Wall clock time and date at job start Tue Mar 31 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47311 * 2 1 4 4 H 1.09001 * 109.87382 * 302.60332 * 3 2 1 5 5 C 1.54324 * 109.88292 * 181.43007 * 3 2 1 6 6 H 1.09008 * 110.71896 * 336.75399 * 5 3 2 7 7 N 1.46502 * 110.72156 * 100.02215 * 5 3 2 8 8 C 1.34777 * 120.00312 * 205.00276 * 7 5 3 9 9 O 1.21285 * 119.99832 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99980 * 180.02562 * 8 7 5 11 11 C 1.53785 * 113.60953 * 277.49592 * 10 8 7 12 12 C 1.53785 * 87.07808 * 220.01795 * 11 10 8 13 13 C 1.53001 * 113.61296 * 139.97978 * 12 11 10 14 14 C 1.53781 * 113.61166 * 180.02562 * 10 8 7 15 15 C 1.55155 * 102.94243 * 218.38730 * 5 3 2 16 16 C 1.54692 * 101.67844 * 35.33612 * 15 5 3 17 17 N 1.47021 * 109.88653 * 63.62284 * 3 2 1 18 18 C 1.36936 * 125.64582 * 298.32300 * 17 3 2 19 19 H 1.08003 * 120.00031 * 336.17583 * 18 17 3 20 20 C 1.38815 * 120.00267 * 156.17440 * 18 17 3 21 21 N 1.31615 * 120.00515 * 160.43322 * 20 18 17 22 22 Si 1.86801 * 119.99602 * 340.43509 * 20 18 17 23 23 H 1.48500 * 109.47240 * 89.63791 * 22 20 18 24 24 H 1.48499 * 109.47277 * 329.63834 * 22 20 18 25 25 H 1.48499 * 109.46919 * 209.63944 * 22 20 18 26 26 H 1.08997 * 109.47585 * 172.66881 * 1 2 3 27 27 H 1.09003 * 109.47529 * 292.67742 * 1 2 3 28 28 H 1.09004 * 109.46713 * 52.67141 * 1 2 3 29 29 H 1.08996 * 109.47101 * 239.99210 * 2 1 3 30 30 H 1.09005 * 109.46464 * 119.99956 * 2 1 3 31 31 H 0.97003 * 119.99778 * 25.00417 * 7 5 3 32 32 H 1.08993 * 112.84989 * 48.80001 * 10 8 7 33 33 H 1.08997 * 113.61571 * 334.56300 * 11 10 8 34 34 H 1.08991 * 113.61315 * 105.47537 * 11 10 8 35 35 H 1.08996 * 113.69152 * 270.87275 * 12 11 10 36 36 H 1.09000 * 109.47485 * 322.50366 * 13 12 11 37 37 H 1.09002 * 109.46906 * 82.50286 * 13 12 11 38 38 H 1.09001 * 109.47271 * 202.50798 * 13 12 11 39 39 H 1.08999 * 113.60967 * 254.52655 * 14 10 8 40 40 H 1.08996 * 113.61402 * 25.42608 * 14 10 8 41 41 H 1.09006 * 111.00201 * 153.57701 * 15 5 3 42 42 H 1.08996 * 111.00381 * 277.38902 * 15 5 3 43 43 H 1.08994 * 110.39264 * 204.36084 * 16 15 5 44 44 H 1.08999 * 110.23326 * 82.10980 * 16 15 5 45 45 H 0.96994 * 120.00382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6428 1.9759 -0.8636 5 6 3.5828 1.4536 -0.0362 6 1 3.9844 0.5163 0.3491 7 7 4.0676 1.7071 -1.3953 8 6 5.2902 1.2776 -1.7658 9 8 5.9893 0.6817 -0.9738 10 6 5.7890 1.5388 -3.1636 11 6 5.2817 0.5210 -4.1989 12 6 6.6895 0.5658 -4.8162 13 6 7.2036 -0.8021 -5.2696 14 6 7.1993 0.9856 -3.4278 15 6 3.9439 2.6335 0.9044 16 6 2.8353 2.5287 1.9781 17 7 1.6276 2.1187 1.2386 18 6 0.3357 2.3369 1.6366 19 1 -0.4572 2.3680 0.9039 20 6 0.0449 2.5180 2.9818 21 7 -1.0817 3.0967 3.3396 22 14 1.2529 1.9404 4.2844 23 1 2.2100 3.0335 4.5915 24 1 1.9970 0.7583 3.7801 25 1 0.5122 1.5701 5.5170 26 1 -0.3634 -1.0192 -0.1311 27 1 -0.3634 0.3962 0.9482 28 1 -0.3633 0.6232 -0.8172 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8901 31 1 3.5086 2.1840 -2.0285 32 1 5.6620 2.5767 -3.4712 33 1 5.0239 -0.4470 -3.7694 34 1 4.5050 0.9150 -4.8541 35 1 6.8097 1.3367 -5.5773 36 1 6.8818 -1.5646 -4.5604 37 1 6.8028 -1.0319 -6.2569 38 1 8.2926 -0.7843 -5.3147 39 1 7.9709 1.7547 -3.4604 40 1 7.4654 0.1445 -2.7876 41 1 4.9312 2.4940 1.3448 42 1 3.8846 3.5857 0.3772 43 1 2.6773 3.4951 2.4566 44 1 3.0995 1.7755 2.7204 45 1 -1.2847 3.2236 4.2795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087536474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:44 Heat of formation + Delta-G solvation = -4.625172 kcal Electronic energy + Delta-G solvation = -22916.809595 eV Core-core repulsion = 19742.086395 eV Total energy + Delta-G solvation = -3174.723199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44811 -38.75176 -37.37420 -34.15751 -32.51577 -32.12238 -30.42908 -29.24330 -27.17955 -25.86743 -25.03602 -23.66968 -22.16198 -20.93353 -20.30372 -19.68731 -19.15830 -17.07769 -16.98951 -16.10399 -15.83091 -15.09368 -14.81412 -14.62547 -13.93540 -13.73119 -13.55407 -13.27979 -13.05788 -12.78722 -12.67583 -12.46782 -12.32762 -12.17668 -11.91868 -11.47973 -11.36582 -11.10019 -11.05706 -10.91060 -10.73455 -10.64743 -10.44376 -10.38363 -10.27268 -10.06590 -9.83551 -9.55221 -9.32060 -8.78781 -8.60311 -7.01532 -5.96554 -3.30190 2.71402 3.29864 3.35817 3.48988 3.51626 4.25784 4.36068 4.51007 4.53658 4.54801 4.87802 5.06214 5.15235 5.19982 5.22674 5.28882 5.31514 5.47684 5.48443 5.54699 5.61777 5.62658 5.78458 5.81293 5.86984 5.91176 5.96507 6.01806 6.10908 6.19283 6.27522 6.34366 6.43851 6.54721 6.60967 6.64342 6.76465 6.79083 7.04281 7.36315 7.67178 7.75250 8.29725 8.36985 8.81406 9.66330 10.16829 11.18999 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031829 B = 0.004091 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.501365 B = 6843.073274 C = 7258.412935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.159 3.841 4 H 0.045 0.955 5 C 0.132 3.868 6 H 0.096 0.904 7 N -0.714 5.714 8 C 0.522 3.478 9 O -0.544 6.544 10 C -0.139 4.139 11 C -0.119 4.119 12 C -0.116 4.116 13 C -0.142 4.142 14 C -0.113 4.113 15 C -0.140 4.140 16 C 0.111 3.889 17 N -0.599 5.599 18 C -0.233 4.233 19 H 0.095 0.905 20 C 0.024 3.976 21 N -0.909 5.909 22 Si 0.881 3.119 23 H -0.287 1.287 24 H -0.271 1.271 25 H -0.303 1.303 26 H 0.030 0.970 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.400 0.600 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.437 -3.851 -16.080 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.063 0.937 5 C 0.027 3.973 6 H 0.114 0.886 7 N -0.364 5.364 8 C 0.308 3.692 9 O -0.421 6.421 10 C -0.161 4.161 11 C -0.156 4.156 12 C -0.134 4.134 13 C -0.200 4.200 14 C -0.151 4.151 15 C -0.180 4.180 16 C -0.015 4.015 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.112 0.888 20 C -0.175 4.175 21 N -0.553 5.553 22 Si 0.711 3.289 23 H -0.214 1.214 24 H -0.197 1.197 25 H -0.231 1.231 26 H 0.049 0.951 27 H 0.114 0.886 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.718 -4.212 -15.333 21.000 hybrid contribution 0.257 0.004 0.636 0.686 sum 13.975 -4.208 -14.697 20.712 Atomic orbital electron populations 1.21958 0.95252 0.99137 1.04669 1.21891 0.97354 0.97269 0.99858 1.21182 0.89792 0.92401 0.91500 0.93717 1.22100 0.94892 0.99118 0.81149 0.88642 1.46054 1.17498 1.58456 1.14419 1.20455 0.81298 0.78325 0.89149 1.90677 1.56197 1.41511 1.53763 1.22742 0.99339 1.01319 0.92660 1.22952 0.97160 0.99030 0.96508 1.22472 0.96032 0.98244 0.96701 1.21718 1.00978 0.96127 1.01130 1.22895 0.94515 1.01508 0.96171 1.23086 0.98813 0.98266 0.97795 1.21936 0.86664 0.98776 0.94100 1.44744 1.01786 1.64717 1.21302 1.18570 0.82253 1.43121 0.92101 0.88759 1.25100 0.95977 0.99530 0.96856 1.69795 1.24998 1.43724 1.16749 0.86976 0.80494 0.79824 0.81603 1.21398 1.19671 1.23075 0.95113 0.88607 0.93989 0.93945 0.92623 0.76604 0.87093 0.89552 0.90701 0.89115 0.92440 0.92679 0.92488 0.91229 0.88640 0.91415 0.91078 0.92204 0.95356 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.86 37.16 0.33 -2.58 16 2 C -0.12 -2.28 5.49 -26.73 -0.15 -2.42 16 3 C 0.16 2.98 3.03 -66.96 -0.20 2.78 16 4 H 0.05 0.82 7.72 -51.93 -0.40 0.42 16 5 C 0.13 2.24 2.85 -66.10 -0.19 2.05 16 6 H 0.10 1.77 7.26 -51.92 -0.38 1.39 16 7 N -0.71 -9.62 5.18 -52.03 -0.27 -9.89 16 8 C 0.52 7.17 7.35 -10.98 -0.08 7.09 16 9 O -0.54 -9.63 15.55 5.55 0.09 -9.54 16 10 C -0.14 -1.36 4.15 -90.96 -0.38 -1.73 16 11 C -0.12 -1.00 7.18 -25.91 -0.19 -1.18 16 12 C -0.12 -0.88 4.36 -89.82 -0.39 -1.27 16 13 C -0.14 -1.02 9.71 37.16 0.36 -0.66 16 14 C -0.11 -1.07 6.96 -25.94 -0.18 -1.25 16 15 C -0.14 -2.48 6.76 -24.70 -0.17 -2.64 16 16 C 0.11 2.39 4.76 -2.65 -0.01 2.38 16 17 N -0.60 -13.77 2.87 -162.72 -0.47 -14.24 16 18 C -0.23 -6.22 7.74 -15.06 -0.12 -6.34 16 19 H 0.09 2.66 7.22 -52.48 -0.38 2.28 16 20 C 0.02 0.69 5.45 -17.43 -0.10 0.59 16 21 N -0.91 -27.34 13.97 55.49 0.78 -26.57 16 22 Si 0.88 22.42 24.40 -169.99 -4.15 18.27 16 23 H -0.29 -7.15 6.93 56.52 0.39 -6.76 16 24 H -0.27 -6.82 6.37 56.52 0.36 -6.46 16 25 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 2.17 5.42 -51.93 -0.28 1.89 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.40 4.42 8.37 -40.82 -0.34 4.08 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 1.09 7.39 -51.93 -0.38 0.71 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.36 7.23 -51.93 -0.38 0.99 16 44 H 0.03 0.65 5.22 -51.93 -0.27 0.38 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -31.03 344.72 -8.18 -39.21 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.89 Total: 2.78 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.46 Total: -5.21 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.04 Total: -50.70 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.15 Total: 18.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.03 -8.18 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087536474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.580 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds