Wall clock time and date at job start Tue Mar 31 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47311 * 2 1 4 4 H 1.09001 * 109.87382 * 302.60332 * 3 2 1 5 5 C 1.54324 * 109.88292 * 181.43007 * 3 2 1 6 6 H 1.09008 * 110.71896 * 336.75399 * 5 3 2 7 7 N 1.46502 * 110.72156 * 100.02215 * 5 3 2 8 8 C 1.34777 * 120.00312 * 205.00276 * 7 5 3 9 9 O 1.21285 * 119.99832 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99980 * 180.02562 * 8 7 5 11 11 C 1.53785 * 113.60953 * 277.49592 * 10 8 7 12 12 C 1.53785 * 87.07808 * 220.01795 * 11 10 8 13 13 C 1.53001 * 113.61296 * 139.97978 * 12 11 10 14 14 C 1.53781 * 113.61166 * 180.02562 * 10 8 7 15 15 C 1.55155 * 102.94243 * 218.38730 * 5 3 2 16 16 C 1.54692 * 101.67844 * 35.33612 * 15 5 3 17 17 N 1.47021 * 109.88653 * 63.62284 * 3 2 1 18 18 C 1.36936 * 125.64582 * 298.32300 * 17 3 2 19 19 H 1.08003 * 120.00031 * 336.17583 * 18 17 3 20 20 C 1.38815 * 120.00267 * 156.17440 * 18 17 3 21 21 N 1.31615 * 120.00515 * 160.43322 * 20 18 17 22 22 Si 1.86801 * 119.99602 * 340.43509 * 20 18 17 23 23 H 1.48500 * 109.47240 * 89.63791 * 22 20 18 24 24 H 1.48499 * 109.47277 * 329.63834 * 22 20 18 25 25 H 1.48499 * 109.46919 * 209.63944 * 22 20 18 26 26 H 1.08997 * 109.47585 * 172.66881 * 1 2 3 27 27 H 1.09003 * 109.47529 * 292.67742 * 1 2 3 28 28 H 1.09004 * 109.46713 * 52.67141 * 1 2 3 29 29 H 1.08996 * 109.47101 * 239.99210 * 2 1 3 30 30 H 1.09005 * 109.46464 * 119.99956 * 2 1 3 31 31 H 0.97003 * 119.99778 * 25.00417 * 7 5 3 32 32 H 1.08993 * 112.84989 * 48.80001 * 10 8 7 33 33 H 1.08997 * 113.61571 * 334.56300 * 11 10 8 34 34 H 1.08991 * 113.61315 * 105.47537 * 11 10 8 35 35 H 1.08996 * 113.69152 * 270.87275 * 12 11 10 36 36 H 1.09000 * 109.47485 * 322.50366 * 13 12 11 37 37 H 1.09002 * 109.46906 * 82.50286 * 13 12 11 38 38 H 1.09001 * 109.47271 * 202.50798 * 13 12 11 39 39 H 1.08999 * 113.60967 * 254.52655 * 14 10 8 40 40 H 1.08996 * 113.61402 * 25.42608 * 14 10 8 41 41 H 1.09006 * 111.00201 * 153.57701 * 15 5 3 42 42 H 1.08996 * 111.00381 * 277.38902 * 15 5 3 43 43 H 1.08994 * 110.39264 * 204.36084 * 16 15 5 44 44 H 1.08999 * 110.23326 * 82.10980 * 16 15 5 45 45 H 0.96994 * 120.00382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6428 1.9759 -0.8636 5 6 3.5828 1.4536 -0.0362 6 1 3.9844 0.5163 0.3491 7 7 4.0676 1.7071 -1.3953 8 6 5.2902 1.2776 -1.7658 9 8 5.9893 0.6817 -0.9738 10 6 5.7890 1.5388 -3.1636 11 6 5.2817 0.5210 -4.1989 12 6 6.6895 0.5658 -4.8162 13 6 7.2036 -0.8021 -5.2696 14 6 7.1993 0.9856 -3.4278 15 6 3.9439 2.6335 0.9044 16 6 2.8353 2.5287 1.9781 17 7 1.6276 2.1187 1.2386 18 6 0.3357 2.3369 1.6366 19 1 -0.4572 2.3680 0.9039 20 6 0.0449 2.5180 2.9818 21 7 -1.0817 3.0967 3.3396 22 14 1.2529 1.9404 4.2844 23 1 2.2100 3.0335 4.5915 24 1 1.9970 0.7583 3.7801 25 1 0.5122 1.5701 5.5170 26 1 -0.3634 -1.0192 -0.1311 27 1 -0.3634 0.3962 0.9482 28 1 -0.3633 0.6232 -0.8172 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8901 31 1 3.5086 2.1840 -2.0285 32 1 5.6620 2.5767 -3.4712 33 1 5.0239 -0.4470 -3.7694 34 1 4.5050 0.9150 -4.8541 35 1 6.8097 1.3367 -5.5773 36 1 6.8818 -1.5646 -4.5604 37 1 6.8028 -1.0319 -6.2569 38 1 8.2926 -0.7843 -5.3147 39 1 7.9709 1.7547 -3.4604 40 1 7.4654 0.1445 -2.7876 41 1 4.9312 2.4940 1.3448 42 1 3.8846 3.5857 0.3772 43 1 2.6773 3.4951 2.4566 44 1 3.0995 1.7755 2.7204 45 1 -1.2847 3.2236 4.2795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087536474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:44 Heat of formation + Delta-G solvation = -24.610341 kcal Electronic energy + Delta-G solvation = -22917.676216 eV Core-core repulsion = 19742.086395 eV Total energy + Delta-G solvation = -3175.589821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46852 -40.06615 -38.50066 -35.62361 -34.18475 -33.90482 -31.50924 -30.60349 -28.69790 -26.61656 -26.42804 -24.94664 -23.88104 -22.25906 -21.57756 -20.84952 -20.17089 -18.90988 -18.11780 -17.55169 -17.00059 -16.54111 -16.23383 -15.66617 -15.34483 -15.21279 -14.87161 -14.58591 -14.28036 -14.07658 -13.93128 -13.81114 -13.55498 -13.37918 -13.09029 -13.01948 -12.98357 -12.61955 -12.39292 -12.17788 -12.03980 -11.96577 -11.73692 -11.68801 -11.54013 -11.39959 -11.29030 -11.06581 -10.72357 -10.61053 -10.00638 -8.97463 -8.13988 -5.42241 1.29640 1.38789 1.45604 1.65465 2.17259 2.42828 3.08532 3.30424 3.55547 3.64399 3.68350 3.76136 3.82150 3.87788 4.11186 4.21719 4.24472 4.40039 4.47282 4.55293 4.58985 4.65483 4.69919 4.82944 4.85460 4.89810 4.91029 4.95191 4.97439 4.99504 5.07171 5.14575 5.16114 5.19006 5.24793 5.37556 5.41815 5.58978 5.66567 5.69141 5.80418 6.16567 6.62116 6.79071 7.30817 7.56766 8.14263 9.05620 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031829 B = 0.004091 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.501365 B = 6843.073274 C = 7258.412935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.157 3.843 4 H 0.060 0.940 5 C 0.146 3.854 6 H 0.080 0.920 7 N -0.703 5.703 8 C 0.520 3.480 9 O -0.587 6.587 10 C -0.134 4.134 11 C -0.116 4.116 12 C -0.105 4.105 13 C -0.144 4.144 14 C -0.121 4.121 15 C -0.127 4.127 16 C 0.104 3.896 17 N -0.614 5.614 18 C -0.202 4.202 19 H 0.074 0.926 20 C -0.032 4.032 21 N -0.956 5.956 22 Si 0.930 3.070 23 H -0.280 1.280 24 H -0.269 1.269 25 H -0.312 1.312 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.415 0.585 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.018 0.982 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.144 -3.839 -18.953 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.051 3.949 4 H 0.078 0.922 5 C 0.040 3.960 6 H 0.099 0.901 7 N -0.354 5.354 8 C 0.308 3.692 9 O -0.467 6.467 10 C -0.155 4.155 11 C -0.153 4.153 12 C -0.123 4.123 13 C -0.201 4.201 14 C -0.159 4.159 15 C -0.166 4.166 16 C -0.021 4.021 17 N -0.340 5.340 18 C -0.331 4.331 19 H 0.092 0.908 20 C -0.226 4.226 21 N -0.604 5.604 22 Si 0.761 3.239 23 H -0.207 1.207 24 H -0.195 1.195 25 H -0.241 1.241 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.252 0.748 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.457 -4.204 -18.259 24.290 hybrid contribution -0.242 -0.044 1.412 1.433 sum 15.215 -4.248 -16.847 23.095 Atomic orbital electron populations 1.21829 0.95798 1.00317 1.02491 1.21845 0.96709 0.96926 1.00503 1.21337 0.91285 0.92486 0.89833 0.92230 1.21706 0.93219 0.98138 0.82946 0.90147 1.45893 1.17838 1.58508 1.13194 1.21206 0.80580 0.77029 0.90338 1.90669 1.57307 1.43347 1.55383 1.22878 0.99287 1.03258 0.90042 1.22956 0.98334 0.97872 0.96175 1.22470 0.94951 0.98863 0.96001 1.21729 1.01308 0.95691 1.01386 1.22909 0.94820 1.00985 0.97158 1.22988 0.97588 0.99355 0.96716 1.21957 0.87460 0.97530 0.95123 1.44856 1.01018 1.65601 1.22558 1.18490 0.83424 1.39788 0.91373 0.90796 1.25567 0.97360 1.01038 0.98646 1.69894 1.27149 1.46647 1.16689 0.86165 0.78830 0.79546 0.79396 1.20660 1.19475 1.24093 0.93016 0.92795 0.93262 0.90821 0.94356 0.74766 0.84240 0.91142 0.88516 0.86943 0.93755 0.91479 0.92142 0.90325 0.91261 0.90504 0.89578 0.93660 0.96450 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 8.86 71.98 0.64 -4.78 16 2 C -0.12 -4.19 5.49 30.59 0.17 -4.03 16 3 C 0.16 5.59 3.03 45.34 0.14 5.73 16 4 H 0.06 2.00 7.72 -2.39 -0.02 1.98 16 5 C 0.15 4.62 2.85 46.18 0.13 4.75 16 6 H 0.08 2.86 7.26 -2.38 -0.02 2.84 16 7 N -0.70 -16.78 5.18 -436.90 -2.26 -19.04 16 8 C 0.52 13.01 7.35 87.66 0.64 13.66 16 9 O -0.59 -20.08 15.55 -3.04 -0.05 -20.13 16 10 C -0.13 -2.15 4.15 -11.01 -0.05 -2.20 16 11 C -0.12 -1.54 7.18 31.12 0.22 -1.32 16 12 C -0.10 -1.24 4.36 -10.28 -0.04 -1.29 16 13 C -0.14 -1.73 9.71 71.98 0.70 -1.04 16 14 C -0.12 -2.02 6.96 31.11 0.22 -1.80 16 15 C -0.13 -4.23 6.76 31.91 0.22 -4.01 16 16 C 0.10 4.43 4.76 86.78 0.41 4.84 16 17 N -0.61 -27.84 2.87 -668.71 -1.92 -29.76 16 18 C -0.20 -10.89 7.74 84.03 0.65 -10.24 16 19 H 0.07 4.25 7.22 -2.91 -0.02 4.23 16 20 C -0.03 -1.83 5.45 84.86 0.46 -1.37 16 21 N -0.96 -59.31 13.97 21.65 0.30 -59.01 16 22 Si 0.93 47.35 24.40 68.60 1.67 49.02 16 23 H -0.28 -13.74 6.93 99.48 0.69 -13.06 16 24 H -0.27 -13.41 6.37 99.48 0.63 -12.77 16 25 H -0.31 -16.22 7.11 99.48 0.71 -15.51 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.05 2.45 5.42 -2.39 -0.01 2.44 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.42 7.51 8.37 -92.71 -0.78 6.73 16 32 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.19 7.91 -2.39 -0.02 1.17 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.04 0.64 7.94 -2.39 -0.02 0.62 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.54 7.39 -2.39 -0.02 1.52 16 41 H 0.08 2.45 8.14 -2.38 -0.02 2.44 16 42 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.05 2.04 7.23 -2.39 -0.02 2.02 16 44 H 0.02 0.80 5.22 -2.39 -0.01 0.79 16 45 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -69.00 344.72 2.35 -66.65 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.09 Total: 15.37 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 4.51 Total: -3.10 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.88 Total: -107.82 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.67 Total: 49.02 kcal Total: -69.00 2.35 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087536474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.041 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds