Wall clock time and date at job start Tue Mar 31 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47151 * 2 1 4 4 H 1.09004 * 115.55378 * 29.33055 * 3 2 1 5 5 C 1.53008 * 117.51901 * 243.62614 * 3 2 1 6 6 C 1.52999 * 59.99915 * 252.52012 * 5 3 2 7 7 H 1.09004 * 117.51940 * 107.48446 * 6 5 3 8 8 C 1.50711 * 117.49520 * 252.50788 * 6 5 3 9 9 O 1.21278 * 119.99616 * 68.62483 * 8 6 5 10 10 N 1.34775 * 119.99929 * 248.62004 * 8 6 5 11 11 C 1.46491 * 119.99948 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47323 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.01464 * 305.70159 * 12 11 10 14 14 C 1.53876 * 110.03202 * 67.09363 * 12 11 10 15 15 C 1.54264 * 106.60102 * 119.33660 * 14 12 11 16 16 C 1.54894 * 104.19615 * 23.60756 * 15 14 12 17 17 H 1.08995 * 110.75201 * 80.55837 * 16 15 14 18 18 N 1.46500 * 110.75652 * 203.74600 * 16 15 14 19 19 C 1.36934 * 119.99656 * 273.54668 * 18 16 15 20 20 H 1.07995 * 120.00606 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99683 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99934 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99929 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47105 * 60.00017 * 23 21 19 25 25 H 1.48498 * 109.46986 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46998 * 299.99917 * 23 21 19 27 27 C 1.54263 * 110.03396 * 184.30740 * 12 11 10 28 28 H 1.09003 * 109.47099 * 60.00204 * 1 2 3 29 29 H 1.08998 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47387 * 300.00113 * 1 2 3 31 31 H 1.08998 * 109.47387 * 239.99887 * 2 1 3 32 32 H 1.09003 * 109.47099 * 119.99796 * 2 1 3 33 33 H 1.08997 * 117.49952 * 145.02731 * 5 3 2 34 34 H 1.08997 * 117.49270 * 0.02562 * 5 3 2 35 35 H 0.96999 * 120.00041 * 0.02562 * 10 8 6 36 36 H 1.09001 * 109.47239 * 60.00497 * 11 10 8 37 37 H 1.09000 * 109.47336 * 300.00361 * 11 10 8 38 38 H 1.09002 * 110.03233 * 238.62459 * 14 12 11 39 39 H 1.09001 * 110.03366 * 0.02562 * 14 12 11 40 40 H 1.08995 * 110.48853 * 142.29018 * 15 14 12 41 41 H 1.09005 * 110.48374 * 264.93080 * 15 14 12 42 42 H 0.97003 * 119.99805 * 93.54476 * 18 16 15 43 43 H 0.97005 * 119.99863 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.48639 * 335.74057 * 27 12 11 45 45 H 1.09002 * 110.48477 * 98.37879 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9080 -1.2157 6 6 3.5501 1.6578 0.1183 7 1 4.1803 0.7718 0.1961 8 6 4.0228 2.8618 0.8919 9 8 3.2157 3.6162 1.3922 10 7 5.3424 3.0999 1.0277 11 6 5.8019 4.2698 1.7801 12 6 7.3315 4.3067 1.7817 13 1 7.7271 3.3619 2.1543 14 6 7.8538 4.5724 0.3589 15 6 8.6536 5.8900 0.4218 16 6 9.0759 6.0074 1.9075 17 1 9.9497 5.3883 2.1106 18 7 9.3372 7.4040 2.2641 19 6 10.5770 7.9447 2.0504 20 1 11.3620 7.3418 1.6186 21 6 10.8248 9.2680 2.3889 22 7 9.8679 10.0030 2.9147 23 14 12.5159 10.0059 2.0967 24 1 12.8420 9.9386 0.6495 25 1 12.5209 11.4230 2.5404 26 1 13.5291 9.2424 2.8685 27 6 7.8311 5.4721 2.6603 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7212 2.9433 -1.5338 34 1 3.0092 1.1867 -2.0159 35 1 5.9879 2.4966 0.6273 36 1 5.4386 4.2077 2.8059 37 1 5.4174 5.1764 1.3128 38 1 8.5028 3.7564 0.0409 39 1 7.0175 4.6755 -0.3327 40 1 9.5319 5.8342 -0.2212 41 1 8.0237 6.7326 0.1366 42 1 8.6320 7.9457 2.6516 43 1 10.0412 10.9276 3.1516 44 1 7.0682 6.2469 2.7362 45 1 8.1093 5.1112 3.6505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086807031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:50 Heat of formation + Delta-G solvation = -51.510858 kcal Electronic energy + Delta-G solvation = -21344.322716 eV Core-core repulsion = 18167.566401 eV Total energy + Delta-G solvation = -3176.756315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13116 -39.59340 -38.01273 -36.29802 -34.97784 -32.96698 -32.51635 -30.36711 -28.88286 -26.52521 -25.12333 -24.68712 -24.02079 -21.69989 -21.30876 -20.90571 -20.47768 -19.14310 -18.26679 -17.27246 -16.79854 -16.72039 -16.08081 -15.81585 -15.48010 -15.33492 -15.18446 -14.88827 -14.31511 -14.08520 -13.62299 -13.51654 -13.41217 -13.27697 -12.97452 -12.93716 -12.67983 -12.39103 -12.19063 -12.14840 -11.98095 -11.91417 -11.78766 -11.65461 -11.54397 -11.26909 -11.22735 -11.02848 -10.88645 -10.74555 -10.10327 -8.98448 -7.93937 -5.22340 1.46328 1.48257 1.49633 1.55712 2.13735 2.56631 2.87466 3.37905 3.60194 3.69197 3.78152 3.78516 3.80136 3.89990 4.20557 4.29080 4.29934 4.38632 4.47478 4.50185 4.58683 4.61486 4.63917 4.78151 4.78765 4.79880 4.88473 4.96638 5.01707 5.08086 5.11893 5.16828 5.19588 5.24022 5.31058 5.36644 5.45989 5.49518 5.51299 5.55387 5.63656 6.28576 6.57470 7.25968 7.33586 8.12373 8.33956 9.29618 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.053737 B = 0.002401 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.926871 B =11659.136277 C =11807.214207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.127 4.127 4 H 0.088 0.912 5 C -0.138 4.138 6 C -0.190 4.190 7 H 0.155 0.845 8 C 0.532 3.468 9 O -0.594 6.594 10 N -0.708 5.708 11 C 0.133 3.867 12 C -0.082 4.082 13 H 0.105 0.895 14 C -0.107 4.107 15 C -0.139 4.139 16 C 0.164 3.836 17 H 0.055 0.945 18 N -0.737 5.737 19 C -0.239 4.239 20 H 0.077 0.923 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.276 1.276 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.418 0.582 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.036 0.964 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.052 0.948 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 -25.071 -8.699 29.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.146 4.146 4 H 0.106 0.894 5 C -0.175 4.175 6 C -0.211 4.211 7 H 0.172 0.828 8 C 0.320 3.680 9 O -0.475 6.475 10 N -0.360 5.360 11 C 0.009 3.991 12 C -0.102 4.102 13 H 0.123 0.877 14 C -0.145 4.145 15 C -0.180 4.180 16 C 0.056 3.944 17 H 0.073 0.927 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.803 3.197 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.202 1.202 27 C -0.156 4.156 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.468 -24.519 -8.377 29.202 hybrid contribution 0.873 1.374 0.180 1.638 sum -12.595 -23.144 -8.196 27.595 Atomic orbital electron populations 1.21756 0.95244 1.02241 1.01668 1.21150 0.96234 0.92090 1.03127 1.22485 0.90972 0.99493 1.01619 0.89371 1.23192 1.00669 1.03165 0.90463 1.22375 0.98216 0.98288 1.02234 0.82758 1.20362 0.82206 0.86043 0.79400 1.90687 1.55313 1.50716 1.50828 1.45830 1.06914 1.28267 1.54965 1.21327 0.94194 0.87849 0.95760 1.21822 0.92517 0.99592 0.96224 0.87710 1.22134 0.99478 0.97127 0.95712 1.22904 0.98944 0.97227 0.98910 1.21496 0.95509 0.84629 0.92801 0.92747 1.42621 1.11150 1.08949 1.74886 1.19618 0.90175 0.94510 1.32754 0.90517 1.25603 1.01478 0.97517 1.02709 1.69825 1.33833 1.08132 1.50533 0.85203 0.79741 0.76848 0.77937 1.20421 1.22381 1.20235 1.22501 0.97011 0.97250 0.98802 0.92555 0.91374 0.93617 0.89760 0.91153 0.89850 0.84826 0.74456 0.92388 0.93557 0.89337 0.91607 0.93029 0.94479 0.79781 0.94144 0.92926 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.87 71.98 0.71 -0.88 16 2 C -0.09 -0.91 6.22 30.59 0.19 -0.72 16 3 C -0.13 -1.97 5.25 -10.79 -0.06 -2.02 16 4 H 0.09 1.91 7.60 -2.39 -0.02 1.89 16 5 C -0.14 -1.78 9.88 30.60 0.30 -1.48 16 6 C -0.19 -2.82 5.91 -11.54 -0.07 -2.89 16 7 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 8 C 0.53 12.40 7.61 87.66 0.67 13.07 16 9 O -0.59 -19.99 16.26 -3.02 -0.05 -20.04 16 10 N -0.71 -13.55 5.32 -463.07 -2.46 -16.01 16 11 C 0.13 3.22 4.69 86.38 0.41 3.62 16 12 C -0.08 -1.87 2.97 -10.07 -0.03 -1.89 16 13 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.11 -2.47 6.15 31.32 0.19 -2.28 16 15 C -0.14 -4.75 6.51 31.67 0.21 -4.55 16 16 C 0.16 6.35 3.54 46.33 0.16 6.51 16 17 H 0.05 2.09 8.12 -2.39 -0.02 2.07 16 18 N -0.74 -37.80 5.25 -316.65 -1.66 -39.46 16 19 C -0.24 -13.39 9.98 84.03 0.84 -12.55 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 22 N -0.97 -60.82 13.06 21.65 0.28 -60.53 16 23 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 C -0.12 -3.66 5.97 31.71 0.19 -3.48 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.57 7.88 -2.39 -0.02 0.55 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.13 0.95 8.03 -2.39 -0.02 0.93 16 35 H 0.42 5.04 8.33 -92.71 -0.77 4.27 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.47 7.60 -2.39 -0.02 1.45 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.37 20.65 7.72 -92.71 -0.72 19.93 16 43 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 44 H 0.05 1.83 7.73 -2.39 -0.02 1.82 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -72.86 365.81 1.79 -71.07 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.53 Total: 30.10 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.18 Total: -13.81 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.84 Total: -116.01 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -72.86 1.79 -71.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086807031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.564 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds