Wall clock time and date at job start Tue Mar 31 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 C 1.53003 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55944 * 29.30918 * 4 3 2 6 6 C 1.52995 * 117.50258 * 243.62240 * 4 3 2 7 7 C 1.52994 * 117.50168 * 174.99785 * 4 3 2 8 8 H 1.08999 * 117.51777 * 0.02562 * 7 4 3 9 9 C 1.50699 * 117.49867 * 214.98095 * 7 4 3 10 10 O 1.21279 * 120.00175 * 359.97438 * 9 7 4 11 11 N 1.34786 * 120.00137 * 179.97438 * 9 7 4 12 12 C 1.46493 * 119.99912 * 179.97438 * 11 9 7 13 13 H 1.08994 * 110.64367 * 323.31027 * 12 11 9 14 14 C 1.55154 * 110.72245 * 86.45658 * 12 11 9 15 15 C 1.54907 * 101.58741 * 154.03871 * 14 12 11 16 16 N 1.47431 * 104.82898 * 322.98995 * 15 14 12 17 17 C 1.36938 * 125.64681 * 203.85945 * 16 15 14 18 18 H 1.07998 * 119.99582 * 161.49344 * 17 16 15 19 19 C 1.38812 * 119.99997 * 341.48956 * 17 16 15 20 20 N 1.31620 * 119.99793 * 157.52608 * 19 17 16 21 21 Si 1.86799 * 120.00197 * 337.53107 * 19 17 16 22 22 H 1.48500 * 109.47046 * 84.53559 * 21 19 17 23 23 H 1.48499 * 109.47121 * 204.53520 * 21 19 17 24 24 H 1.48503 * 109.46914 * 324.53527 * 21 19 17 25 25 C 1.47026 * 108.70188 * 24.12738 * 16 15 14 26 26 H 1.09002 * 109.87995 * 239.51900 * 25 16 15 27 27 C 1.53000 * 109.87890 * 118.35696 * 25 16 15 28 28 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47197 * 299.99943 * 1 2 3 30 30 H 1.08996 * 109.47251 * 60.00491 * 1 2 3 31 31 H 1.08999 * 109.47377 * 239.99549 * 2 1 3 32 32 H 1.09006 * 109.47207 * 119.99603 * 2 1 3 33 33 H 1.08993 * 109.47291 * 60.00294 * 3 2 1 34 34 H 1.08995 * 109.47265 * 299.99218 * 3 2 1 35 35 H 1.09002 * 117.50341 * 145.01660 * 6 4 3 36 36 H 1.09005 * 117.51727 * 359.97438 * 6 4 3 37 37 H 0.97004 * 119.99593 * 359.97438 * 11 9 7 38 38 H 1.09004 * 111.00487 * 35.96377 * 14 12 11 39 39 H 1.09000 * 111.00311 * 272.11331 * 14 12 11 40 40 H 1.08999 * 110.37429 * 204.15244 * 15 14 12 41 41 H 1.09005 * 110.45801 * 81.87089 * 15 14 12 42 42 H 0.96999 * 120.00297 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47115 * 61.45323 * 27 25 16 44 44 H 1.09001 * 109.46920 * 181.45110 * 27 25 16 45 45 H 1.08998 * 109.47426 * 301.45208 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5851 -0.4804 6 6 4.2759 2.0457 1.2166 7 6 4.2764 2.7945 -0.1176 8 1 3.6515 3.6842 -0.1954 9 6 5.5695 2.8386 -0.8902 10 8 6.0125 1.8261 -1.3895 11 7 6.2339 4.0035 -1.0263 12 6 7.4912 4.0462 -1.7769 13 1 8.0703 3.1383 -1.6085 14 6 7.2201 4.2516 -3.2907 15 6 8.5359 4.9254 -3.7538 16 7 8.9206 5.8087 -2.6379 17 6 9.7160 6.9190 -2.7366 18 1 9.7049 7.6625 -1.9533 19 6 10.5365 7.0888 -3.8432 20 7 10.9517 8.2926 -4.1761 21 14 11.0514 5.6088 -4.8601 22 1 9.9943 5.3011 -5.8567 23 1 12.3232 5.9107 -5.5648 24 1 11.2458 4.4382 -3.9673 25 6 8.3139 5.2964 -1.4004 26 1 7.6606 6.0535 -0.9668 27 6 9.4097 4.9170 -0.4022 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 5.2109 1.5851 1.5356 36 1 3.6506 2.4430 2.0162 37 1 5.8794 4.8135 -0.6273 38 1 6.3668 4.9111 -3.4489 39 1 7.0722 3.2963 -3.7943 40 1 8.3654 5.5092 -4.6583 41 1 9.3076 4.1752 -3.9272 42 1 11.5248 8.4114 -4.9496 43 1 9.9946 5.8018 -0.1511 44 1 8.9536 4.5142 0.5022 45 1 10.0613 4.1647 -0.8465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088843130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:36 Heat of formation + Delta-G solvation = -5.336691 kcal Electronic energy + Delta-G solvation = -22113.039722 eV Core-core repulsion = 18938.285669 eV Total energy + Delta-G solvation = -3174.754053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.12888 -38.36298 -37.02407 -34.13148 -34.08926 -32.09731 -30.70938 -29.43928 -27.78792 -25.49189 -24.00621 -23.46819 -22.22521 -21.13870 -20.68035 -20.24170 -19.33751 -17.22216 -16.90649 -16.11597 -15.50519 -15.17015 -15.03707 -14.67226 -14.46810 -13.92712 -13.58798 -13.40453 -13.06030 -12.97778 -12.79627 -12.47367 -12.30182 -12.13143 -11.87109 -11.61184 -11.57157 -11.32128 -11.20117 -11.12301 -10.87682 -10.78388 -10.46326 -10.43619 -10.23245 -10.12789 -9.98936 -9.68594 -9.43710 -8.82563 -8.65896 -7.09021 -5.95636 -3.26531 2.53506 3.17248 3.36181 3.49764 3.52220 3.66768 4.34380 4.54060 4.54950 4.60367 4.78435 4.85342 4.88217 5.00682 5.04850 5.17435 5.23547 5.25189 5.33113 5.42462 5.47465 5.51090 5.56643 5.61363 5.73776 5.75916 5.86109 5.92685 5.95162 5.96509 6.04278 6.14167 6.17870 6.31419 6.40922 6.47728 6.62957 6.73844 6.80639 6.97834 7.64487 7.69209 8.29563 8.34411 8.81422 9.67598 10.15291 11.20233 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038248 B = 0.003189 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.896448 B = 8777.384111 C = 9032.835776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.118 4.118 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.189 4.189 8 H 0.122 0.878 9 C 0.542 3.458 10 O -0.544 6.544 11 N -0.712 5.712 12 C 0.135 3.865 13 H 0.094 0.906 14 C -0.140 4.140 15 C 0.111 3.889 16 N -0.601 5.601 17 C -0.238 4.238 18 H 0.093 0.907 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.881 3.119 22 H -0.285 1.285 23 H -0.303 1.303 24 H -0.276 1.276 25 C 0.156 3.844 26 H 0.046 0.954 27 C -0.156 4.156 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.295 -12.939 10.476 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.137 4.137 5 H 0.135 0.865 6 C -0.186 4.186 7 C -0.211 4.211 8 H 0.140 0.860 9 C 0.328 3.672 10 O -0.422 6.422 11 N -0.362 5.362 12 C 0.030 3.970 13 H 0.112 0.888 14 C -0.179 4.179 15 C -0.014 4.014 16 N -0.327 5.327 17 C -0.365 4.365 18 H 0.110 0.890 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.711 3.289 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.202 1.202 25 C 0.048 3.952 26 H 0.064 0.936 27 C -0.215 4.215 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.798 -13.458 9.996 24.450 hybrid contribution 0.397 -0.240 -0.509 0.689 sum -17.401 -13.698 9.486 24.092 Atomic orbital electron populations 1.21782 0.95905 1.01613 1.01773 1.21503 0.95611 0.96536 1.02358 1.21245 0.91978 0.97341 1.02192 1.22441 0.94589 0.95564 1.01104 0.86458 1.23091 1.03094 1.02162 0.90301 1.22314 0.97908 0.98802 1.02035 0.85981 1.19620 0.84588 0.83272 0.79732 1.90683 1.68501 1.34111 1.48867 1.45961 1.24352 1.10673 1.55195 1.22112 0.84099 0.99722 0.91085 0.88826 1.23122 0.98982 1.00493 0.95304 1.21959 0.93046 0.93233 0.93161 1.44840 1.57908 1.29263 1.00701 1.18574 1.16454 0.94146 1.07342 0.88978 1.24990 0.98502 0.96324 0.97764 1.69833 1.37759 1.20070 1.27485 0.87011 0.77497 0.84202 0.80167 1.21180 1.23063 1.20178 1.21078 0.93415 0.91850 0.88815 0.93593 1.22206 0.99657 1.01786 0.97840 0.92777 0.92811 0.92720 0.91771 0.91834 0.91660 0.91375 0.88318 0.87900 0.76498 0.90971 0.91261 0.91959 0.95524 0.92695 0.91934 0.94067 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.85 5.89 -26.73 -0.16 -1.00 16 3 C -0.09 -0.66 5.50 -26.73 -0.15 -0.81 16 4 C -0.12 -1.11 5.25 -90.62 -0.48 -1.59 16 5 H 0.12 1.33 7.60 -51.93 -0.39 0.93 16 6 C -0.15 -1.28 9.88 -26.74 -0.26 -1.54 16 7 C -0.19 -1.90 5.91 -91.78 -0.54 -2.45 16 8 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 9 C 0.54 7.58 7.61 -10.98 -0.08 7.50 16 10 O -0.54 -9.70 15.98 5.56 0.09 -9.61 16 11 N -0.71 -9.72 5.21 -52.04 -0.27 -9.99 16 12 C 0.13 2.29 2.75 -66.10 -0.18 2.11 16 13 H 0.09 1.72 7.40 -51.93 -0.38 1.34 16 14 C -0.14 -2.52 6.77 -24.59 -0.17 -2.69 16 15 C 0.11 2.46 4.70 -2.53 -0.01 2.45 16 16 N -0.60 -14.23 2.94 -162.56 -0.48 -14.70 16 17 C -0.24 -6.61 10.16 -15.06 -0.15 -6.76 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.02 0.66 5.43 -17.43 -0.09 0.57 16 20 N -0.91 -27.83 13.97 55.49 0.78 -27.05 16 21 Si 0.88 22.75 24.27 -169.99 -4.13 18.63 16 22 H -0.28 -7.11 6.49 56.52 0.37 -6.74 16 23 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 24 H -0.28 -7.08 6.66 56.52 0.38 -6.70 16 25 C 0.16 2.96 3.48 -66.95 -0.23 2.73 16 26 H 0.05 0.84 7.70 -51.93 -0.40 0.44 16 27 C -0.16 -2.82 9.14 37.16 0.34 -2.48 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.67 8.03 -51.93 -0.42 0.26 16 37 H 0.40 4.46 8.33 -40.82 -0.34 4.12 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.46 6.67 -51.93 -0.35 1.11 16 41 H 0.03 0.62 5.55 -51.93 -0.29 0.34 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.06 1.20 8.02 -51.93 -0.42 0.79 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -32.13 356.25 -8.53 -40.66 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.09 Total: 1.21 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.80 Total: -4.51 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.03 Total: -51.75 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.13 Total: 18.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.13 -8.53 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088843130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.320 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds