Wall clock time and date at job start Tue Mar 31 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 H 1.09000 * 109.47277 * 305.00232 * 3 2 1 5 5 C 1.53001 * 109.47022 * 65.00365 * 3 2 1 6 6 C 1.50696 * 109.47257 * 185.00284 * 3 2 1 7 7 O 1.21287 * 119.99721 * 339.63789 * 6 3 2 8 8 N 1.34778 * 120.00462 * 159.64010 * 6 3 2 9 9 C 1.47637 * 125.73548 * 175.23638 * 8 6 3 10 10 C 1.55917 * 104.41944 * 155.04293 * 9 8 6 11 11 H 1.08991 * 112.88403 * 158.83555 * 10 9 8 12 12 C 1.53064 * 106.85580 * 283.02584 * 10 9 8 13 13 C 1.52785 * 110.81012 * 163.75016 * 12 10 9 14 14 N 1.47447 * 107.14570 * 301.12825 * 13 12 10 15 15 C 1.36932 * 121.96599 * 238.39009 * 14 13 12 16 16 H 1.07994 * 120.00177 * 27.92951 * 15 14 13 17 17 C 1.38809 * 119.99839 * 207.93266 * 15 14 13 18 18 N 1.31622 * 120.00009 * 19.12135 * 17 15 14 19 19 Si 1.86799 * 120.00046 * 199.12513 * 17 15 14 20 20 H 1.48490 * 109.47160 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47083 * 119.99918 * 19 17 15 22 22 H 1.48506 * 109.47036 * 239.99569 * 19 17 15 23 23 C 1.46718 * 116.69361 * 59.64665 * 14 13 12 24 24 C 1.50980 * 111.06166 * 306.40968 * 23 14 13 25 25 H 1.09005 * 108.99123 * 167.67815 * 24 23 14 26 26 C 1.47464 * 125.72645 * 355.25685 * 8 6 3 27 27 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46865 * 299.99686 * 1 2 3 29 29 H 1.08996 * 109.46921 * 59.99560 * 1 2 3 30 30 H 1.09003 * 109.46865 * 240.00314 * 2 1 3 31 31 H 1.08996 * 109.46921 * 120.00440 * 2 1 3 32 32 H 1.08997 * 109.47121 * 171.75165 * 5 3 2 33 33 H 1.09004 * 109.47202 * 291.74785 * 5 3 2 34 34 H 1.08996 * 109.47577 * 51.75171 * 5 3 2 35 35 H 1.09003 * 110.44179 * 36.30973 * 9 8 6 36 36 H 1.08998 * 110.44703 * 273.78131 * 9 8 6 37 37 H 1.09003 * 109.21379 * 284.08947 * 12 10 9 38 38 H 1.08994 * 109.21453 * 43.45572 * 12 10 9 39 39 H 1.09000 * 109.78894 * 61.84441 * 13 12 10 40 40 H 1.08993 * 109.79827 * 182.69602 * 13 12 10 41 41 H 0.97001 * 119.99755 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.16284 * 185.99985 * 23 14 13 43 43 H 1.08998 * 109.16095 * 66.81324 * 23 14 13 44 44 H 1.09006 * 110.05444 * 61.30090 * 26 8 6 45 45 H 1.08990 * 110.06222 * 299.78966 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5419 1.4444 -0.1239 7 8 4.1752 0.4501 0.1617 8 7 4.1815 2.5508 -0.5520 9 6 5.6455 2.7261 -0.6263 10 6 5.8513 3.8113 -1.7268 11 1 6.8160 4.3130 -1.6521 12 6 5.6549 3.1172 -3.0768 13 6 5.4377 4.1429 -4.1880 14 7 4.2468 4.9325 -3.8240 15 6 3.1476 5.0034 -4.6373 16 1 2.9159 4.1864 -5.3045 17 6 2.3310 6.1255 -4.6044 18 7 2.7841 7.2545 -4.1019 19 14 0.5892 6.0331 -5.2729 20 1 0.3251 4.6621 -5.7784 21 1 -0.3744 6.3563 -4.1902 22 1 0.4325 7.0079 -6.3822 23 6 4.3054 5.6664 -2.5549 24 6 4.6686 4.7478 -1.4131 25 1 4.9170 5.3496 -0.5388 26 6 3.5364 3.7898 -1.0246 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.1199 3.1006 1.3729 33 1 0.5533 2.2567 1.3296 34 1 1.9444 1.5095 2.1511 35 1 6.1265 1.7923 -0.9177 36 1 6.0363 3.0745 0.3297 37 1 6.5389 2.5220 -3.3060 38 1 4.7861 2.4616 -3.0200 39 1 6.3173 4.7800 -4.2793 40 1 5.2524 3.6308 -5.1321 41 1 2.2133 8.0385 -4.0786 42 1 3.3326 6.1163 -2.3565 43 1 5.0541 6.4548 -2.6317 44 1 2.9349 4.2257 -0.2268 45 1 2.9112 3.5784 -1.8920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087889121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:30 Heat of formation + Delta-G solvation = -43.669868 kcal Electronic energy + Delta-G solvation = -23697.827379 eV Core-core repulsion = 20521.411075 eV Total energy + Delta-G solvation = -3176.416304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60651 -39.80631 -36.90170 -36.35021 -34.33313 -32.33294 -32.29675 -30.60294 -28.85946 -27.31591 -26.36614 -25.12335 -23.22723 -23.09632 -21.83822 -20.25176 -19.74845 -18.67476 -18.02476 -17.20730 -16.79682 -16.40801 -15.93257 -15.71160 -15.32219 -15.06438 -15.00485 -14.54245 -14.32811 -13.89530 -13.77594 -13.68533 -13.34962 -13.22008 -13.04178 -12.87740 -12.76191 -12.61136 -12.53476 -12.45139 -12.27772 -12.03962 -11.98525 -11.74814 -11.64635 -11.63238 -11.05203 -10.99673 -10.71995 -10.50469 -9.61544 -8.65347 -7.85715 -5.28225 1.46291 1.50449 1.59271 1.59621 2.02391 2.52774 3.26653 3.40383 3.66878 3.71202 3.74773 3.84057 3.92282 3.99186 4.27390 4.35656 4.41273 4.49739 4.54826 4.56992 4.65416 4.67217 4.68345 4.77570 4.87342 4.91856 4.96115 4.97050 5.07303 5.09059 5.14576 5.15072 5.18121 5.19030 5.32037 5.34622 5.41480 5.47801 5.58338 5.66815 5.77295 6.40350 6.53215 7.12929 7.17401 7.87218 8.44042 9.20376 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.006528 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.967219 B = 4288.113799 C = 5482.298798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.108 4.108 4 H 0.091 0.909 5 C -0.134 4.134 6 C 0.527 3.473 7 O -0.587 6.587 8 N -0.612 5.612 9 C 0.109 3.891 10 C -0.080 4.080 11 H 0.112 0.888 12 C -0.113 4.113 13 C 0.137 3.863 14 N -0.603 5.603 15 C -0.253 4.253 16 H 0.059 0.941 17 C -0.041 4.041 18 N -0.929 5.929 19 Si 0.955 3.045 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.295 1.295 23 C 0.188 3.812 24 C -0.108 4.108 25 H 0.086 0.914 26 C 0.122 3.878 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.251 0.749 42 H 0.059 0.941 43 H 0.003 0.997 44 H 0.078 0.922 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -8.179 10.146 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.129 4.129 4 H 0.109 0.891 5 C -0.192 4.192 6 C 0.317 3.683 7 O -0.469 6.469 8 N -0.345 5.345 9 C -0.013 4.013 10 C -0.099 4.099 11 H 0.131 0.869 12 C -0.152 4.152 13 C 0.012 3.988 14 N -0.327 5.327 15 C -0.383 4.383 16 H 0.077 0.923 17 C -0.237 4.237 18 N -0.575 5.575 19 Si 0.784 3.216 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.223 1.223 23 C 0.061 3.939 24 C -0.128 4.128 25 H 0.104 0.896 26 C 0.000 4.000 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.096 0.904 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.020 -8.638 10.311 13.451 hybrid contribution -0.724 0.408 -0.783 1.141 sum -0.744 -8.230 9.528 12.612 Atomic orbital electron populations 1.21800 0.93455 1.02612 1.02615 1.21320 0.97095 0.93450 1.02005 1.21379 0.89714 0.99931 1.01891 0.89073 1.21734 1.03269 0.99978 0.94180 1.20885 0.91101 0.80795 0.75477 1.90624 1.69711 1.33683 1.52844 1.48762 1.08076 1.14498 1.63128 1.22595 0.80572 0.99050 0.99116 1.22309 0.98980 0.94772 0.93834 0.86950 1.21792 1.00570 0.97736 0.95142 1.21075 0.89135 0.92714 0.95862 1.44351 1.13476 1.56152 1.18677 1.19339 1.01491 0.98996 1.18501 0.92324 1.25610 1.02585 0.94264 1.01268 1.70176 1.35830 1.00188 1.51340 0.85397 0.81305 0.77453 0.77458 1.19613 1.21195 1.22262 1.19896 0.99656 0.90787 0.83535 1.21907 0.94771 0.96625 0.99513 0.89620 1.21875 0.96137 0.83547 0.98475 0.91575 0.91092 0.92702 0.93438 0.91692 0.92320 0.89268 0.91977 0.91372 0.90238 0.90977 0.94195 0.95500 0.93582 0.94022 0.92278 0.97914 0.90390 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.67 71.99 0.70 -2.02 16 2 C -0.10 -2.43 4.78 30.60 0.15 -2.28 16 3 C -0.11 -2.79 2.18 -11.54 -0.03 -2.82 16 4 H 0.09 2.43 7.47 -2.39 -0.02 2.41 16 5 C -0.13 -2.77 8.74 71.98 0.63 -2.14 16 6 C 0.53 17.00 6.99 87.66 0.61 17.61 16 7 O -0.59 -22.43 16.37 -3.05 -0.05 -22.48 16 8 N -0.61 -18.92 2.89 -810.04 -2.34 -21.26 16 9 C 0.11 3.06 6.23 87.17 0.54 3.61 16 10 C -0.08 -2.33 3.67 -9.40 -0.03 -2.37 16 11 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 12 C -0.11 -3.74 4.99 30.54 0.15 -3.58 16 13 C 0.14 5.46 6.57 86.13 0.57 6.02 16 14 N -0.60 -28.41 2.86 -703.28 -2.01 -30.42 16 15 C -0.25 -13.33 9.69 84.03 0.81 -12.51 16 16 H 0.06 3.11 7.90 -2.91 -0.02 3.09 16 17 C -0.04 -2.20 4.89 84.86 0.41 -1.78 16 18 N -0.93 -52.16 11.28 21.65 0.24 -51.92 16 19 Si 0.96 43.11 29.59 68.60 2.03 45.14 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 23 C 0.19 8.17 4.64 85.68 0.40 8.57 16 24 C -0.11 -3.54 2.70 -10.98 -0.03 -3.57 16 25 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 26 C 0.12 3.89 5.26 86.30 0.45 4.34 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.11 6.76 -2.39 -0.02 1.09 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 32 H 0.06 1.23 7.06 -2.39 -0.02 1.21 16 33 H 0.09 1.48 6.99 -2.38 -0.02 1.46 16 34 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 35 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.49 7.20 -2.39 -0.02 1.47 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.86 7.96 -2.39 -0.02 1.84 16 41 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 42 H 0.06 2.92 6.08 -2.39 -0.01 2.91 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.08 2.20 7.08 -2.38 -0.02 2.18 16 45 H 0.06 2.13 7.74 -2.39 -0.02 2.11 16 Total: -1.00 -62.78 343.17 4.15 -58.63 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.94 Total: 15.22 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 5.34 Total: 7.09 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.11 Total: -103.60 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -62.78 4.15 -58.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087889121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.964 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds