3.5501 1.6578 0.1183 7 1 4.1803 0.7718 0.1961 8 6 4.0228 2.8618 0.8919 9 8 3.2157 3.6162 1.3922 10 7 5.3424 3.0999 1.0277 11 6 5.8019 4.2698 1.7801 12 6 7.3315 4.3067 1.7817 13 1 7.7271 3.3619 2.1543 14 6 7.8538 4.5724 0.3589 15 6 8.6536 5.8900 0.4218 16 6 9.0759 6.0074 1.9075 17 1 9.9497 5.3883 2.1106 18 7 9.3372 7.4040 2.2641 19 6 10.5770 7.9447 2.0504 20 1 11.3620 7.3418 1.6186 21 6 10.8248 9.2680 2.3889 22 7 9.8679 10.0030 2.9147 23 14 12.5159 10.0059 2.0967 24 1 12.8420 9.9386 0.6495 25 1 12.5209 11.4230 2.5404 26 1 13.5291 9.2424 2.8685 27 6 7.8311 5.4721 2.6603 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7212 2.9433 -1.5338 34 1 3.0092 1.1867 -2.0159 35 1 5.9879 2.4966 0.6273 36 1 5.4386 4.2077 2.8059 37 1 5.4174 5.1764 1.3128 38 1 8.5028 3.7564 0.0409 39 1 7.0175 4.6755 -0.3327 40 1 9.5319 5.8342 -0.2212 41 1 8.0237 6.7326 0.1366 42 1 8.6320 7.9457 2.6516 43 1 10.0412 10.9276 3.1516 44 1 7.0682 6.2469 2.7362 45 1 8.1093 5.1112 3.6505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086807031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:50 Heat of formation + Delta-G solvation = -31.219294 kcal Electronic energy + Delta-G solvation = -21343.442807 eV Core-core repulsion = 18167.566401 eV Total energy + Delta-G solvation = -3175.876407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.20261 -38.38207 -37.18312 -34.87992 -33.35296 -32.38715 -30.73993 -29.07768 -27.39601 -25.32344 -24.17581 -23.32473 -22.95286 -20.89334 -20.38386 -19.59702 -19.30603 -17.46955 -17.04874 -16.20109 -15.72427 -15.24775 -14.96159 -14.83281 -14.56814 -14.22667 -13.80920 -13.36324 -13.00693 -12.87216 -12.75990 -12.62035 -12.45445 -12.16188 -11.85613 -11.67419 -11.37966 -11.12518 -10.87646 -10.77388 -10.59984 -10.58278 -10.55317 -10.36858 -10.27155 -10.15957 -9.97594 -9.76162 -9.63490 -9.10389 -8.85938 -6.93117 -5.75191 -3.03835 2.38007 3.01850 3.44480 3.48791 3.50010 3.54747 4.29778 4.44344 4.49913 4.59761 4.77554 4.83820 4.89755 4.94373 4.97931 5.06239 5.09967 5.32999 5.44110 5.53352 5.55099 5.57563 5.64056 5.70457 5.73672 5.75146 5.79753 5.89912 5.97205 6.03322 6.04833 6.07732 6.22888 6.33772 6.40385 6.47442 6.57782 6.72908 6.87738 7.12843 7.42443 7.71111 8.14880 8.43741 9.54396 10.13481 10.47593 11.47405 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.053737 B = 0.002401 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.926871 B =11659.136277 C =11807.214207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.192 4.192 7 H 0.122 0.878 8 C 0.539 3.461 9 O -0.543 6.543 10 N -0.723 5.723 11 C 0.126 3.874 12 C -0.100 4.100 13 H 0.073 0.927 14 C -0.120 4.120 15 C -0.143 4.143 16 C 0.177 3.823 17 H 0.052 0.948 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.122 4.122 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.981 -21.798 -7.270 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.213 4.213 7 H 0.140 0.860 8 C 0.325 3.675 9 O -0.420 6.420 10 N -0.374 5.374 11 C 0.003 3.997 12 C -0.119 4.119 13 H 0.092 0.908 14 C -0.158 4.158 15 C -0.184 4.184 16 C 0.066 3.934 17 H 0.070 0.930 18 N -0.361 5.361 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.364 -21.163 -6.909 26.494 hybrid contribution 1.185 0.383 -0.262 1.273 sum -13.179 -20.780 -7.171 25.630 Atomic orbital electron populations 1.21741 0.95144 1.01630 1.02231 1.21154 0.96332 0.93624 1.02103 1.22485 0.91401 0.98713 1.01135 0.86408 1.23105 1.01989 1.03246 0.90269 1.22318 0.97762 0.99004 1.02205 0.86000 1.19664 0.82363 0.85568 0.79912 1.90705 1.53984 1.48701 1.48606 1.45994 1.06807 1.28866 1.55687 1.21575 0.94206 0.87827 0.96115 1.21957 0.92906 0.99863 0.97220 0.90847 1.22208 0.99386 0.98909 0.95303 1.23071 0.98913 0.95479 1.00966 1.21181 0.93918 0.87336 0.90921 0.92955 1.42382 1.12253 1.06814 1.74670 1.19200 0.89133 0.94321 1.34413 0.91263 1.24755 0.97729 0.96770 1.01796 1.69652 1.31767 1.08205 1.48507 0.86272 0.83951 0.78204 0.77779 1.21308 1.21709 1.21300 1.22591 0.99019 0.96410 0.98034 0.92492 0.92630 0.92447 0.91674 0.91429 0.88235 0.87815 0.76550 0.91558 0.91187 0.92456 0.92406 0.92610 0.91825 0.78188 0.93462 0.91183 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.87 37.16 0.37 -0.52 16 2 C -0.09 -0.60 6.22 -26.74 -0.17 -0.76 16 3 C -0.12 -0.99 5.25 -90.62 -0.48 -1.47 16 4 H 0.12 1.22 7.60 -51.93 -0.39 0.83 16 5 C -0.15 -1.13 9.88 -26.73 -0.26 -1.40 16 6 C -0.19 -1.65 5.91 -91.77 -0.54 -2.20 16 7 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.54 6.57 7.61 -10.98 -0.08 6.49 16 9 O -0.54 -8.92 16.26 5.56 0.09 -8.82 16 10 N -0.72 -7.73 5.32 -60.30 -0.32 -8.05 16 11 C 0.13 1.59 4.69 -4.05 -0.02 1.58 16 12 C -0.10 -1.26 2.97 -89.50 -0.27 -1.52 16 13 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.12 -1.57 6.15 -25.61 -0.16 -1.72 16 15 C -0.14 -2.50 6.51 -25.07 -0.16 -2.67 16 16 C 0.18 3.46 3.54 -65.87 -0.23 3.23 16 17 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 18 N -0.72 -18.12 5.25 -51.44 -0.27 -18.39 16 19 C -0.24 -6.66 9.98 -15.06 -0.15 -6.81 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C -0.12 -1.95 5.97 -25.01 -0.15 -2.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 7.88 -51.93 -0.41 -0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 35 H 0.40 3.21 8.33 -40.82 -0.34 2.87 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.38 10.29 7.72 -40.82 -0.32 9.97 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -32.27 365.81 -9.82 -42.09 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -8.14 Total: 8.25 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.40 Total: -10.39 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.13 Total: -54.10 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.27 -9.82 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086807031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.876 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds