Wall clock time and date at job start Tue Mar 31 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47118 * 2 1 4 4 H 1.08999 * 109.87785 * 54.10803 * 3 2 1 5 5 C 1.54330 * 109.88371 * 292.93373 * 3 2 1 6 6 H 1.09002 * 110.71747 * 336.75417 * 5 3 2 7 7 N 1.46500 * 110.72074 * 99.84745 * 5 3 2 8 8 C 1.34777 * 120.00195 * 205.00391 * 7 5 3 9 9 O 1.21286 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00224 * 179.97438 * 8 7 5 11 11 H 1.09000 * 115.55013 * 325.72191 * 10 8 7 12 12 C 1.53002 * 117.49718 * 111.38979 * 10 8 7 13 13 C 1.52998 * 117.49792 * 180.02562 * 10 8 7 14 14 C 1.52996 * 117.50227 * 0.02562 * 13 10 8 15 15 C 1.53000 * 117.49589 * 145.02540 * 13 10 8 16 16 C 1.55155 * 102.94408 * 218.38768 * 5 3 2 17 17 C 1.54694 * 101.67349 * 35.33520 * 16 5 3 18 18 N 1.47023 * 109.88617 * 175.12649 * 3 2 1 19 19 C 1.36934 * 125.64472 * 298.32098 * 18 3 2 20 20 H 1.08004 * 120.00314 * 348.19491 * 19 18 3 21 21 C 1.38819 * 120.00056 * 168.19147 * 19 18 3 22 22 N 1.31623 * 119.99599 * 359.72446 * 21 19 18 23 23 Si 1.86793 * 120.00050 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47552 * 60.00012 * 23 21 19 25 25 H 1.48501 * 109.47007 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47338 * 299.99664 * 23 21 19 27 27 H 1.08996 * 109.47535 * 65.44646 * 1 2 3 28 28 H 1.08998 * 109.46547 * 185.45064 * 1 2 3 29 29 H 1.09008 * 109.46786 * 305.44706 * 1 2 3 30 30 H 1.08998 * 109.47148 * 240.00555 * 2 1 3 31 31 H 1.09000 * 109.47838 * 120.00079 * 2 1 3 32 32 H 0.96998 * 120.00139 * 24.99519 * 7 5 3 33 33 H 1.08997 * 117.49848 * 214.98592 * 12 10 8 34 34 H 1.09003 * 117.50014 * 359.97438 * 12 10 8 35 35 H 1.09001 * 109.46806 * 59.99759 * 14 13 10 36 36 H 1.08994 * 109.47355 * 179.97438 * 14 13 10 37 37 H 1.09007 * 109.47177 * 300.00565 * 14 13 10 38 38 H 1.08993 * 109.47312 * 59.99975 * 15 13 10 39 39 H 1.09004 * 109.46900 * 179.97438 * 15 13 10 40 40 H 1.09004 * 109.46635 * 299.99717 * 15 13 10 41 41 H 1.09003 * 111.00523 * 153.57258 * 16 5 3 42 42 H 1.08995 * 111.00583 * 277.39359 * 16 5 3 43 43 H 1.09003 * 110.38660 * 204.35973 * 17 16 5 44 44 H 1.09003 * 110.23539 * 82.11309 * 17 16 5 45 45 H 0.96994 * 119.99681 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9923 0.8304 5 6 1.6818 2.1259 -1.3366 6 1 1.5310 1.3840 -2.1208 7 7 0.4920 2.9673 -1.1860 8 6 -0.2792 3.2417 -2.2567 9 8 0.0115 2.7917 -3.3448 10 6 -1.5035 4.1068 -2.1017 11 1 -2.0346 4.0045 -1.1554 12 6 -1.4762 5.4922 -2.7504 13 6 -2.3378 4.3811 -3.3545 14 6 -1.8658 3.7557 -4.6686 15 6 -3.8542 4.4910 -3.1832 16 6 2.9361 2.9900 -1.6322 17 6 4.0708 2.0918 -1.0858 18 7 3.5055 1.4548 0.1175 19 6 4.2256 0.9616 1.1725 20 1 3.7237 0.6920 2.0901 21 6 5.6009 0.8079 1.0628 22 7 6.2119 1.1312 -0.0573 23 14 6.5832 0.1343 2.5017 24 1 6.0960 -1.2270 2.8398 25 1 8.0201 0.0689 2.1327 26 1 6.4147 1.0264 3.6770 27 1 -0.3634 0.4270 -0.9347 28 1 -0.3632 -1.0230 0.0976 29 1 -0.3633 0.5961 0.8373 30 1 1.8933 -0.5137 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 0.2591 3.3268 -0.3157 33 1 -1.9898 6.3013 -2.2311 34 1 -0.5727 5.7781 -3.2890 35 1 -1.8456 2.6706 -4.5679 36 1 -2.5508 4.0332 -5.4697 37 1 -0.8649 4.1174 -4.9043 38 1 -4.0843 5.3079 -2.4993 39 1 -4.3159 4.6869 -4.1510 40 1 -4.2426 3.5569 -2.7773 41 1 3.0505 3.1591 -2.7030 42 1 2.8954 3.9356 -1.0916 43 1 4.9396 2.6954 -0.8229 44 1 4.3419 1.3363 -1.8233 45 1 7.1729 1.0241 -0.1339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087544543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:28 Heat of formation + Delta-G solvation = -18.129184 kcal Electronic energy + Delta-G solvation = -22967.372968 eV Core-core repulsion = 19792.064191 eV Total energy + Delta-G solvation = -3175.308777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35479 -39.78114 -37.91245 -35.57184 -34.29040 -33.49937 -31.05461 -30.19458 -28.28876 -28.17252 -26.55259 -24.88408 -23.43911 -22.18324 -21.53198 -21.07584 -19.84129 -18.77084 -18.07083 -17.21803 -16.66635 -16.04077 -15.86347 -15.51767 -15.31932 -15.20038 -14.70831 -14.47253 -14.30543 -14.03677 -13.74011 -13.57774 -13.41860 -13.25590 -12.91311 -12.83174 -12.69284 -12.66216 -12.57267 -12.23902 -12.07800 -12.06537 -12.00276 -11.89061 -11.56315 -11.37922 -11.10930 -10.80978 -10.68642 -10.38082 -9.91794 -8.85766 -7.84323 -5.22748 1.46902 1.49916 1.56035 1.58471 2.14831 2.51665 2.85491 3.34181 3.54103 3.72145 3.81041 3.84357 3.88625 3.94548 4.17037 4.23195 4.26063 4.35477 4.40265 4.59720 4.64421 4.72467 4.75320 4.86719 4.87009 4.89868 4.99739 5.04240 5.11400 5.13408 5.14933 5.17336 5.17842 5.30353 5.36865 5.45203 5.49794 5.56328 5.58439 5.69506 5.71317 6.22845 6.66238 7.08595 7.36071 7.76577 8.43139 9.25853 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033608 B = 0.003901 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.935438 B = 7176.704644 C = 7524.512565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.159 3.841 4 H 0.052 0.948 5 C 0.158 3.842 6 H 0.074 0.926 7 N -0.700 5.700 8 C 0.537 3.463 9 O -0.575 6.575 10 C -0.191 4.191 11 H 0.149 0.851 12 C -0.137 4.137 13 C -0.100 4.100 14 C -0.100 4.100 15 C -0.111 4.111 16 C -0.141 4.141 17 C 0.180 3.820 18 N -0.614 5.614 19 C -0.234 4.234 20 H 0.083 0.917 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.274 1.274 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.412 0.588 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.046 0.954 44 H -0.010 1.010 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 8.162 -2.389 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.070 0.930 5 C 0.052 3.948 6 H 0.092 0.908 7 N -0.351 5.351 8 C 0.325 3.675 9 O -0.455 6.455 10 C -0.211 4.211 11 H 0.167 0.833 12 C -0.174 4.174 13 C -0.101 4.101 14 C -0.157 4.157 15 C -0.168 4.168 16 C -0.180 4.180 17 C 0.055 3.945 18 N -0.338 5.338 19 C -0.363 4.363 20 H 0.101 0.899 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.805 3.195 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.200 1.200 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.249 0.751 33 H 0.150 0.850 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.008 0.992 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.904 7.787 -3.095 21.596 hybrid contribution 1.446 -0.634 0.840 1.788 sum -18.458 7.153 -2.255 19.923 Atomic orbital electron populations 1.21631 0.93751 1.01902 1.01697 1.21911 0.96575 0.97707 1.00456 1.21260 0.84490 0.94565 0.94490 0.93044 1.21582 0.84156 0.92020 0.97014 0.90804 1.45830 1.25816 1.51382 1.12093 1.20289 0.83745 0.80064 0.83378 1.90694 1.73500 1.54084 1.27236 1.22421 0.97462 1.00014 1.01236 0.83336 1.23297 1.01888 0.90356 1.01868 1.21686 0.94964 1.01036 0.92389 1.21263 0.99815 1.00000 0.94632 1.21395 0.89692 1.02659 1.03045 1.23182 0.95847 0.98799 1.00202 1.21126 0.93902 0.92509 0.86989 1.44688 1.00745 1.69109 1.19298 1.19298 0.89798 1.35025 0.92135 0.89893 1.25695 0.98070 1.02187 0.99785 1.70143 1.08422 1.54588 1.26768 0.85177 0.77065 0.78544 0.78697 1.20424 1.22387 1.20005 0.93385 0.92279 0.91433 0.94753 0.93229 0.75127 0.85011 0.89833 0.93640 0.91749 0.94006 0.90515 0.91087 0.91873 0.91809 0.90926 0.93579 0.99235 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.64 71.98 0.69 -2.96 16 2 C -0.13 -4.70 5.43 30.59 0.17 -4.54 16 3 C 0.16 6.23 2.92 45.34 0.13 6.36 16 4 H 0.05 1.88 7.72 -2.39 -0.02 1.86 16 5 C 0.16 5.68 2.09 46.18 0.10 5.78 16 6 H 0.07 2.99 7.17 -2.39 -0.02 2.97 16 7 N -0.70 -19.04 4.94 -436.90 -2.16 -21.19 16 8 C 0.54 14.88 7.59 87.66 0.67 15.54 16 9 O -0.58 -20.54 12.75 -3.05 -0.04 -20.58 16 10 C -0.19 -3.60 5.91 -11.54 -0.07 -3.67 16 11 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.14 -2.24 9.53 30.60 0.29 -1.95 16 13 C -0.10 -1.81 2.70 -52.17 -0.14 -1.95 16 14 C -0.10 -2.31 8.09 71.98 0.58 -1.73 16 15 C -0.11 -1.33 9.85 71.98 0.71 -0.62 16 16 C -0.14 -5.62 6.76 31.91 0.22 -5.40 16 17 C 0.18 9.18 5.44 86.78 0.47 9.65 16 18 N -0.61 -31.00 3.13 -668.67 -2.09 -33.09 16 19 C -0.23 -12.80 9.73 84.04 0.82 -11.99 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.06 -3.63 5.47 84.86 0.46 -3.17 16 22 N -0.95 -57.47 10.48 21.65 0.23 -57.24 16 23 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 H 0.05 1.34 7.46 -2.39 -0.02 1.33 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 31 H 0.05 1.97 7.85 -2.39 -0.02 1.95 16 32 H 0.41 8.86 8.37 -92.71 -0.78 8.08 16 33 H 0.13 1.38 8.05 -2.39 -0.02 1.36 16 34 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 35 H 0.04 1.24 7.26 -2.39 -0.02 1.22 16 36 H 0.06 1.20 7.92 -2.39 -0.02 1.18 16 37 H 0.04 1.14 7.02 -2.38 -0.02 1.13 16 38 H 0.08 0.65 7.90 -2.39 -0.02 0.64 16 39 H 0.07 0.77 7.92 -2.39 -0.02 0.75 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.07 2.72 8.14 -2.39 -0.02 2.71 16 43 H 0.05 2.62 6.75 -2.39 -0.02 2.60 16 44 H -0.01 -0.59 8.11 -2.39 -0.02 -0.61 16 45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -68.62 353.90 3.24 -65.38 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.18 Total: 19.84 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.10 Total: -0.63 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -4.02 Total: -111.52 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.04 Total: -20.58 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.62 3.24 -65.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087544543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.252 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds