Wall clock time and date at job start Tue Mar 31 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47118 * 2 1 4 4 H 1.08999 * 109.87785 * 54.10803 * 3 2 1 5 5 C 1.54330 * 109.88371 * 292.93373 * 3 2 1 6 6 H 1.09002 * 110.71747 * 336.75417 * 5 3 2 7 7 N 1.46500 * 110.72074 * 99.84745 * 5 3 2 8 8 C 1.34777 * 120.00195 * 205.00391 * 7 5 3 9 9 O 1.21286 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00224 * 179.97438 * 8 7 5 11 11 H 1.09000 * 115.55013 * 325.72191 * 10 8 7 12 12 C 1.53002 * 117.49718 * 111.38979 * 10 8 7 13 13 C 1.52998 * 117.49792 * 180.02562 * 10 8 7 14 14 C 1.52996 * 117.50227 * 0.02562 * 13 10 8 15 15 C 1.53000 * 117.49589 * 145.02540 * 13 10 8 16 16 C 1.55155 * 102.94408 * 218.38768 * 5 3 2 17 17 C 1.54694 * 101.67349 * 35.33520 * 16 5 3 18 18 N 1.47023 * 109.88617 * 175.12649 * 3 2 1 19 19 C 1.36934 * 125.64472 * 298.32098 * 18 3 2 20 20 H 1.08004 * 120.00314 * 348.19491 * 19 18 3 21 21 C 1.38819 * 120.00056 * 168.19147 * 19 18 3 22 22 N 1.31623 * 119.99599 * 359.72446 * 21 19 18 23 23 Si 1.86793 * 120.00050 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47552 * 60.00012 * 23 21 19 25 25 H 1.48501 * 109.47007 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47338 * 299.99664 * 23 21 19 27 27 H 1.08996 * 109.47535 * 65.44646 * 1 2 3 28 28 H 1.08998 * 109.46547 * 185.45064 * 1 2 3 29 29 H 1.09008 * 109.46786 * 305.44706 * 1 2 3 30 30 H 1.08998 * 109.47148 * 240.00555 * 2 1 3 31 31 H 1.09000 * 109.47838 * 120.00079 * 2 1 3 32 32 H 0.96998 * 120.00139 * 24.99519 * 7 5 3 33 33 H 1.08997 * 117.49848 * 214.98592 * 12 10 8 34 34 H 1.09003 * 117.50014 * 359.97438 * 12 10 8 35 35 H 1.09001 * 109.46806 * 59.99759 * 14 13 10 36 36 H 1.08994 * 109.47355 * 179.97438 * 14 13 10 37 37 H 1.09007 * 109.47177 * 300.00565 * 14 13 10 38 38 H 1.08993 * 109.47312 * 59.99975 * 15 13 10 39 39 H 1.09004 * 109.46900 * 179.97438 * 15 13 10 40 40 H 1.09004 * 109.46635 * 299.99717 * 15 13 10 41 41 H 1.09003 * 111.00523 * 153.57258 * 16 5 3 42 42 H 1.08995 * 111.00583 * 277.39359 * 16 5 3 43 43 H 1.09003 * 110.38660 * 204.35973 * 17 16 5 44 44 H 1.09003 * 110.23539 * 82.11309 * 17 16 5 45 45 H 0.96994 * 119.99681 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9923 0.8304 5 6 1.6818 2.1259 -1.3366 6 1 1.5310 1.3840 -2.1208 7 7 0.4920 2.9673 -1.1860 8 6 -0.2792 3.2417 -2.2567 9 8 0.0115 2.7917 -3.3448 10 6 -1.5035 4.1068 -2.1017 11 1 -2.0346 4.0045 -1.1554 12 6 -1.4762 5.4922 -2.7504 13 6 -2.3378 4.3811 -3.3545 14 6 -1.8658 3.7557 -4.6686 15 6 -3.8542 4.4910 -3.1832 16 6 2.9361 2.9900 -1.6322 17 6 4.0708 2.0918 -1.0858 18 7 3.5055 1.4548 0.1175 19 6 4.2256 0.9616 1.1725 20 1 3.7237 0.6920 2.0901 21 6 5.6009 0.8079 1.0628 22 7 6.2119 1.1312 -0.0573 23 14 6.5832 0.1343 2.5017 24 1 6.0960 -1.2270 2.8398 25 1 8.0201 0.0689 2.1327 26 1 6.4147 1.0264 3.6770 27 1 -0.3634 0.4270 -0.9347 28 1 -0.3632 -1.0230 0.0976 29 1 -0.3633 0.5961 0.8373 30 1 1.8933 -0.5137 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 0.2591 3.3268 -0.3157 33 1 -1.9898 6.3013 -2.2311 34 1 -0.5727 5.7781 -3.2890 35 1 -1.8456 2.6706 -4.5679 36 1 -2.5508 4.0332 -5.4697 37 1 -0.8649 4.1174 -4.9043 38 1 -4.0843 5.3079 -2.4993 39 1 -4.3159 4.6869 -4.1510 40 1 -4.2426 3.5569 -2.7773 41 1 3.0505 3.1591 -2.7030 42 1 2.8954 3.9356 -1.0916 43 1 4.9396 2.6954 -0.8229 44 1 4.3419 1.3363 -1.8233 45 1 7.1729 1.0241 -0.1339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087544543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:29 Heat of formation + Delta-G solvation = -0.389178 kcal Electronic energy + Delta-G solvation = -22966.603704 eV Core-core repulsion = 19792.064191 eV Total energy + Delta-G solvation = -3174.539513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19379 -38.33264 -36.75300 -33.95915 -32.74663 -31.70975 -29.70375 -28.85632 -27.51241 -26.64780 -24.80422 -23.57356 -22.02693 -20.53555 -20.11661 -19.75278 -18.77982 -17.00050 -16.79356 -15.73166 -15.00303 -14.74456 -14.37614 -14.23337 -13.88842 -13.80230 -13.66354 -13.36636 -13.00731 -12.68946 -12.58618 -12.08244 -11.99802 -11.91773 -11.86518 -11.63754 -11.31929 -11.12959 -10.86934 -10.82762 -10.61376 -10.44274 -10.30639 -10.19854 -10.10068 -9.92074 -9.72056 -9.63147 -9.26818 -8.61951 -8.51597 -6.82251 -5.73608 -3.10076 2.67807 3.32999 3.39745 3.44316 3.45249 3.72324 4.47652 4.54094 4.62026 4.72670 4.97059 5.10680 5.30097 5.36986 5.44713 5.50925 5.54532 5.55403 5.57348 5.76221 5.78221 5.81940 5.83446 5.88723 5.91279 5.97916 6.07286 6.12046 6.24785 6.33688 6.42999 6.47846 6.50725 6.60020 6.69906 6.77515 6.96389 7.17362 7.53584 7.59803 7.79238 7.82533 8.27162 8.51454 9.18744 9.79861 10.47034 11.37398 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033608 B = 0.003901 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.935438 B = 7176.704644 C = 7524.512565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.138 3.862 6 H 0.093 0.907 7 N -0.711 5.711 8 C 0.540 3.460 9 O -0.539 6.539 10 C -0.187 4.187 11 H 0.119 0.881 12 C -0.148 4.148 13 C -0.096 4.096 14 C -0.102 4.102 15 C -0.116 4.116 16 C -0.156 4.156 17 C 0.173 3.827 18 N -0.595 5.595 19 C -0.228 4.228 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.275 7.013 -3.917 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.111 0.889 7 N -0.360 5.360 8 C 0.327 3.673 9 O -0.416 6.416 10 C -0.208 4.208 11 H 0.137 0.863 12 C -0.186 4.186 13 C -0.096 4.096 14 C -0.159 4.159 15 C -0.173 4.173 16 C -0.195 4.195 17 C 0.047 3.953 18 N -0.319 5.319 19 C -0.356 4.356 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.564 5.564 23 Si 0.742 3.258 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.789 6.623 -4.652 18.638 hybrid contribution 0.518 -0.274 1.381 1.500 sum -16.271 6.349 -3.270 17.770 Atomic orbital electron populations 1.21759 0.97252 1.00438 1.00907 1.22018 0.93606 0.99210 1.02336 1.21075 0.87119 0.93395 0.93146 0.94819 1.22087 0.83357 0.92492 0.98670 0.88895 1.46033 1.27093 1.51901 1.11009 1.19575 0.83069 0.80409 0.84283 1.90690 1.72466 1.52702 1.25772 1.22389 0.98993 0.99943 0.99505 0.86280 1.23202 1.02473 0.90248 1.02640 1.21565 0.93258 1.00998 0.93814 1.21345 1.00564 1.01435 0.92570 1.21391 0.92035 1.01794 1.02059 1.23380 0.96801 0.99117 1.00248 1.21432 0.93179 0.93175 0.87477 1.44442 0.98536 1.69068 1.19871 1.18911 0.89326 1.36109 0.91248 0.90716 1.24868 0.96861 1.01173 0.97239 1.69919 1.08812 1.52976 1.24741 0.86217 0.79183 0.78972 0.81473 1.21120 1.21605 1.21162 0.93319 0.93736 0.93483 0.92459 0.91721 0.76930 0.88086 0.88265 0.91362 0.93570 0.91590 0.92408 0.91761 0.92041 0.92026 0.92143 0.90344 0.95718 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.64 37.16 0.36 -1.83 16 2 C -0.13 -2.48 5.43 -26.73 -0.15 -2.62 16 3 C 0.16 3.20 2.92 -66.95 -0.20 3.01 16 4 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 5 C 0.14 2.51 2.09 -66.09 -0.14 2.37 16 6 H 0.09 1.85 7.17 -51.93 -0.37 1.48 16 7 N -0.71 -10.35 4.94 -52.03 -0.26 -10.61 16 8 C 0.54 7.91 7.59 -10.99 -0.08 7.82 16 9 O -0.54 -9.61 12.75 5.55 0.07 -9.54 16 10 C -0.19 -2.06 5.91 -91.77 -0.54 -2.60 16 11 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 12 C -0.15 -1.45 9.53 -26.72 -0.25 -1.70 16 13 C -0.10 -0.99 2.70 -154.50 -0.42 -1.41 16 14 C -0.10 -1.22 8.09 37.16 0.30 -0.92 16 15 C -0.12 -0.91 9.85 37.16 0.37 -0.55 16 16 C -0.16 -3.07 6.76 -24.70 -0.17 -3.24 16 17 C 0.17 4.19 5.44 -2.65 -0.01 4.18 16 18 N -0.59 -14.74 3.13 -162.70 -0.51 -15.25 16 19 C -0.23 -6.17 9.73 -15.06 -0.15 -6.32 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 22 N -0.92 -26.65 10.48 55.49 0.58 -26.07 16 23 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 H 0.05 0.74 7.46 -51.93 -0.39 0.35 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 31 H 0.06 1.30 7.85 -51.93 -0.41 0.89 16 32 H 0.40 4.91 8.37 -40.82 -0.34 4.57 16 33 H 0.10 0.77 8.05 -51.93 -0.42 0.36 16 34 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 35 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 36 H 0.05 0.46 7.92 -51.93 -0.41 0.04 16 37 H 0.07 0.89 7.02 -51.93 -0.36 0.53 16 38 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 39 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 2.11 6.75 -51.93 -0.35 1.76 16 44 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -30.22 353.90 -8.97 -39.19 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.99 Total: 4.16 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.17 Total: -4.03 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.18 Total: -51.93 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.22 -8.97 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087544543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.798 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds