Wall clock time and date at job start Tue Mar 31 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46732 * 2 1 4 4 H 1.08995 * 109.99687 * 311.34287 * 3 2 1 5 5 C 1.54322 * 109.88189 * 190.24522 * 3 2 1 6 6 H 1.09000 * 110.72086 * 336.75668 * 5 3 2 7 7 N 1.46498 * 110.71868 * 100.02731 * 5 3 2 8 8 C 1.34785 * 119.99961 * 205.00112 * 7 5 3 9 9 O 1.21282 * 119.99843 * 359.97438 * 8 7 5 10 10 C 1.50693 * 119.99712 * 179.97438 * 8 7 5 11 11 C 1.53005 * 112.85113 * 50.33501 * 10 8 7 12 12 C 1.53777 * 113.61587 * 279.13474 * 10 8 7 13 13 C 1.53962 * 87.02179 * 220.05156 * 12 10 8 14 14 C 1.53785 * 87.10908 * 25.36256 * 13 12 10 15 15 C 1.55163 * 102.94369 * 218.39060 * 5 3 2 16 16 C 1.54690 * 101.67435 * 35.33686 * 15 5 3 17 17 N 1.47029 * 109.88169 * 72.44108 * 3 2 1 18 18 C 1.36938 * 125.64358 * 298.31841 * 17 3 2 19 19 H 1.07999 * 120.00132 * 47.45203 * 18 17 3 20 20 C 1.38815 * 119.99593 * 227.44499 * 18 17 3 21 21 N 1.31618 * 119.99783 * 193.22739 * 20 18 17 22 22 Si 1.86797 * 120.00080 * 13.23705 * 20 18 17 23 23 H 1.48505 * 109.47033 * 267.33393 * 22 20 18 24 24 H 1.48497 * 109.47417 * 147.33993 * 22 20 18 25 25 H 1.48493 * 109.47414 * 27.33572 * 22 20 18 26 26 H 1.08992 * 109.47607 * 38.59458 * 1 2 3 27 27 H 1.08998 * 109.46799 * 158.59053 * 1 2 3 28 28 H 1.08998 * 109.47116 * 278.58903 * 1 2 3 29 29 H 1.08991 * 109.47248 * 240.00305 * 2 1 3 30 30 H 1.09000 * 109.46973 * 119.99894 * 2 1 3 31 31 H 0.96994 * 120.00183 * 25.00187 * 7 5 3 32 32 H 1.08999 * 109.47040 * 69.66314 * 11 10 8 33 33 H 1.09000 * 109.46986 * 189.66575 * 11 10 8 34 34 H 1.08996 * 109.46910 * 309.65976 * 11 10 8 35 35 H 1.08997 * 113.61613 * 334.57033 * 12 10 8 36 36 H 1.08997 * 113.61538 * 105.47493 * 12 10 8 37 37 H 1.08999 * 113.53475 * 270.81079 * 13 12 10 38 38 H 1.08994 * 113.66805 * 139.93473 * 13 12 10 39 39 H 1.08993 * 113.61129 * 220.09164 * 14 13 12 40 40 H 1.08997 * 113.61243 * 89.19069 * 14 13 12 41 41 H 1.08995 * 111.00226 * 153.57363 * 15 5 3 42 42 H 1.08991 * 111.00284 * 277.39083 * 15 5 3 43 43 H 1.09005 * 110.38985 * 204.36332 * 16 15 5 44 44 H 1.09000 * 110.23465 * 82.11329 * 16 15 5 45 45 H 0.96996 * 119.99744 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5263 2.0195 -0.7690 5 6 3.5613 1.4614 -0.2581 6 1 4.0109 0.5073 0.0166 7 7 3.8455 1.7859 -1.6582 8 6 5.0002 1.3806 -2.2229 9 8 5.8042 0.7476 -1.5718 10 6 5.2922 1.7138 -3.6632 11 6 5.0941 3.1972 -3.9818 12 6 4.6047 0.7714 -4.6652 13 6 5.9076 0.8222 -5.4840 14 6 6.6310 1.1491 -4.1669 15 6 4.0589 2.5931 0.6796 16 6 3.1166 2.4292 1.8954 17 7 1.8133 2.0530 1.3182 18 6 0.5932 2.2456 1.9093 19 1 -0.1271 1.4413 1.9357 20 6 0.2822 3.4746 2.4747 21 7 -0.7655 3.5902 3.2630 22 14 1.3504 4.9646 2.1166 23 1 2.3940 5.0892 3.1659 24 1 0.5080 6.1874 2.1089 25 1 1.9987 4.8017 0.7906 26 1 -0.3634 0.8031 -0.6410 27 1 -0.3633 -0.9568 -0.3751 28 1 -0.3633 0.1535 1.0161 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.2026 2.2924 -2.1787 32 1 5.8732 3.7812 -3.4920 33 1 5.1504 3.3479 -5.0598 34 1 4.1174 3.5190 -3.6206 35 1 4.3841 -0.2147 -4.2565 36 1 3.7513 1.2210 -5.1726 37 1 5.9339 1.6348 -6.2100 38 1 6.1930 -0.1387 -5.9122 39 1 7.4108 1.9032 -4.2727 40 1 6.9654 0.2665 -3.6218 41 1 5.0989 2.4350 0.9650 42 1 3.9275 3.5707 0.2159 43 1 3.0329 3.3694 2.4405 44 1 3.4826 1.6401 2.5523 45 1 -0.9826 4.4489 3.6583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087688397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:48 Heat of formation + Delta-G solvation = -23.183551 kcal Electronic energy + Delta-G solvation = -23329.868132 eV Core-core repulsion = 20154.340182 eV Total energy + Delta-G solvation = -3175.527951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.66630 -40.04773 -38.41302 -35.60439 -34.26441 -33.93011 -31.44200 -30.24017 -28.58937 -26.64750 -26.39095 -25.34336 -23.68729 -22.56894 -21.64563 -21.26997 -19.47978 -18.88692 -18.09529 -18.02125 -16.80467 -16.19886 -16.08547 -15.80559 -15.66424 -15.27642 -14.51058 -14.48602 -14.37708 -14.12429 -13.84634 -13.68607 -13.57105 -13.19900 -13.16764 -13.13768 -12.99601 -12.68635 -12.35658 -12.22784 -12.19219 -12.07947 -11.86304 -11.75475 -11.53514 -11.39201 -11.27118 -11.17659 -10.66064 -10.54327 -10.02019 -8.55960 -8.14492 -5.72703 1.31234 1.38029 1.50483 1.62819 2.15676 2.42585 3.07432 3.32641 3.48608 3.58860 3.70237 3.80104 3.83184 3.91563 4.05544 4.10121 4.27114 4.40913 4.46342 4.57547 4.60366 4.67943 4.73855 4.77555 4.83122 4.88599 4.90047 4.94551 5.01318 5.07578 5.08371 5.11335 5.17918 5.19967 5.20702 5.32707 5.38670 5.52322 5.54647 5.62480 5.97271 6.36651 6.57889 6.86296 7.26217 7.52626 8.24400 9.00068 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.004940 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.686301 B = 5666.448499 C = 6122.246903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 C 0.153 3.847 4 H 0.048 0.952 5 C 0.148 3.852 6 H 0.088 0.912 7 N -0.705 5.705 8 C 0.525 3.475 9 O -0.584 6.584 10 C -0.111 4.111 11 C -0.125 4.125 12 C -0.119 4.119 13 C -0.126 4.126 14 C -0.121 4.121 15 C -0.136 4.136 16 C 0.113 3.887 17 N -0.612 5.612 18 C -0.238 4.238 19 H 0.066 0.934 20 C -0.014 4.014 21 N -0.951 5.951 22 Si 0.944 3.056 23 H -0.285 1.285 24 H -0.308 1.308 25 H -0.251 1.251 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.411 0.589 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.253 -2.588 -19.547 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.047 3.953 4 H 0.065 0.935 5 C 0.042 3.958 6 H 0.106 0.894 7 N -0.356 5.356 8 C 0.314 3.686 9 O -0.464 6.464 10 C -0.114 4.114 11 C -0.183 4.183 12 C -0.157 4.157 13 C -0.163 4.163 14 C -0.159 4.159 15 C -0.175 4.175 16 C -0.012 4.012 17 N -0.339 5.339 18 C -0.368 4.368 19 H 0.083 0.917 20 C -0.211 4.211 21 N -0.594 5.594 22 Si 0.773 3.227 23 H -0.212 1.212 24 H -0.237 1.237 25 H -0.175 1.175 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.248 0.752 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.635 -2.926 -18.959 22.971 hybrid contribution -0.270 1.055 0.758 1.327 sum 12.364 -1.871 -18.201 22.083 Atomic orbital electron populations 1.21746 0.95844 1.00517 1.01316 1.21821 0.96374 0.96677 1.00765 1.21424 0.92031 0.93656 0.88187 0.93473 1.21733 0.94888 0.98051 0.81139 0.89378 1.45950 1.20992 1.56794 1.11888 1.21100 0.80360 0.77491 0.89693 1.90651 1.48166 1.42116 1.65438 1.22297 1.00861 0.99027 0.89212 1.21629 1.02474 0.90323 1.03842 1.22968 0.98736 0.98353 0.95645 1.22843 0.94603 1.03168 0.95733 1.22879 0.94910 1.01040 0.97076 1.23059 0.99068 0.99103 0.96261 1.21914 0.86570 0.97506 0.95208 1.44574 1.00955 1.72647 1.15749 1.18679 0.91610 0.95297 1.31165 0.91700 1.26335 0.96834 1.00241 0.97698 1.69905 1.30416 1.25634 1.33484 0.85770 0.77921 0.79243 0.79742 1.21192 1.23671 1.17450 0.93535 0.92278 0.94209 0.91007 0.93524 0.75242 0.92292 0.88896 0.91480 0.90933 0.88663 0.87842 0.90486 0.90409 0.91149 0.90080 0.91217 0.95205 0.94868 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.11 71.98 0.66 -4.24 16 2 C -0.12 -4.03 5.40 30.60 0.17 -3.86 16 3 C 0.15 5.64 2.93 45.34 0.13 5.77 16 4 H 0.05 1.73 7.47 -2.39 -0.02 1.72 16 5 C 0.15 4.81 2.83 46.18 0.13 4.94 16 6 H 0.09 3.08 7.26 -2.39 -0.02 3.06 16 7 N -0.71 -18.48 5.07 -436.91 -2.21 -20.69 16 8 C 0.53 14.08 6.91 87.65 0.61 14.69 16 9 O -0.58 -20.47 15.56 -3.04 -0.05 -20.51 16 10 C -0.11 -2.03 1.25 -52.40 -0.07 -2.10 16 11 C -0.13 -1.74 8.98 71.98 0.65 -1.10 16 12 C -0.12 -1.74 7.21 31.18 0.22 -1.52 16 13 C -0.13 -1.53 7.74 31.18 0.24 -1.29 16 14 C -0.12 -2.16 6.99 31.12 0.22 -1.94 16 15 C -0.14 -4.71 6.76 31.91 0.22 -4.50 16 16 C 0.11 4.74 6.24 86.78 0.54 5.28 16 17 N -0.61 -28.03 2.47 -668.69 -1.65 -29.68 16 18 C -0.24 -13.05 9.55 84.03 0.80 -12.25 16 19 H 0.07 3.85 5.25 -2.91 -0.02 3.83 16 20 C -0.01 -0.81 5.48 84.86 0.46 -0.34 16 21 N -0.95 -58.57 13.97 21.65 0.30 -58.27 16 22 Si 0.94 45.84 25.13 68.60 1.72 47.56 16 23 H -0.28 -13.63 6.82 99.48 0.68 -12.95 16 24 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 25 H -0.25 -11.31 6.95 99.48 0.69 -10.62 16 26 H 0.05 1.67 7.79 -2.39 -0.02 1.65 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.70 5.53 -2.39 -0.01 1.68 16 29 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.41 8.93 7.35 -92.71 -0.68 8.25 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 0.86 7.34 -2.39 -0.02 0.84 16 34 H 0.07 0.89 7.11 -2.39 -0.02 0.88 16 35 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 36 H 0.09 1.04 8.10 -2.39 -0.02 1.03 16 37 H 0.10 0.85 7.64 -2.39 -0.02 0.84 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.07 1.59 7.45 -2.39 -0.02 1.58 16 41 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 43 H 0.03 1.35 4.21 -2.38 -0.01 1.34 16 44 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -67.98 342.42 3.35 -64.63 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.25 Total: 19.39 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.98 Total: -2.43 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.56 Total: -108.64 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.51 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.72 Total: 47.56 kcal Total: -67.98 3.35 -64.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087688397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.446 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds