Wall clock time and date at job start Tue Mar 31 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 H 1.09000 * 109.47277 * 305.00232 * 3 2 1 5 5 C 1.53001 * 109.47022 * 65.00365 * 3 2 1 6 6 C 1.50696 * 109.47257 * 185.00284 * 3 2 1 7 7 O 1.21287 * 119.99721 * 339.63789 * 6 3 2 8 8 N 1.34778 * 120.00462 * 159.64010 * 6 3 2 9 9 C 1.47637 * 125.73548 * 175.23638 * 8 6 3 10 10 C 1.55917 * 104.41944 * 155.04293 * 9 8 6 11 11 H 1.08991 * 112.88403 * 158.83555 * 10 9 8 12 12 C 1.53064 * 106.85580 * 283.02584 * 10 9 8 13 13 C 1.52785 * 110.81012 * 163.75016 * 12 10 9 14 14 N 1.47447 * 107.14570 * 301.12825 * 13 12 10 15 15 C 1.36932 * 121.96599 * 238.39009 * 14 13 12 16 16 H 1.07994 * 120.00177 * 27.92951 * 15 14 13 17 17 C 1.38809 * 119.99839 * 207.93266 * 15 14 13 18 18 N 1.31622 * 120.00009 * 19.12135 * 17 15 14 19 19 Si 1.86799 * 120.00046 * 199.12513 * 17 15 14 20 20 H 1.48490 * 109.47160 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47083 * 119.99918 * 19 17 15 22 22 H 1.48506 * 109.47036 * 239.99569 * 19 17 15 23 23 C 1.46718 * 116.69361 * 59.64665 * 14 13 12 24 24 C 1.50980 * 111.06166 * 306.40968 * 23 14 13 25 25 H 1.09005 * 108.99123 * 167.67815 * 24 23 14 26 26 C 1.47464 * 125.72645 * 355.25685 * 8 6 3 27 27 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46865 * 299.99686 * 1 2 3 29 29 H 1.08996 * 109.46921 * 59.99560 * 1 2 3 30 30 H 1.09003 * 109.46865 * 240.00314 * 2 1 3 31 31 H 1.08996 * 109.46921 * 120.00440 * 2 1 3 32 32 H 1.08997 * 109.47121 * 171.75165 * 5 3 2 33 33 H 1.09004 * 109.47202 * 291.74785 * 5 3 2 34 34 H 1.08996 * 109.47577 * 51.75171 * 5 3 2 35 35 H 1.09003 * 110.44179 * 36.30973 * 9 8 6 36 36 H 1.08998 * 110.44703 * 273.78131 * 9 8 6 37 37 H 1.09003 * 109.21379 * 284.08947 * 12 10 9 38 38 H 1.08994 * 109.21453 * 43.45572 * 12 10 9 39 39 H 1.09000 * 109.78894 * 61.84441 * 13 12 10 40 40 H 1.08993 * 109.79827 * 182.69602 * 13 12 10 41 41 H 0.97001 * 119.99755 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.16284 * 185.99985 * 23 14 13 43 43 H 1.08998 * 109.16095 * 66.81324 * 23 14 13 44 44 H 1.09006 * 110.05444 * 61.30090 * 26 8 6 45 45 H 1.08990 * 110.06222 * 299.78966 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5419 1.4444 -0.1239 7 8 4.1752 0.4501 0.1617 8 7 4.1815 2.5508 -0.5520 9 6 5.6455 2.7261 -0.6263 10 6 5.8513 3.8113 -1.7268 11 1 6.8160 4.3130 -1.6521 12 6 5.6549 3.1172 -3.0768 13 6 5.4377 4.1429 -4.1880 14 7 4.2468 4.9325 -3.8240 15 6 3.1476 5.0034 -4.6373 16 1 2.9159 4.1864 -5.3045 17 6 2.3310 6.1255 -4.6044 18 7 2.7841 7.2545 -4.1019 19 14 0.5892 6.0331 -5.2729 20 1 0.3251 4.6621 -5.7784 21 1 -0.3744 6.3563 -4.1902 22 1 0.4325 7.0079 -6.3822 23 6 4.3054 5.6664 -2.5549 24 6 4.6686 4.7478 -1.4131 25 1 4.9170 5.3496 -0.5388 26 6 3.5364 3.7898 -1.0246 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.1199 3.1006 1.3729 33 1 0.5533 2.2567 1.3296 34 1 1.9444 1.5095 2.1511 35 1 6.1265 1.7923 -0.9177 36 1 6.0363 3.0745 0.3297 37 1 6.5389 2.5220 -3.3060 38 1 4.7861 2.4616 -3.0200 39 1 6.3173 4.7800 -4.2793 40 1 5.2524 3.6308 -5.1321 41 1 2.2133 8.0385 -4.0786 42 1 3.3326 6.1163 -2.3565 43 1 5.0541 6.4548 -2.6317 44 1 2.9349 4.2257 -0.2268 45 1 2.9112 3.5784 -1.8920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087889121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:30 Heat of formation + Delta-G solvation = -28.469836 kcal Electronic energy + Delta-G solvation = -23697.168256 eV Core-core repulsion = 20521.411075 eV Total energy + Delta-G solvation = -3175.757181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.27228 -38.41466 -35.40239 -35.11923 -32.64812 -30.84378 -30.68575 -29.53241 -27.39520 -25.74964 -25.15350 -23.66288 -21.83219 -21.51290 -20.66080 -18.82086 -18.37848 -17.05681 -16.62705 -15.76596 -15.31053 -15.01317 -14.58251 -14.24622 -13.74102 -13.58840 -13.58134 -13.40750 -12.94311 -12.62181 -12.44673 -12.20835 -12.14742 -11.96285 -11.79472 -11.61977 -11.43609 -11.13407 -11.06841 -10.79974 -10.73021 -10.69943 -10.57706 -10.50380 -10.23463 -9.96838 -9.50958 -9.43843 -9.39527 -8.53645 -8.28397 -6.74359 -5.86029 -3.26580 2.88640 3.27168 3.31932 3.41280 3.43041 4.43904 4.60793 4.78938 4.95849 5.01098 5.04915 5.24016 5.32868 5.35567 5.39961 5.43772 5.46843 5.59743 5.64145 5.76015 5.84844 5.86699 5.90945 5.93530 5.95154 6.04209 6.09565 6.15132 6.25881 6.31373 6.34837 6.42435 6.48329 6.56192 6.69221 6.70140 6.81829 6.98912 7.21287 7.52599 7.74862 7.84209 8.36092 8.42769 9.13791 9.76935 10.38520 11.22376 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.006528 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.967219 B = 4288.113799 C = 5482.298798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.109 4.109 4 H 0.095 0.905 5 C -0.139 4.139 6 C 0.533 3.467 7 O -0.556 6.556 8 N -0.612 5.612 9 C 0.106 3.894 10 C -0.087 4.087 11 H 0.089 0.911 12 C -0.125 4.125 13 C 0.140 3.860 14 N -0.587 5.587 15 C -0.247 4.247 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.176 3.824 24 C -0.111 4.111 25 H 0.062 0.938 26 C 0.111 3.889 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.022 0.978 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.089 0.911 43 H 0.023 0.977 44 H 0.059 0.941 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -7.589 8.894 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.131 4.131 4 H 0.113 0.887 5 C -0.197 4.197 6 C 0.322 3.678 7 O -0.435 6.435 8 N -0.345 5.345 9 C -0.016 4.016 10 C -0.106 4.106 11 H 0.107 0.893 12 C -0.164 4.164 13 C 0.014 3.986 14 N -0.310 5.310 15 C -0.376 4.376 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.049 3.951 24 C -0.132 4.132 25 H 0.080 0.920 26 C -0.011 4.011 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.182 -8.035 9.059 12.110 hybrid contribution -0.858 0.243 -0.332 0.952 sum -0.676 -7.792 8.727 11.719 Atomic orbital electron populations 1.21832 0.95525 1.01632 1.02040 1.21342 0.95361 0.94341 1.03083 1.21311 0.91904 0.99053 1.00786 0.88703 1.21739 1.01954 1.00428 0.95556 1.20317 0.89895 0.81370 0.76263 1.90644 1.68795 1.32725 1.51340 1.48707 1.07548 1.14704 1.63549 1.22554 0.81078 0.99531 0.98454 1.22290 0.98594 0.95086 0.94653 0.89282 1.21948 1.00435 0.98730 0.95284 1.20964 0.90208 0.92490 0.94927 1.44136 1.12921 1.55772 1.18135 1.19154 1.00453 0.99395 1.18637 0.91594 1.25012 0.99632 0.94530 1.00372 1.70056 1.34900 0.99767 1.49787 0.86302 0.85091 0.77606 0.78302 1.20220 1.21490 1.21727 1.20119 1.01906 0.90419 0.82616 1.22085 0.93787 0.96660 1.00656 0.91951 1.22072 0.96613 0.83527 0.98913 0.92673 0.92508 0.92508 0.91698 0.91246 0.92156 0.91325 0.92248 0.90927 0.92313 0.93421 0.92089 0.95988 0.92836 0.93643 0.89320 0.95848 0.92230 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 37.16 0.36 -1.20 16 2 C -0.10 -1.29 4.78 -26.73 -0.13 -1.42 16 3 C -0.11 -1.48 2.18 -91.77 -0.20 -1.68 16 4 H 0.09 1.30 7.47 -51.93 -0.39 0.91 16 5 C -0.14 -1.59 8.74 37.16 0.32 -1.27 16 6 C 0.53 8.85 6.99 -10.99 -0.08 8.77 16 7 O -0.56 -10.80 16.37 5.55 0.09 -10.71 16 8 N -0.61 -9.91 2.89 -169.97 -0.49 -10.40 16 9 C 0.11 1.63 6.23 -1.86 -0.01 1.62 16 10 C -0.09 -1.37 3.67 -88.46 -0.32 -1.70 16 11 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 12 C -0.12 -2.14 4.99 -26.81 -0.13 -2.28 16 13 C 0.14 2.81 6.57 -3.63 -0.02 2.79 16 14 N -0.59 -13.70 2.86 -173.64 -0.50 -14.20 16 15 C -0.25 -6.41 9.69 -15.06 -0.15 -6.56 16 16 H 0.07 1.72 7.90 -52.49 -0.41 1.30 16 17 C 0.00 0.09 4.89 -17.43 -0.09 0.00 16 18 N -0.90 -24.85 11.28 55.49 0.63 -24.22 16 19 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.18 3.82 4.64 -4.94 -0.02 3.80 16 24 C -0.11 -1.91 2.70 -90.90 -0.25 -2.15 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 C 0.11 1.83 5.26 -3.35 -0.02 1.81 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.52 6.76 -51.93 -0.35 0.17 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 32 H 0.06 0.70 7.06 -51.93 -0.37 0.34 16 33 H 0.07 0.67 6.99 -51.93 -0.36 0.31 16 34 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 35 H 0.07 1.15 7.85 -51.93 -0.41 0.75 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.16 7.20 -51.93 -0.37 0.79 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 1.08 7.96 -51.93 -0.41 0.66 16 41 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.09 2.16 6.08 -51.93 -0.32 1.84 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.89 7.08 -51.93 -0.37 0.53 16 45 H 0.08 1.60 7.74 -51.93 -0.40 1.20 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -28.99 343.17 -8.80 -37.80 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.94 Total: 0.28 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.73 Total: 0.54 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.36 Total: -48.83 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.99 -8.80 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087889121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.327 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds