Wall clock time and date at job start Tue Mar 31 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50700 * 120.00119 * 2 1 4 4 C 1.32991 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.47105 * 119.99920 * 352.75775 * 4 2 1 6 6 O 1.21621 * 119.99932 * 352.51341 * 5 4 2 7 7 N 1.34777 * 120.00249 * 172.50904 * 5 4 2 8 8 C 1.47139 * 120.18403 * 353.52438 * 7 5 4 9 9 C 1.53623 * 107.51779 * 107.87366 * 8 7 5 10 10 C 1.53490 * 108.46178 * 69.78000 * 9 8 7 11 11 C 1.52468 * 109.14894 * 245.78095 * 10 9 8 12 12 C 1.53119 * 109.67221 * 43.92896 * 11 10 9 13 13 C 1.53443 * 109.34732 * 77.03447 * 12 11 10 14 14 H 1.08999 * 109.62871 * 47.55427 * 13 12 11 15 15 N 1.46500 * 109.63222 * 167.95220 * 13 12 11 16 16 C 1.36936 * 119.99719 * 205.00036 * 15 13 12 17 17 H 1.07997 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99835 * 179.72026 * 16 15 13 19 19 N 1.31612 * 119.99995 * 180.27603 * 18 16 15 20 20 Si 1.86798 * 120.00047 * 0.27732 * 18 16 15 21 21 H 1.48499 * 109.47143 * 89.99636 * 20 18 16 22 22 H 1.48498 * 109.47074 * 209.99728 * 20 18 16 23 23 H 1.48499 * 109.46959 * 329.99846 * 20 18 16 24 24 C 1.46058 * 120.18833 * 173.53981 * 7 5 4 25 25 H 1.08999 * 109.47383 * 264.10516 * 1 2 3 26 26 H 1.09002 * 109.47047 * 24.10045 * 1 2 3 27 27 H 1.09001 * 109.47573 * 144.10454 * 1 2 3 28 28 H 1.08998 * 109.46901 * 240.00090 * 3 2 1 29 29 H 1.09003 * 109.46706 * 0.02562 * 3 2 1 30 30 H 1.08995 * 109.46932 * 120.00338 * 3 2 1 31 31 H 1.07999 * 120.00427 * 172.75598 * 4 2 1 32 32 H 1.09000 * 109.84629 * 348.37517 * 8 7 5 33 33 H 1.08995 * 109.89988 * 227.40947 * 8 7 5 34 34 H 1.08997 * 109.64389 * 310.08612 * 9 8 7 35 35 H 1.08999 * 109.63409 * 189.47049 * 9 8 7 36 36 H 1.09002 * 109.52370 * 125.88283 * 10 9 8 37 37 H 1.08996 * 109.52592 * 5.68500 * 10 9 8 38 38 H 1.08993 * 109.43977 * 283.86972 * 11 10 9 39 39 H 1.09004 * 109.43821 * 163.98801 * 11 10 9 40 40 H 1.08997 * 109.49339 * 317.07744 * 12 11 10 41 41 H 1.08997 * 109.51644 * 197.00592 * 12 11 10 42 42 H 0.96994 * 119.99940 * 24.99221 * 15 13 12 43 43 H 0.97002 * 120.00092 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.36272 * 172.83199 * 24 7 5 45 45 H 1.09000 * 109.35775 * 53.23392 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4452 -2.4207 0.1595 6 8 0.2590 -2.4124 0.4279 7 7 2.0938 -3.5924 0.0087 8 6 3.4903 -3.6107 -0.4544 9 6 4.3704 -3.9925 0.7454 10 6 4.1131 -5.4665 1.0875 11 6 3.4572 -5.5540 2.4611 12 6 2.3621 -4.4902 2.5781 13 6 1.1195 -4.9528 1.8058 14 1 0.8890 -5.9855 2.0678 15 7 -0.0180 -4.0936 2.1434 16 6 -1.2961 -4.5682 2.0157 17 1 -1.4655 -5.5758 1.6658 18 6 -2.3738 -3.7560 2.3411 19 7 -3.6021 -4.2140 2.2235 20 14 -2.0807 -2.0130 2.9457 21 1 -2.0504 -1.0855 1.7864 22 1 -3.1762 -1.6180 3.8671 23 1 -0.7826 -1.9500 3.6641 24 6 1.4144 -4.8513 0.3037 25 1 -0.3634 -0.1055 1.0222 26 1 -0.3633 0.9381 -0.4196 27 1 -0.3634 -0.8325 -0.6025 28 1 2.8872 1.3628 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2455 -1.1555 -0.1184 32 1 3.7717 -2.6234 -0.8205 33 1 3.6080 -4.3474 -1.2491 34 1 4.1144 -3.3677 1.6011 35 1 5.4205 -3.8540 0.4881 36 1 5.0590 -6.0079 1.1004 37 1 3.4519 -5.9040 0.3396 38 1 4.2085 -5.3875 3.2331 39 1 3.0176 -6.5429 2.5909 40 1 2.7216 -3.5504 2.1592 41 1 2.1052 -4.3460 3.6275 42 1 0.1342 -3.1886 2.4574 43 1 -4.3552 -3.6463 2.4505 44 1 2.0500 -5.6841 0.0031 45 1 0.4777 -4.8952 -0.2521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088253505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:55 Heat of formation + Delta-G solvation = 23.653834 kcal Electronic energy + Delta-G solvation = -24376.584554 eV Core-core repulsion = 21203.087625 eV Total energy + Delta-G solvation = -3173.496929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17393 -37.70316 -35.17348 -34.72924 -33.59328 -31.82605 -29.81712 -28.52863 -27.57160 -26.66502 -26.25214 -23.54690 -22.55027 -21.03317 -20.08750 -18.90280 -17.56442 -17.30741 -16.64525 -15.79100 -15.16625 -15.12575 -14.37176 -14.13986 -13.88818 -13.74917 -13.49678 -13.45456 -13.26119 -12.60935 -12.37422 -12.29263 -11.98536 -11.86863 -11.84595 -11.76346 -11.40878 -11.23596 -11.06328 -10.83198 -10.62942 -10.49991 -10.35367 -10.07967 -9.80850 -9.68725 -9.31719 -8.88268 -8.78176 -8.65912 -7.99371 -6.82537 -5.49889 -2.79434 1.70431 3.53655 3.61484 3.65738 3.71407 3.88624 4.76707 4.84339 4.90628 4.93950 4.98289 5.12418 5.22768 5.34140 5.42166 5.45917 5.47223 5.51530 5.61056 5.72055 5.76707 5.77415 5.83261 5.87069 5.91398 6.04541 6.14996 6.17920 6.21010 6.22531 6.34015 6.37506 6.40720 6.56862 6.67141 6.73692 6.83121 6.85776 6.96430 7.26652 8.03079 8.24445 8.68848 8.97109 9.52437 10.27150 10.46967 11.69261 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.009587 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.436965 B = 2919.816677 C = 4517.672473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.044 4.044 3 C -0.123 4.123 4 C -0.236 4.236 5 C 0.524 3.476 6 O -0.476 6.476 7 N -0.607 5.607 8 C 0.108 3.892 9 C -0.148 4.148 10 C -0.128 4.128 11 C -0.113 4.113 12 C -0.139 4.139 13 C 0.171 3.829 14 H 0.060 0.940 15 N -0.728 5.728 16 C -0.219 4.219 17 H 0.083 0.917 18 C 0.004 3.996 19 N -0.946 5.946 20 Si 0.896 3.104 21 H -0.274 1.274 22 H -0.307 1.307 23 H -0.288 1.288 24 C 0.092 3.908 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.364 0.636 43 H 0.253 0.747 44 H 0.069 0.931 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.904 4.892 -5.627 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.045 4.045 3 C -0.180 4.180 4 C -0.257 4.257 5 C 0.313 3.687 6 O -0.350 6.350 7 N -0.342 5.342 8 C -0.015 4.015 9 C -0.186 4.186 10 C -0.165 4.165 11 C -0.151 4.151 12 C -0.177 4.177 13 C 0.060 3.940 14 H 0.077 0.923 15 N -0.370 5.370 16 C -0.350 4.350 17 H 0.100 0.900 18 C -0.190 4.190 19 N -0.596 5.596 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.235 1.235 23 H -0.215 1.215 24 C -0.033 4.033 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.198 0.802 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.022 4.750 -5.516 20.367 hybrid contribution 0.363 1.201 0.358 1.305 sum 19.385 5.951 -5.158 20.924 Atomic orbital electron populations 1.21259 0.90655 1.02052 1.04236 1.22527 0.96953 0.94258 0.90807 1.20967 1.00090 0.94647 1.02307 1.22560 0.99775 0.92941 1.10425 1.18514 0.87399 0.83741 0.79050 1.90987 1.13837 1.86310 1.43897 1.47814 1.12217 1.06561 1.67601 1.21934 0.81867 1.01915 0.95799 1.22496 0.98828 0.97717 0.99531 1.21896 1.00162 0.96097 0.98373 1.21448 0.97644 0.99629 0.96407 1.22259 0.95648 0.99294 1.00506 1.20754 0.87012 0.95219 0.91050 0.92257 1.42691 1.01658 1.13257 1.79438 1.18944 0.81545 0.98576 1.35892 0.89955 1.24514 0.94897 0.97548 1.02070 1.69728 0.97243 1.36267 1.56321 0.86384 0.75312 0.87386 0.78042 1.20074 1.23549 1.21468 1.22600 0.96733 0.83689 1.00251 0.90096 0.93306 0.89001 0.91103 0.91468 0.90939 0.86283 0.90298 0.91345 0.90187 0.91928 0.92726 0.90763 0.92820 0.91984 0.90842 0.92522 0.80179 0.93678 0.91325 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.42 36.01 0.30 -1.87 16 2 C -0.04 -0.62 6.11 -101.17 -0.62 -1.24 16 3 C -0.12 -1.25 10.06 36.01 0.36 -0.89 16 4 C -0.24 -3.42 8.78 -37.81 -0.33 -3.75 16 5 C 0.52 9.48 6.49 -12.66 -0.08 9.40 16 6 O -0.48 -10.90 9.13 5.26 0.05 -10.85 16 7 N -0.61 -9.44 1.72 -174.28 -0.30 -9.74 16 8 C 0.11 1.19 5.74 -3.37 -0.02 1.17 16 9 C -0.15 -1.50 5.60 -26.15 -0.15 -1.64 16 10 C -0.13 -1.37 5.48 -26.75 -0.15 -1.51 16 11 C -0.11 -1.42 5.67 -26.94 -0.15 -1.58 16 12 C -0.14 -2.26 4.92 -26.44 -0.13 -2.39 16 13 C 0.17 3.36 2.68 -67.49 -0.18 3.18 16 14 H 0.06 1.20 7.83 -51.93 -0.41 0.80 16 15 N -0.73 -18.23 2.87 -53.00 -0.15 -18.38 16 16 C -0.22 -6.52 10.36 -15.06 -0.16 -6.68 16 17 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 19 N -0.95 -31.54 13.97 55.49 0.78 -30.76 16 20 Si 0.90 24.77 26.74 -169.99 -4.54 20.23 16 21 H -0.27 -7.45 6.01 56.52 0.34 -7.11 16 22 H -0.31 -8.62 7.11 56.52 0.40 -8.22 16 23 H -0.29 -7.72 6.51 56.52 0.37 -7.35 16 24 C 0.09 1.61 4.91 -4.07 -0.02 1.59 16 25 H 0.08 1.62 6.72 -51.93 -0.35 1.27 16 26 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 27 H 0.09 1.82 6.21 -51.93 -0.32 1.50 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.63 7.87 -51.93 -0.41 0.23 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.12 1.35 6.22 -52.49 -0.33 1.02 16 32 H 0.08 0.76 5.64 -51.93 -0.29 0.46 16 33 H 0.07 0.68 7.97 -51.93 -0.41 0.26 16 34 H 0.08 0.94 5.45 -51.93 -0.28 0.66 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.83 4.49 -51.93 -0.23 0.60 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 40 H 0.07 1.19 3.68 -51.93 -0.19 1.00 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.36 9.45 4.43 -40.82 -0.18 9.27 16 43 H 0.25 8.13 8.31 -40.82 -0.34 7.79 16 44 H 0.07 0.99 5.07 -51.93 -0.26 0.73 16 45 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -34.78 325.42 -7.78 -42.56 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.10 Total: 8.22 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.41 Total: -6.18 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.32 Total: -58.89 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.05 Total: -10.85 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.54 Total: 20.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.78 -7.78 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088253505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.215 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds