Wall clock time and date at job start Tue Mar 31 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46732 * 2 1 4 4 H 1.08995 * 109.99687 * 311.34287 * 3 2 1 5 5 C 1.54322 * 109.88189 * 190.24522 * 3 2 1 6 6 H 1.09000 * 110.72086 * 336.75668 * 5 3 2 7 7 N 1.46498 * 110.71868 * 100.02731 * 5 3 2 8 8 C 1.34785 * 119.99961 * 205.00112 * 7 5 3 9 9 O 1.21282 * 119.99843 * 359.97438 * 8 7 5 10 10 C 1.50693 * 119.99712 * 179.97438 * 8 7 5 11 11 C 1.53005 * 112.85113 * 50.33501 * 10 8 7 12 12 C 1.53777 * 113.61587 * 279.13474 * 10 8 7 13 13 C 1.53962 * 87.02179 * 220.05156 * 12 10 8 14 14 C 1.53785 * 87.10908 * 25.36256 * 13 12 10 15 15 C 1.55163 * 102.94369 * 218.39060 * 5 3 2 16 16 C 1.54690 * 101.67435 * 35.33686 * 15 5 3 17 17 N 1.47029 * 109.88169 * 72.44108 * 3 2 1 18 18 C 1.36938 * 125.64358 * 298.31841 * 17 3 2 19 19 H 1.07999 * 120.00132 * 47.45203 * 18 17 3 20 20 C 1.38815 * 119.99593 * 227.44499 * 18 17 3 21 21 N 1.31618 * 119.99783 * 193.22739 * 20 18 17 22 22 Si 1.86797 * 120.00080 * 13.23705 * 20 18 17 23 23 H 1.48505 * 109.47033 * 267.33393 * 22 20 18 24 24 H 1.48497 * 109.47417 * 147.33993 * 22 20 18 25 25 H 1.48493 * 109.47414 * 27.33572 * 22 20 18 26 26 H 1.08992 * 109.47607 * 38.59458 * 1 2 3 27 27 H 1.08998 * 109.46799 * 158.59053 * 1 2 3 28 28 H 1.08998 * 109.47116 * 278.58903 * 1 2 3 29 29 H 1.08991 * 109.47248 * 240.00305 * 2 1 3 30 30 H 1.09000 * 109.46973 * 119.99894 * 2 1 3 31 31 H 0.96994 * 120.00183 * 25.00187 * 7 5 3 32 32 H 1.08999 * 109.47040 * 69.66314 * 11 10 8 33 33 H 1.09000 * 109.46986 * 189.66575 * 11 10 8 34 34 H 1.08996 * 109.46910 * 309.65976 * 11 10 8 35 35 H 1.08997 * 113.61613 * 334.57033 * 12 10 8 36 36 H 1.08997 * 113.61538 * 105.47493 * 12 10 8 37 37 H 1.08999 * 113.53475 * 270.81079 * 13 12 10 38 38 H 1.08994 * 113.66805 * 139.93473 * 13 12 10 39 39 H 1.08993 * 113.61129 * 220.09164 * 14 13 12 40 40 H 1.08997 * 113.61243 * 89.19069 * 14 13 12 41 41 H 1.08995 * 111.00226 * 153.57363 * 15 5 3 42 42 H 1.08991 * 111.00284 * 277.39083 * 15 5 3 43 43 H 1.09005 * 110.38985 * 204.36332 * 16 15 5 44 44 H 1.09000 * 110.23465 * 82.11329 * 16 15 5 45 45 H 0.96996 * 119.99744 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5263 2.0195 -0.7690 5 6 3.5613 1.4614 -0.2581 6 1 4.0109 0.5073 0.0166 7 7 3.8455 1.7859 -1.6582 8 6 5.0002 1.3806 -2.2229 9 8 5.8042 0.7476 -1.5718 10 6 5.2922 1.7138 -3.6632 11 6 5.0941 3.1972 -3.9818 12 6 4.6047 0.7714 -4.6652 13 6 5.9076 0.8222 -5.4840 14 6 6.6310 1.1491 -4.1669 15 6 4.0589 2.5931 0.6796 16 6 3.1166 2.4292 1.8954 17 7 1.8133 2.0530 1.3182 18 6 0.5932 2.2456 1.9093 19 1 -0.1271 1.4413 1.9357 20 6 0.2822 3.4746 2.4747 21 7 -0.7655 3.5902 3.2630 22 14 1.3504 4.9646 2.1166 23 1 2.3940 5.0892 3.1659 24 1 0.5080 6.1874 2.1089 25 1 1.9987 4.8017 0.7906 26 1 -0.3634 0.8031 -0.6410 27 1 -0.3633 -0.9568 -0.3751 28 1 -0.3633 0.1535 1.0161 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.2026 2.2924 -2.1787 32 1 5.8732 3.7812 -3.4920 33 1 5.1504 3.3479 -5.0598 34 1 4.1174 3.5190 -3.6206 35 1 4.3841 -0.2147 -4.2565 36 1 3.7513 1.2210 -5.1726 37 1 5.9339 1.6348 -6.2100 38 1 6.1930 -0.1387 -5.9122 39 1 7.4108 1.9032 -4.2727 40 1 6.9654 0.2665 -3.6218 41 1 5.0989 2.4350 0.9650 42 1 3.9275 3.5707 0.2159 43 1 3.0329 3.3694 2.4405 44 1 3.4826 1.6401 2.5523 45 1 -0.9826 4.4489 3.6583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087688397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:49 Heat of formation + Delta-G solvation = -3.945067 kcal Electronic energy + Delta-G solvation = -23329.033889 eV Core-core repulsion = 20154.340182 eV Total energy + Delta-G solvation = -3174.693708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64481 -38.67873 -37.23117 -34.12597 -32.58226 -32.15286 -30.12704 -29.01737 -27.09336 -25.85706 -25.14578 -23.97169 -22.05534 -21.32866 -20.28670 -19.75557 -18.47648 -17.15940 -16.92724 -16.46783 -15.41751 -15.25499 -14.73198 -14.37357 -14.01080 -13.98823 -13.68933 -12.88480 -12.83833 -12.63175 -12.58143 -12.48478 -12.37540 -12.20621 -11.85006 -11.51547 -11.45017 -11.28859 -11.19855 -10.92274 -10.80516 -10.70204 -10.48846 -10.44964 -10.25305 -10.03137 -9.91565 -9.44563 -9.41555 -8.72700 -8.52712 -6.62090 -6.00574 -3.59427 2.73769 3.30165 3.32439 3.42090 3.48026 4.25673 4.33837 4.49106 4.54360 4.58374 4.84661 5.04232 5.15259 5.23608 5.25185 5.35401 5.43096 5.45289 5.58472 5.60291 5.61724 5.66785 5.80705 5.82372 5.83993 5.91327 5.97577 6.02791 6.09311 6.20652 6.24209 6.37746 6.44990 6.53413 6.58694 6.67030 6.78448 6.86551 7.06895 7.08866 7.70263 8.01961 8.37508 8.42341 8.85820 9.62647 10.26642 11.11941 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.004940 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.686301 B = 5666.448499 C = 6122.246903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.154 3.846 4 H 0.044 0.956 5 C 0.134 3.866 6 H 0.096 0.904 7 N -0.713 5.713 8 C 0.528 3.472 9 O -0.544 6.544 10 C -0.112 4.112 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.141 4.141 14 C -0.113 4.113 15 C -0.146 4.146 16 C 0.119 3.881 17 N -0.598 5.598 18 C -0.253 4.253 19 H 0.090 0.910 20 C 0.041 3.959 21 N -0.903 5.903 22 Si 0.888 3.112 23 H -0.286 1.286 24 H -0.302 1.302 25 H -0.267 1.267 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.032 0.968 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.793 -2.953 -16.442 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.047 3.953 4 H 0.061 0.939 5 C 0.029 3.971 6 H 0.114 0.886 7 N -0.363 5.363 8 C 0.313 3.687 9 O -0.422 6.422 10 C -0.115 4.115 11 C -0.185 4.185 12 C -0.159 4.159 13 C -0.178 4.178 14 C -0.151 4.151 15 C -0.186 4.186 16 C -0.006 4.006 17 N -0.325 5.325 18 C -0.380 4.380 19 H 0.107 0.893 20 C -0.161 4.161 21 N -0.544 5.544 22 Si 0.718 3.282 23 H -0.213 1.213 24 H -0.230 1.230 25 H -0.192 1.192 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.233 0.767 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.158 -3.283 -15.807 19.625 hybrid contribution 0.161 1.308 -0.220 1.337 sum 11.319 -1.975 -16.027 19.720 Atomic orbital electron populations 1.21845 0.95539 0.99153 1.03521 1.21890 0.96784 0.97452 1.00107 1.21326 0.90418 0.93357 0.90221 0.93875 1.22087 0.96782 0.98772 0.79503 0.88571 1.46067 1.20441 1.56707 1.13108 1.20343 0.81305 0.78689 0.88322 1.90665 1.46994 1.40389 1.64104 1.22160 1.00082 0.97331 0.91906 1.21593 1.02507 0.92158 1.02204 1.22946 0.97486 0.99370 0.96107 1.22858 0.96348 1.02008 0.96588 1.22859 0.94714 1.01722 0.95829 1.23150 0.99232 0.98604 0.97565 1.21844 0.86600 0.98294 0.93821 1.44500 1.01562 1.72470 1.13948 1.18721 0.90853 0.96123 1.32348 0.89258 1.25746 0.95433 0.97586 0.97287 1.69780 1.27992 1.25181 1.31431 0.86685 0.79574 0.82688 0.79239 1.21328 1.22997 1.19219 0.93186 0.94987 0.90713 0.93779 0.92202 0.76664 0.91741 0.91360 0.91806 0.89655 0.90593 0.90003 0.91123 0.91147 0.88782 0.91340 0.91500 0.93713 0.94962 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.11 37.16 0.34 -2.28 16 2 C -0.12 -2.20 5.40 -26.73 -0.14 -2.34 16 3 C 0.15 2.94 2.93 -66.95 -0.20 2.75 16 4 H 0.04 0.84 7.47 -51.93 -0.39 0.46 16 5 C 0.13 2.30 2.83 -66.09 -0.19 2.11 16 6 H 0.10 1.75 7.26 -51.93 -0.38 1.38 16 7 N -0.71 -10.24 5.07 -52.03 -0.26 -10.51 16 8 C 0.53 7.61 6.91 -10.99 -0.08 7.53 16 9 O -0.54 -9.83 15.56 5.56 0.09 -9.74 16 10 C -0.11 -1.18 1.25 -154.85 -0.19 -1.37 16 11 C -0.13 -1.12 8.98 37.16 0.33 -0.79 16 12 C -0.12 -1.09 7.21 -25.83 -0.19 -1.27 16 13 C -0.14 -1.10 7.74 -25.82 -0.20 -1.30 16 14 C -0.11 -1.13 6.99 -25.91 -0.18 -1.32 16 15 C -0.15 -2.69 6.76 -24.70 -0.17 -2.85 16 16 C 0.12 2.56 6.24 -2.65 -0.02 2.54 16 17 N -0.60 -13.82 2.47 -162.71 -0.40 -14.22 16 18 C -0.25 -6.80 9.55 -15.06 -0.14 -6.94 16 19 H 0.09 2.54 5.25 -52.49 -0.28 2.27 16 20 C 0.04 1.16 5.48 -17.43 -0.10 1.06 16 21 N -0.90 -27.03 13.97 55.49 0.78 -26.25 16 22 Si 0.89 22.10 25.13 -169.99 -4.27 17.83 16 23 H -0.29 -7.06 6.82 56.52 0.39 -6.68 16 24 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 25 H -0.27 -6.42 6.95 56.52 0.39 -6.03 16 26 H 0.05 0.92 7.79 -51.93 -0.40 0.51 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.57 5.53 -51.93 -0.29 1.28 16 29 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.40 4.98 7.35 -40.82 -0.30 4.67 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.48 7.34 -51.93 -0.38 0.10 16 34 H 0.06 0.55 7.11 -51.93 -0.37 0.18 16 35 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.08 0.54 7.64 -51.93 -0.40 0.14 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 40 H 0.09 1.10 7.45 -51.93 -0.39 0.71 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.24 7.99 -51.93 -0.41 0.83 16 43 H 0.04 1.03 4.21 -51.93 -0.22 0.82 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -30.85 342.42 -7.61 -38.46 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.58 Total: 3.73 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.11 Total: -4.46 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.11 Total: -50.97 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.27 Total: 17.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.85 -7.61 -38.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087688397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.510 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds