Wall clock time and date at job start Tue Mar 31 2020 02:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50705 * 120.00009 * 2 1 4 4 C 1.33000 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99899 * 352.30124 * 4 2 1 6 6 O 1.21611 * 119.99712 * 353.19217 * 5 4 2 7 7 N 1.34777 * 119.99767 * 173.19248 * 5 4 2 8 8 C 1.47134 * 120.17506 * 358.65104 * 7 5 4 9 9 C 1.53631 * 107.51571 * 252.13774 * 8 7 5 10 10 C 1.53488 * 108.42970 * 290.23300 * 9 8 7 11 11 C 1.52458 * 109.15167 * 114.21439 * 10 9 8 12 12 C 1.53115 * 109.68170 * 316.06265 * 11 10 9 13 13 C 1.53131 * 109.35982 * 282.99265 * 12 11 10 14 14 H 1.08994 * 109.48615 * 312.56576 * 13 12 11 15 15 N 1.46498 * 109.62564 * 192.06127 * 13 12 11 16 16 C 1.36937 * 119.99695 * 161.02982 * 15 13 12 17 17 H 1.07992 * 120.00267 * 6.13440 * 16 15 13 18 18 C 1.38819 * 119.99768 * 186.14317 * 16 15 13 19 19 N 1.31618 * 119.99916 * 186.92458 * 18 16 15 20 20 Si 1.86797 * 119.99967 * 6.92247 * 18 16 15 21 21 H 1.48495 * 109.47124 * 88.68681 * 20 18 16 22 22 H 1.48504 * 109.46901 * 208.69086 * 20 18 16 23 23 H 1.48503 * 109.47044 * 328.68459 * 20 18 16 24 24 C 1.46068 * 120.16946 * 178.62545 * 7 5 4 25 25 H 1.08999 * 109.46963 * 264.02943 * 1 2 3 26 26 H 1.08993 * 109.47503 * 24.03385 * 1 2 3 27 27 H 1.09008 * 109.47083 * 144.03150 * 1 2 3 28 28 H 1.09007 * 109.47031 * 239.99874 * 3 2 1 29 29 H 1.09000 * 109.46661 * 359.97438 * 3 2 1 30 30 H 1.08991 * 109.47079 * 119.99654 * 3 2 1 31 31 H 1.08002 * 119.99931 * 172.30309 * 4 2 1 32 32 H 1.08999 * 109.84920 * 11.63906 * 8 7 5 33 33 H 1.08994 * 109.84920 * 132.62966 * 8 7 5 34 34 H 1.08995 * 109.64311 * 49.91659 * 9 8 7 35 35 H 1.09004 * 109.63727 * 170.34227 * 9 8 7 36 36 H 1.08995 * 109.52474 * 234.11908 * 10 9 8 37 37 H 1.09003 * 109.52318 * 354.31055 * 10 9 8 38 38 H 1.09000 * 109.43679 * 76.12983 * 11 10 9 39 39 H 1.08998 * 109.43508 * 196.04488 * 11 10 9 40 40 H 1.09001 * 109.49140 * 42.90720 * 12 11 10 41 41 H 1.09001 * 109.49797 * 162.95408 * 12 11 10 42 42 H 0.96993 * 120.00152 * 341.02754 * 15 13 12 43 43 H 0.96999 * 120.00038 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.36052 * 187.16264 * 24 7 5 45 45 H 1.08998 * 109.36191 * 306.89334 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4465 -2.4199 0.1717 6 8 0.2595 -2.4104 0.4361 7 7 2.0973 -3.5923 0.0357 8 6 3.5266 -3.6086 -0.3132 9 6 3.6420 -4.0895 -1.7677 10 6 3.2688 -5.5775 -1.8179 11 6 1.9853 -5.7443 -2.6235 12 6 0.9761 -4.6678 -2.2145 13 6 0.3436 -5.0484 -0.8729 14 1 0.0308 -6.0921 -0.9015 15 7 -0.8150 -4.1901 -0.6140 16 6 -1.7600 -4.5730 0.3001 17 1 -1.6032 -5.4563 0.9012 18 6 -2.9198 -3.8257 0.4537 19 7 -3.7636 -4.1121 1.4224 20 14 -3.2828 -2.4138 -0.7142 21 1 -4.0308 -2.9246 -1.8909 22 1 -4.0999 -1.3901 -0.0143 23 1 -2.0061 -1.8042 -1.1656 24 6 1.3874 -4.8533 0.2344 25 1 -0.3633 -0.1069 1.0221 26 1 -0.3634 0.9385 -0.4185 27 1 -0.3634 -0.8318 -0.6036 28 1 2.8872 1.3629 -0.8900 29 1 1.5521 2.1336 -0.0005 30 1 2.8870 1.3629 0.8899 31 1 3.2447 -1.1560 -0.1248 32 1 3.9414 -2.6048 -0.2212 33 1 4.0607 -4.2925 0.3463 34 1 2.9594 -3.5191 -2.3975 35 1 4.6650 -3.9530 -2.1185 36 1 4.0729 -6.1389 -2.2934 37 1 3.1138 -5.9485 -0.8047 38 1 2.2087 -5.6471 -3.6859 39 1 1.5615 -6.7298 -2.4306 40 1 1.4862 -3.7096 -2.1164 41 1 0.1991 -4.5899 -2.9750 42 1 -0.9127 -3.3506 -1.0899 43 1 -4.5738 -3.5897 1.5300 44 1 2.1005 -5.6774 0.2083 45 1 0.8881 -4.8382 1.2032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088253506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:59 Heat of formation + Delta-G solvation = 28.415978 kcal Electronic energy + Delta-G solvation = -24402.545208 eV Core-core repulsion = 21229.254781 eV Total energy + Delta-G solvation = -3173.290427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14570 -37.65270 -35.13052 -34.72650 -33.56297 -31.80481 -29.80017 -28.48261 -27.52803 -26.66523 -26.23531 -23.52648 -22.54810 -21.01447 -20.08656 -18.87400 -17.44545 -17.25950 -16.69114 -15.74859 -15.13984 -15.12276 -14.35424 -14.12609 -13.84787 -13.72862 -13.48957 -13.41498 -13.20735 -12.57553 -12.43625 -12.21931 -11.98948 -11.91412 -11.79620 -11.66906 -11.43233 -11.22234 -11.05368 -10.73500 -10.67666 -10.53981 -10.35964 -10.01875 -9.73088 -9.69772 -9.33281 -8.86857 -8.75201 -8.50764 -7.96902 -6.76059 -5.48633 -2.76517 1.75273 3.57804 3.60777 3.63837 3.66623 3.93783 4.78731 4.85639 4.90031 4.95477 5.00910 5.14089 5.21910 5.36031 5.43025 5.47942 5.48851 5.54112 5.63228 5.73542 5.78203 5.79631 5.84710 5.89223 5.94974 6.05252 6.16256 6.19282 6.23237 6.26118 6.34610 6.40668 6.42676 6.59698 6.67349 6.77178 6.84513 6.90604 6.98838 7.30697 8.08280 8.27654 8.70682 9.04785 9.55335 10.29358 10.50186 11.70945 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.009370 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.566830 B = 2987.527102 C = 4503.704632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.044 4.044 3 C -0.123 4.123 4 C -0.236 4.236 5 C 0.518 3.482 6 O -0.466 6.466 7 N -0.607 5.607 8 C 0.107 3.893 9 C -0.146 4.146 10 C -0.128 4.128 11 C -0.113 4.113 12 C -0.137 4.137 13 C 0.171 3.829 14 H 0.054 0.946 15 N -0.725 5.725 16 C -0.212 4.212 17 H 0.080 0.920 18 C 0.004 3.996 19 N -0.945 5.945 20 Si 0.885 3.115 21 H -0.297 1.297 22 H -0.300 1.300 23 H -0.268 1.268 24 C 0.094 3.906 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.364 0.636 43 H 0.253 0.747 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.328 4.403 -6.807 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.046 4.046 3 C -0.180 4.180 4 C -0.256 4.256 5 C 0.307 3.693 6 O -0.338 6.338 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.185 4.185 10 C -0.165 4.165 11 C -0.151 4.151 12 C -0.175 4.175 13 C 0.060 3.940 14 H 0.072 0.928 15 N -0.367 5.367 16 C -0.343 4.343 17 H 0.098 0.902 18 C -0.190 4.190 19 N -0.595 5.595 20 Si 0.718 3.282 21 H -0.225 1.225 22 H -0.227 1.227 23 H -0.195 1.195 24 C -0.031 4.031 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.199 0.801 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.504 4.286 -6.488 20.072 hybrid contribution -0.044 1.041 -0.654 1.230 sum 18.460 5.326 -7.142 20.498 Atomic orbital electron populations 1.21295 0.90696 1.02318 1.04156 1.22500 0.96926 0.94176 0.90997 1.20964 1.00064 0.94712 1.02227 1.22591 0.99725 0.93062 1.10267 1.18527 0.87514 0.83695 0.79559 1.91070 1.13284 1.86063 1.43425 1.47834 1.09135 1.06337 1.70978 1.21955 0.82789 1.01717 0.95180 1.22481 1.01131 0.97257 0.97594 1.21892 0.97274 0.95915 1.01441 1.21448 0.95415 0.99479 0.98795 1.22163 0.97921 0.99435 0.98017 1.20670 0.87331 0.95005 0.91019 0.92783 1.42694 1.23033 1.21657 1.49350 1.18887 0.95185 1.08585 1.11604 0.90202 1.24517 0.97314 0.98506 0.98635 1.69738 1.13404 1.43058 1.33271 0.86546 0.77397 0.83322 0.80956 1.22495 1.22666 1.19482 1.22583 0.94822 0.83716 1.01977 0.90163 0.93464 0.88530 0.91203 0.91511 0.90987 0.86358 0.90234 0.91503 0.90250 0.91966 0.92746 0.90758 0.92819 0.91986 0.90735 0.92612 0.80074 0.93731 0.91408 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.41 36.00 0.30 -1.94 16 2 C -0.04 -0.63 6.11 -101.17 -0.62 -1.25 16 3 C -0.12 -1.25 10.06 36.01 0.36 -0.89 16 4 C -0.24 -3.43 8.96 -37.80 -0.34 -3.77 16 5 C 0.52 9.45 6.65 -12.66 -0.08 9.36 16 6 O -0.47 -10.73 9.39 5.27 0.05 -10.68 16 7 N -0.61 -9.52 1.72 -174.27 -0.30 -9.82 16 8 C 0.11 1.20 5.84 -3.37 -0.02 1.18 16 9 C -0.15 -1.51 5.60 -26.15 -0.15 -1.66 16 10 C -0.13 -1.37 5.48 -26.76 -0.15 -1.52 16 11 C -0.11 -1.42 5.67 -26.95 -0.15 -1.57 16 12 C -0.14 -2.22 4.88 -26.60 -0.13 -2.35 16 13 C 0.17 3.34 2.66 -67.65 -0.18 3.16 16 14 H 0.05 1.09 7.86 -51.93 -0.41 0.68 16 15 N -0.72 -17.88 2.74 -53.15 -0.15 -18.02 16 16 C -0.21 -6.25 9.85 -15.06 -0.15 -6.40 16 17 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 19 N -0.94 -31.43 13.97 55.49 0.78 -30.66 16 20 Si 0.89 24.12 27.92 -169.99 -4.75 19.37 16 21 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 22 H -0.30 -8.33 7.11 56.52 0.40 -7.93 16 23 H -0.27 -6.88 4.76 56.52 0.27 -6.61 16 24 C 0.09 1.65 4.93 -4.06 -0.02 1.63 16 25 H 0.08 1.53 8.00 -51.93 -0.42 1.12 16 26 H 0.05 0.70 7.93 -51.93 -0.41 0.29 16 27 H 0.10 2.02 4.69 -51.92 -0.24 1.78 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.12 1.35 5.87 -52.49 -0.31 1.04 16 32 H 0.08 0.77 5.35 -51.93 -0.28 0.49 16 33 H 0.07 0.67 7.97 -51.93 -0.41 0.26 16 34 H 0.08 0.95 5.45 -51.93 -0.28 0.67 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.84 4.49 -51.93 -0.23 0.61 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.78 7.84 -51.93 -0.41 0.38 16 40 H 0.07 1.21 3.68 -51.93 -0.19 1.02 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.36 9.25 4.43 -40.82 -0.18 9.07 16 43 H 0.25 8.10 8.31 -40.82 -0.34 7.76 16 44 H 0.07 0.99 5.07 -51.93 -0.26 0.72 16 45 H 0.07 1.52 7.88 -51.93 -0.41 1.11 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -34.53 324.93 -7.97 -42.50 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.08 Total: 8.38 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.42 Total: -5.97 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.33 Total: -58.50 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.05 Total: -10.68 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.75 Total: 19.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.53 -7.97 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088253506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.917 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds