Wall clock time and date at job start Tue Mar 31 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50700 * 120.00119 * 2 1 4 4 C 1.32991 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.47105 * 119.99920 * 352.75775 * 4 2 1 6 6 O 1.21621 * 119.99932 * 352.51341 * 5 4 2 7 7 N 1.34777 * 120.00249 * 172.50904 * 5 4 2 8 8 C 1.47139 * 120.18403 * 353.52438 * 7 5 4 9 9 C 1.53623 * 107.51779 * 107.87366 * 8 7 5 10 10 C 1.53490 * 108.46178 * 69.78000 * 9 8 7 11 11 C 1.52468 * 109.14894 * 245.78095 * 10 9 8 12 12 C 1.53119 * 109.67221 * 43.92896 * 11 10 9 13 13 C 1.53443 * 109.34732 * 77.03447 * 12 11 10 14 14 H 1.08999 * 109.62871 * 47.55427 * 13 12 11 15 15 N 1.46500 * 109.63222 * 167.95220 * 13 12 11 16 16 C 1.36936 * 119.99719 * 205.00036 * 15 13 12 17 17 H 1.07997 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99835 * 179.72026 * 16 15 13 19 19 N 1.31612 * 119.99995 * 180.27603 * 18 16 15 20 20 Si 1.86798 * 120.00047 * 0.27732 * 18 16 15 21 21 H 1.48499 * 109.47143 * 89.99636 * 20 18 16 22 22 H 1.48498 * 109.47074 * 209.99728 * 20 18 16 23 23 H 1.48499 * 109.46959 * 329.99846 * 20 18 16 24 24 C 1.46058 * 120.18833 * 173.53981 * 7 5 4 25 25 H 1.08999 * 109.47383 * 264.10516 * 1 2 3 26 26 H 1.09002 * 109.47047 * 24.10045 * 1 2 3 27 27 H 1.09001 * 109.47573 * 144.10454 * 1 2 3 28 28 H 1.08998 * 109.46901 * 240.00090 * 3 2 1 29 29 H 1.09003 * 109.46706 * 0.02562 * 3 2 1 30 30 H 1.08995 * 109.46932 * 120.00338 * 3 2 1 31 31 H 1.07999 * 120.00427 * 172.75598 * 4 2 1 32 32 H 1.09000 * 109.84629 * 348.37517 * 8 7 5 33 33 H 1.08995 * 109.89988 * 227.40947 * 8 7 5 34 34 H 1.08997 * 109.64389 * 310.08612 * 9 8 7 35 35 H 1.08999 * 109.63409 * 189.47049 * 9 8 7 36 36 H 1.09002 * 109.52370 * 125.88283 * 10 9 8 37 37 H 1.08996 * 109.52592 * 5.68500 * 10 9 8 38 38 H 1.08993 * 109.43977 * 283.86972 * 11 10 9 39 39 H 1.09004 * 109.43821 * 163.98801 * 11 10 9 40 40 H 1.08997 * 109.49339 * 317.07744 * 12 11 10 41 41 H 1.08997 * 109.51644 * 197.00592 * 12 11 10 42 42 H 0.96994 * 119.99940 * 24.99221 * 15 13 12 43 43 H 0.97002 * 120.00092 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.36272 * 172.83199 * 24 7 5 45 45 H 1.09000 * 109.35775 * 53.23392 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4452 -2.4207 0.1595 6 8 0.2590 -2.4124 0.4279 7 7 2.0938 -3.5924 0.0087 8 6 3.4903 -3.6107 -0.4544 9 6 4.3704 -3.9925 0.7454 10 6 4.1131 -5.4665 1.0875 11 6 3.4572 -5.5540 2.4611 12 6 2.3621 -4.4902 2.5781 13 6 1.1195 -4.9528 1.8058 14 1 0.8890 -5.9855 2.0678 15 7 -0.0180 -4.0936 2.1434 16 6 -1.2961 -4.5682 2.0157 17 1 -1.4655 -5.5758 1.6658 18 6 -2.3738 -3.7560 2.3411 19 7 -3.6021 -4.2140 2.2235 20 14 -2.0807 -2.0130 2.9457 21 1 -2.0504 -1.0855 1.7864 22 1 -3.1762 -1.6180 3.8671 23 1 -0.7826 -1.9500 3.6641 24 6 1.4144 -4.8513 0.3037 25 1 -0.3634 -0.1055 1.0222 26 1 -0.3633 0.9381 -0.4196 27 1 -0.3634 -0.8325 -0.6025 28 1 2.8872 1.3628 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2455 -1.1555 -0.1184 32 1 3.7717 -2.6234 -0.8205 33 1 3.6080 -4.3474 -1.2491 34 1 4.1144 -3.3677 1.6011 35 1 5.4205 -3.8540 0.4881 36 1 5.0590 -6.0079 1.1004 37 1 3.4519 -5.9040 0.3396 38 1 4.2085 -5.3875 3.2331 39 1 3.0176 -6.5429 2.5909 40 1 2.7216 -3.5504 2.1592 41 1 2.1052 -4.3460 3.6275 42 1 0.1342 -3.1886 2.4574 43 1 -4.3552 -3.6463 2.4505 44 1 2.0500 -5.6841 0.0031 45 1 0.4777 -4.8952 -0.2521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088253505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:54 Heat of formation + Delta-G solvation = 1.170029 kcal Electronic energy + Delta-G solvation = -24377.559525 eV Core-core repulsion = 21203.087625 eV Total energy + Delta-G solvation = -3174.471900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46429 -38.97022 -36.59774 -36.15786 -34.90613 -33.78278 -31.57934 -29.74279 -28.65602 -27.98603 -27.47478 -25.22195 -23.94936 -22.48374 -21.20831 -20.32236 -19.43561 -18.75318 -17.84472 -17.07675 -16.74372 -16.44832 -16.06512 -15.55948 -15.25848 -14.97073 -14.75533 -14.69977 -14.45770 -14.33570 -13.69222 -13.54583 -13.43762 -13.22655 -13.09463 -13.02138 -12.72763 -12.69164 -12.41355 -12.28665 -12.23992 -11.88017 -11.80814 -11.71513 -11.45239 -11.12725 -10.99505 -10.83776 -10.17779 -9.99113 -9.50254 -8.85052 -7.94761 -5.18089 0.55020 1.30811 1.42166 1.47398 2.34356 2.56457 2.57419 3.39559 3.63170 3.81362 3.91645 3.99461 4.04533 4.16045 4.24376 4.28322 4.38069 4.48273 4.55087 4.60188 4.66269 4.67768 4.73197 4.80335 4.87497 4.90055 4.92577 4.98869 5.08160 5.12939 5.16932 5.22012 5.27484 5.44259 5.45504 5.53622 5.55832 5.67380 5.71673 5.81194 5.95171 6.30293 6.78819 7.21249 7.65023 8.04157 8.19155 9.28100 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.009587 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.436965 B = 2919.816677 C = 4517.672473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.043 4.043 3 C -0.117 4.117 4 C -0.237 4.237 5 C 0.509 3.491 6 O -0.539 6.539 7 N -0.603 5.603 8 C 0.102 3.898 9 C -0.141 4.141 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.128 4.128 13 C 0.159 3.841 14 H 0.046 0.954 15 N -0.730 5.730 16 C -0.193 4.193 17 H 0.052 0.948 18 C -0.066 4.066 19 N -0.994 5.994 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.312 1.312 23 H -0.276 1.276 24 C 0.106 3.894 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.361 0.639 43 H 0.250 0.750 44 H 0.107 0.893 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.958 6.347 -6.309 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 C -0.173 4.173 4 C -0.257 4.257 5 C 0.300 3.700 6 O -0.417 6.417 7 N -0.336 5.336 8 C -0.019 4.019 9 C -0.179 4.179 10 C -0.163 4.163 11 C -0.146 4.146 12 C -0.166 4.166 13 C 0.050 3.950 14 H 0.064 0.936 15 N -0.372 5.372 16 C -0.325 4.325 17 H 0.070 0.930 18 C -0.256 4.256 19 N -0.648 5.648 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.240 1.240 23 H -0.203 1.203 24 C -0.020 4.020 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.179 0.821 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.195 0.805 43 H 0.058 0.942 44 H 0.125 0.875 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 24.199 6.182 -6.219 25.739 hybrid contribution -1.135 0.622 0.490 1.385 sum 23.064 6.805 -5.729 24.720 Atomic orbital electron populations 1.21119 0.93619 1.01780 1.01585 1.22775 0.95211 0.96551 0.89937 1.21010 1.00180 0.91899 1.04199 1.22669 1.01406 0.90845 1.10804 1.19315 0.87043 0.85534 0.78084 1.90964 1.16591 1.87327 1.46840 1.47915 1.14082 1.04994 1.66631 1.22320 0.78767 1.04025 0.96814 1.22439 1.00482 0.96672 0.98294 1.21888 1.00969 0.97035 0.96372 1.21418 0.96691 0.97771 0.98714 1.22173 0.94943 1.01014 0.98486 1.21084 0.86937 0.93723 0.93237 0.93555 1.42707 1.01337 1.13652 1.79531 1.18946 0.83754 0.96967 1.32794 0.93017 1.25203 0.94770 1.01538 1.04098 1.69889 0.98107 1.37690 1.59090 0.85308 0.75163 0.82776 0.77293 1.20065 1.24048 1.20261 1.22198 0.95882 0.86377 0.97498 0.93517 0.90998 0.92486 0.88452 0.90953 0.89388 0.82092 0.88034 0.89553 0.91548 0.88437 0.90058 0.91566 0.90945 0.92397 0.90157 0.94477 0.80533 0.94165 0.87504 0.96049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.42 71.24 0.60 -3.73 16 2 C -0.04 -1.12 6.11 -17.62 -0.11 -1.23 16 3 C -0.12 -1.86 10.06 71.24 0.72 -1.14 16 4 C -0.24 -6.18 8.78 23.43 0.21 -5.97 16 5 C 0.51 18.10 6.49 86.57 0.56 18.66 16 6 O -0.54 -25.53 9.13 -4.10 -0.04 -25.57 16 7 N -0.60 -17.75 1.72 -823.56 -1.42 -19.17 16 8 C 0.10 1.78 5.74 86.47 0.50 2.28 16 9 C -0.14 -2.10 5.60 30.97 0.17 -1.93 16 10 C -0.13 -2.09 5.48 30.58 0.17 -1.92 16 11 C -0.11 -2.39 5.67 30.46 0.17 -2.21 16 12 C -0.13 -4.01 4.92 30.78 0.15 -3.86 16 13 C 0.16 6.37 2.68 45.28 0.12 6.49 16 14 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 15 N -0.73 -37.92 2.87 -321.58 -0.92 -38.84 16 16 C -0.19 -12.11 10.36 84.03 0.87 -11.24 16 17 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 18 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 19 N -0.99 -69.81 13.97 21.65 0.30 -69.51 16 20 Si 0.96 54.20 26.74 68.60 1.83 56.04 16 21 H -0.27 -15.27 6.01 99.48 0.60 -14.68 16 22 H -0.31 -17.56 7.11 99.48 0.71 -16.86 16 23 H -0.28 -14.74 6.51 99.48 0.65 -14.10 16 24 C 0.11 3.71 4.91 86.60 0.43 4.14 16 25 H 0.05 1.93 6.72 -2.39 -0.02 1.91 16 26 H 0.07 2.04 7.94 -2.39 -0.02 2.02 16 27 H 0.06 2.37 6.21 -2.39 -0.01 2.36 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.10 7.87 -2.39 -0.02 1.08 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.16 2.75 6.22 -2.91 -0.02 2.74 16 32 H 0.10 1.36 5.64 -2.39 -0.01 1.35 16 33 H 0.09 1.27 7.97 -2.39 -0.02 1.25 16 34 H 0.07 1.24 5.45 -2.39 -0.01 1.23 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.21 4.49 -2.39 -0.01 1.20 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.34 7.85 -2.39 -0.02 1.32 16 40 H 0.08 2.43 3.68 -2.39 -0.01 2.42 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.36 19.22 4.43 -92.71 -0.41 18.81 16 43 H 0.25 16.86 8.31 -92.71 -0.77 16.09 16 44 H 0.11 2.91 5.07 -2.39 -0.01 2.90 16 45 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 Total: -1.00 -83.69 325.42 5.19 -78.50 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.41 Total: 24.13 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.02 Total: -5.57 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -2.04 Total: -127.52 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.04 Total: -25.57 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 1.83 Total: 56.04 kcal Total: -83.69 5.19 -78.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088253505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.667 kcal (2) G-P(sol) polarization free energy of solvation -83.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds