Wall clock time and date at job start Tue Mar 31 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50705 * 120.00009 * 2 1 4 4 C 1.33000 * 120.00258 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99899 * 352.30124 * 4 2 1 6 6 O 1.21611 * 119.99712 * 353.19217 * 5 4 2 7 7 N 1.34777 * 119.99767 * 173.19248 * 5 4 2 8 8 C 1.47134 * 120.17506 * 358.65104 * 7 5 4 9 9 C 1.53631 * 107.51571 * 252.13774 * 8 7 5 10 10 C 1.53488 * 108.42970 * 290.23300 * 9 8 7 11 11 C 1.52458 * 109.15167 * 114.21439 * 10 9 8 12 12 C 1.53115 * 109.68170 * 316.06265 * 11 10 9 13 13 C 1.53131 * 109.35982 * 282.99265 * 12 11 10 14 14 H 1.08994 * 109.48615 * 312.56576 * 13 12 11 15 15 N 1.46498 * 109.62564 * 192.06127 * 13 12 11 16 16 C 1.36937 * 119.99695 * 161.02982 * 15 13 12 17 17 H 1.07992 * 120.00267 * 6.13440 * 16 15 13 18 18 C 1.38819 * 119.99768 * 186.14317 * 16 15 13 19 19 N 1.31618 * 119.99916 * 186.92458 * 18 16 15 20 20 Si 1.86797 * 119.99967 * 6.92247 * 18 16 15 21 21 H 1.48495 * 109.47124 * 88.68681 * 20 18 16 22 22 H 1.48504 * 109.46901 * 208.69086 * 20 18 16 23 23 H 1.48503 * 109.47044 * 328.68459 * 20 18 16 24 24 C 1.46068 * 120.16946 * 178.62545 * 7 5 4 25 25 H 1.08999 * 109.46963 * 264.02943 * 1 2 3 26 26 H 1.08993 * 109.47503 * 24.03385 * 1 2 3 27 27 H 1.09008 * 109.47083 * 144.03150 * 1 2 3 28 28 H 1.09007 * 109.47031 * 239.99874 * 3 2 1 29 29 H 1.09000 * 109.46661 * 359.97438 * 3 2 1 30 30 H 1.08991 * 109.47079 * 119.99654 * 3 2 1 31 31 H 1.08002 * 119.99931 * 172.30309 * 4 2 1 32 32 H 1.08999 * 109.84920 * 11.63906 * 8 7 5 33 33 H 1.08994 * 109.84920 * 132.62966 * 8 7 5 34 34 H 1.08995 * 109.64311 * 49.91659 * 9 8 7 35 35 H 1.09004 * 109.63727 * 170.34227 * 9 8 7 36 36 H 1.08995 * 109.52474 * 234.11908 * 10 9 8 37 37 H 1.09003 * 109.52318 * 354.31055 * 10 9 8 38 38 H 1.09000 * 109.43679 * 76.12983 * 11 10 9 39 39 H 1.08998 * 109.43508 * 196.04488 * 11 10 9 40 40 H 1.09001 * 109.49140 * 42.90720 * 12 11 10 41 41 H 1.09001 * 109.49797 * 162.95408 * 12 11 10 42 42 H 0.96993 * 120.00152 * 341.02754 * 15 13 12 43 43 H 0.96999 * 120.00038 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.36052 * 187.16264 * 24 7 5 45 45 H 1.08998 * 109.36191 * 306.89334 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4465 -2.4199 0.1717 6 8 0.2595 -2.4104 0.4361 7 7 2.0973 -3.5923 0.0357 8 6 3.5266 -3.6086 -0.3132 9 6 3.6420 -4.0895 -1.7677 10 6 3.2688 -5.5775 -1.8179 11 6 1.9853 -5.7443 -2.6235 12 6 0.9761 -4.6678 -2.2145 13 6 0.3436 -5.0484 -0.8729 14 1 0.0308 -6.0921 -0.9015 15 7 -0.8150 -4.1901 -0.6140 16 6 -1.7600 -4.5730 0.3001 17 1 -1.6032 -5.4563 0.9012 18 6 -2.9198 -3.8257 0.4537 19 7 -3.7636 -4.1121 1.4224 20 14 -3.2828 -2.4138 -0.7142 21 1 -4.0308 -2.9246 -1.8909 22 1 -4.0999 -1.3901 -0.0143 23 1 -2.0061 -1.8042 -1.1656 24 6 1.3874 -4.8533 0.2344 25 1 -0.3633 -0.1069 1.0221 26 1 -0.3634 0.9385 -0.4185 27 1 -0.3634 -0.8318 -0.6036 28 1 2.8872 1.3629 -0.8900 29 1 1.5521 2.1336 -0.0005 30 1 2.8870 1.3629 0.8899 31 1 3.2447 -1.1560 -0.1248 32 1 3.9414 -2.6048 -0.2212 33 1 4.0607 -4.2925 0.3463 34 1 2.9594 -3.5191 -2.3975 35 1 4.6650 -3.9530 -2.1185 36 1 4.0729 -6.1389 -2.2934 37 1 3.1138 -5.9485 -0.8047 38 1 2.2087 -5.6471 -3.6859 39 1 1.5615 -6.7298 -2.4306 40 1 1.4862 -3.7096 -2.1164 41 1 0.1991 -4.5899 -2.9750 42 1 -0.9127 -3.3506 -1.0899 43 1 -4.5738 -3.5897 1.5300 44 1 2.1005 -5.6774 0.2083 45 1 0.8881 -4.8382 1.2032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088253506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:58 Heat of formation + Delta-G solvation = 6.349308 kcal Electronic energy + Delta-G solvation = -24403.502090 eV Core-core repulsion = 21229.254781 eV Total energy + Delta-G solvation = -3174.247310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44563 -38.92464 -36.57718 -36.12692 -34.89165 -33.75065 -31.55099 -29.70584 -28.63104 -27.97958 -27.47476 -25.19751 -23.94582 -22.45773 -21.22244 -20.28716 -19.37969 -18.64823 -17.89473 -17.03347 -16.71105 -16.43081 -16.07115 -15.61469 -15.13569 -14.93172 -14.76449 -14.62882 -14.54087 -14.25406 -13.70343 -13.55066 -13.29481 -13.23316 -13.06233 -13.02918 -12.85973 -12.66744 -12.53373 -12.24877 -12.05884 -11.79895 -11.73981 -11.71886 -11.41648 -11.16481 -10.98957 -10.77977 -10.14532 -9.93226 -9.43080 -8.79123 -7.91515 -5.13203 0.59014 1.33677 1.38921 1.48559 2.37167 2.59016 2.62236 3.39314 3.68216 3.83918 3.90836 4.01986 4.05166 4.16145 4.24774 4.28233 4.41102 4.48957 4.56969 4.61705 4.67933 4.70040 4.74256 4.83392 4.88935 4.91481 4.93881 4.99935 5.09274 5.13205 5.18428 5.25513 5.27564 5.43903 5.45899 5.56332 5.57070 5.67738 5.74834 5.84818 5.97952 6.33645 6.82588 7.25732 7.71301 8.08973 8.24983 9.31840 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.009370 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.566830 B = 2987.527102 C = 4503.704632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 C -0.116 4.116 4 C -0.237 4.237 5 C 0.504 3.496 6 O -0.530 6.530 7 N -0.603 5.603 8 C 0.101 3.899 9 C -0.140 4.140 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.127 4.127 13 C 0.159 3.841 14 H 0.042 0.958 15 N -0.725 5.725 16 C -0.184 4.184 17 H 0.046 0.954 18 C -0.068 4.068 19 N -0.996 5.996 20 Si 0.950 3.050 21 H -0.293 1.293 22 H -0.308 1.308 23 H -0.249 1.249 24 C 0.107 3.893 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.363 0.637 43 H 0.248 0.752 44 H 0.106 0.894 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.903 5.715 -9.019 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.044 4.044 3 C -0.172 4.172 4 C -0.257 4.257 5 C 0.295 3.705 6 O -0.407 6.407 7 N -0.337 5.337 8 C -0.020 4.020 9 C -0.178 4.178 10 C -0.163 4.163 11 C -0.146 4.146 12 C -0.165 4.165 13 C 0.050 3.950 14 H 0.060 0.940 15 N -0.367 5.367 16 C -0.315 4.315 17 H 0.064 0.936 18 C -0.257 4.257 19 N -0.650 5.650 20 Si 0.781 3.219 21 H -0.221 1.221 22 H -0.236 1.236 23 H -0.174 1.174 24 C -0.019 4.019 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.178 0.822 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.197 0.803 43 H 0.057 0.943 44 H 0.124 0.876 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 23.198 5.573 -8.751 25.413 hybrid contribution -1.358 0.526 0.069 1.458 sum 21.840 6.099 -8.681 24.281 Atomic orbital electron populations 1.21160 0.93687 1.01761 1.01822 1.22741 0.95180 0.96456 0.90057 1.21001 1.00148 0.91947 1.04121 1.22689 1.01364 0.90963 1.10724 1.19325 0.87198 0.85485 0.78511 1.91046 1.16119 1.87113 1.46417 1.47929 1.11083 1.04783 1.69891 1.22339 0.79586 1.03828 0.96287 1.22424 1.02748 0.96285 0.96350 1.21883 0.96833 0.96823 1.00716 1.21420 0.95271 0.97636 1.00293 1.22080 0.98265 1.01162 0.94968 1.20989 0.86430 0.93490 0.94051 0.93980 1.42694 1.23704 1.22186 1.48133 1.18859 0.95604 1.06472 1.10614 0.93596 1.25218 0.97816 1.01912 1.00790 1.69911 1.14215 1.45029 1.35807 0.85481 0.77623 0.80070 0.78677 1.22081 1.23618 1.17443 1.22201 0.95178 0.86322 0.98156 0.93048 0.91350 0.92253 0.88681 0.91008 0.89309 0.82187 0.87961 0.89637 0.91757 0.88540 0.90082 0.91570 0.90945 0.92321 0.90275 0.94256 0.80295 0.94324 0.87629 0.96303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.41 71.23 0.60 -3.87 16 2 C -0.04 -1.12 6.11 -17.62 -0.11 -1.23 16 3 C -0.12 -1.86 10.06 71.24 0.72 -1.15 16 4 C -0.24 -6.25 8.96 23.43 0.21 -6.04 16 5 C 0.50 18.10 6.65 86.57 0.58 18.67 16 6 O -0.53 -25.30 9.39 -4.06 -0.04 -25.34 16 7 N -0.60 -17.96 1.72 -823.52 -1.42 -19.37 16 8 C 0.10 1.80 5.84 86.47 0.51 2.31 16 9 C -0.14 -2.17 5.60 30.97 0.17 -2.00 16 10 C -0.13 -2.13 5.48 30.58 0.17 -1.96 16 11 C -0.11 -2.39 5.67 30.45 0.17 -2.22 16 12 C -0.13 -3.95 4.88 30.68 0.15 -3.80 16 13 C 0.16 6.35 2.66 45.18 0.12 6.47 16 14 H 0.04 1.76 7.86 -2.39 -0.02 1.74 16 15 N -0.72 -37.19 2.74 -322.08 -0.88 -38.08 16 16 C -0.18 -11.45 9.85 84.04 0.83 -10.63 16 17 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 18 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 19 N -1.00 -70.03 13.97 21.65 0.30 -69.73 16 20 Si 0.95 52.58 27.92 68.60 1.92 54.49 16 21 H -0.29 -15.84 7.11 99.48 0.71 -15.13 16 22 H -0.31 -17.36 7.11 99.48 0.71 -16.65 16 23 H -0.25 -12.86 4.76 99.48 0.47 -12.39 16 24 C 0.11 3.78 4.93 86.60 0.43 4.20 16 25 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 26 H 0.07 1.99 7.93 -2.39 -0.02 1.97 16 27 H 0.06 2.54 4.69 -2.38 -0.01 2.53 16 28 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.07 1.10 7.87 -2.39 -0.02 1.08 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.16 2.78 5.87 -2.91 -0.02 2.76 16 32 H 0.10 1.40 5.35 -2.39 -0.01 1.38 16 33 H 0.09 1.28 7.97 -2.39 -0.02 1.26 16 34 H 0.06 1.25 5.45 -2.39 -0.01 1.24 16 35 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.23 4.49 -2.39 -0.01 1.22 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.35 7.84 -2.39 -0.02 1.33 16 40 H 0.08 2.42 3.68 -2.39 -0.01 2.41 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.36 18.95 4.43 -92.71 -0.41 18.54 16 43 H 0.25 16.81 8.31 -92.71 -0.77 16.04 16 44 H 0.11 2.91 5.07 -2.38 -0.01 2.90 16 45 H 0.02 0.85 7.88 -2.39 -0.02 0.83 16 Total: -1.00 -83.38 324.93 5.23 -78.15 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.35 Total: 25.08 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.00 Total: -5.20 kcal Atomic # 7 Polarization: -125.18 SS G_CDS: -2.00 Total: -127.18 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.04 Total: -25.34 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 1.92 Total: 54.49 kcal Total: -83.38 5.23 -78.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088253506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.502 kcal (2) G-P(sol) polarization free energy of solvation -83.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds