Wall clock time and date at job start Tue Mar 31 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 C 1.53003 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55944 * 29.30918 * 4 3 2 6 6 C 1.52995 * 117.50258 * 243.62240 * 4 3 2 7 7 C 1.52994 * 117.50168 * 174.99785 * 4 3 2 8 8 H 1.08999 * 117.51777 * 0.02562 * 7 4 3 9 9 C 1.50699 * 117.49867 * 214.98095 * 7 4 3 10 10 O 1.21279 * 120.00175 * 359.97438 * 9 7 4 11 11 N 1.34786 * 120.00137 * 179.97438 * 9 7 4 12 12 C 1.46493 * 119.99912 * 179.97438 * 11 9 7 13 13 H 1.08994 * 110.64367 * 323.31027 * 12 11 9 14 14 C 1.55154 * 110.72245 * 86.45658 * 12 11 9 15 15 C 1.54907 * 101.58741 * 154.03871 * 14 12 11 16 16 N 1.47431 * 104.82898 * 322.98995 * 15 14 12 17 17 C 1.36938 * 125.64681 * 203.85945 * 16 15 14 18 18 H 1.07998 * 119.99582 * 161.49344 * 17 16 15 19 19 C 1.38812 * 119.99997 * 341.48956 * 17 16 15 20 20 N 1.31620 * 119.99793 * 157.52608 * 19 17 16 21 21 Si 1.86799 * 120.00197 * 337.53107 * 19 17 16 22 22 H 1.48500 * 109.47046 * 84.53559 * 21 19 17 23 23 H 1.48499 * 109.47121 * 204.53520 * 21 19 17 24 24 H 1.48503 * 109.46914 * 324.53527 * 21 19 17 25 25 C 1.47026 * 108.70188 * 24.12738 * 16 15 14 26 26 H 1.09002 * 109.87995 * 239.51900 * 25 16 15 27 27 C 1.53000 * 109.87890 * 118.35696 * 25 16 15 28 28 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47197 * 299.99943 * 1 2 3 30 30 H 1.08996 * 109.47251 * 60.00491 * 1 2 3 31 31 H 1.08999 * 109.47377 * 239.99549 * 2 1 3 32 32 H 1.09006 * 109.47207 * 119.99603 * 2 1 3 33 33 H 1.08993 * 109.47291 * 60.00294 * 3 2 1 34 34 H 1.08995 * 109.47265 * 299.99218 * 3 2 1 35 35 H 1.09002 * 117.50341 * 145.01660 * 6 4 3 36 36 H 1.09005 * 117.51727 * 359.97438 * 6 4 3 37 37 H 0.97004 * 119.99593 * 359.97438 * 11 9 7 38 38 H 1.09004 * 111.00487 * 35.96377 * 14 12 11 39 39 H 1.09000 * 111.00311 * 272.11331 * 14 12 11 40 40 H 1.08999 * 110.37429 * 204.15244 * 15 14 12 41 41 H 1.09005 * 110.45801 * 81.87089 * 15 14 12 42 42 H 0.96999 * 120.00297 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47115 * 61.45323 * 27 25 16 44 44 H 1.09001 * 109.46920 * 181.45110 * 27 25 16 45 45 H 1.08998 * 109.47426 * 301.45208 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5851 -0.4804 6 6 4.2759 2.0457 1.2166 7 6 4.2764 2.7945 -0.1176 8 1 3.6515 3.6842 -0.1954 9 6 5.5695 2.8386 -0.8902 10 8 6.0125 1.8261 -1.3895 11 7 6.2339 4.0035 -1.0263 12 6 7.4912 4.0462 -1.7769 13 1 8.0703 3.1383 -1.6085 14 6 7.2201 4.2516 -3.2907 15 6 8.5359 4.9254 -3.7538 16 7 8.9206 5.8087 -2.6379 17 6 9.7160 6.9190 -2.7366 18 1 9.7049 7.6625 -1.9533 19 6 10.5365 7.0888 -3.8432 20 7 10.9517 8.2926 -4.1761 21 14 11.0514 5.6088 -4.8601 22 1 9.9943 5.3011 -5.8567 23 1 12.3232 5.9107 -5.5648 24 1 11.2458 4.4382 -3.9673 25 6 8.3139 5.2964 -1.4004 26 1 7.6606 6.0535 -0.9668 27 6 9.4097 4.9170 -0.4022 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 5.2109 1.5851 1.5356 36 1 3.6506 2.4430 2.0162 37 1 5.8794 4.8135 -0.6273 38 1 6.3668 4.9111 -3.4489 39 1 7.0722 3.2963 -3.7943 40 1 8.3654 5.5092 -4.6583 41 1 9.3076 4.1752 -3.9272 42 1 11.5248 8.4114 -4.9496 43 1 9.9946 5.8018 -0.1511 44 1 8.9536 4.5142 0.5022 45 1 10.0613 4.1647 -0.8465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088843130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:35 Heat of formation + Delta-G solvation = -25.697530 kcal Electronic energy + Delta-G solvation = -22113.922634 eV Core-core repulsion = 18938.285669 eV Total energy + Delta-G solvation = -3175.636965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26707 -39.73415 -38.00963 -35.61643 -34.70889 -34.02813 -32.28521 -31.18556 -28.43224 -26.85034 -25.88514 -24.65211 -22.86810 -22.55776 -21.57077 -21.43153 -20.66097 -18.85414 -18.24725 -17.57091 -16.99633 -16.17804 -16.12227 -16.03124 -15.52326 -15.24154 -15.10230 -14.61356 -14.46226 -14.17264 -14.00396 -13.75472 -13.51296 -13.25438 -13.09258 -12.94659 -12.90386 -12.61285 -12.48458 -12.18293 -12.12642 -12.04277 -11.91137 -11.65958 -11.63992 -11.50162 -11.15413 -10.97733 -10.82912 -10.72465 -10.05441 -9.10018 -8.18319 -5.44577 1.28643 1.37466 1.44821 1.50344 2.06410 2.39956 2.89349 3.02539 3.26397 3.61816 3.66435 3.73176 3.79737 3.90854 4.09749 4.20005 4.24549 4.27181 4.32625 4.41142 4.42620 4.51983 4.67795 4.71076 4.77519 4.85648 4.88877 4.91386 4.96017 4.97799 5.02627 5.08649 5.10778 5.13273 5.24033 5.35158 5.39411 5.43614 5.53781 5.56500 5.68689 6.10639 6.57926 6.73648 7.26320 7.52631 8.08447 9.01188 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038248 B = 0.003189 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.896448 B = 8777.384111 C = 9032.835776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.122 4.122 5 H 0.092 0.908 6 C -0.134 4.134 7 C -0.192 4.192 8 H 0.150 0.850 9 C 0.540 3.460 10 O -0.586 6.586 11 N -0.701 5.701 12 C 0.150 3.850 13 H 0.082 0.918 14 C -0.127 4.127 15 C 0.105 3.895 16 N -0.617 5.617 17 C -0.220 4.220 18 H 0.069 0.931 19 C -0.033 4.033 20 N -0.953 5.953 21 Si 0.935 3.065 22 H -0.273 1.273 23 H -0.309 1.309 24 H -0.274 1.274 25 C 0.152 3.848 26 H 0.062 0.938 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.416 0.584 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.739 -14.070 11.985 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.121 4.121 4 C -0.141 4.141 5 H 0.110 0.890 6 C -0.171 4.171 7 C -0.213 4.213 8 H 0.168 0.832 9 C 0.328 3.672 10 O -0.467 6.467 11 N -0.352 5.352 12 C 0.044 3.956 13 H 0.100 0.900 14 C -0.166 4.166 15 C -0.020 4.020 16 N -0.343 5.343 17 C -0.348 4.348 18 H 0.086 0.914 19 C -0.228 4.228 20 N -0.600 5.600 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.237 1.237 24 H -0.200 1.200 25 C 0.046 3.954 26 H 0.079 0.921 27 C -0.208 4.208 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.253 0.747 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.288 -14.607 11.539 27.534 hybrid contribution 1.100 0.091 -0.887 1.416 sum -19.188 -14.516 10.652 26.313 Atomic orbital electron populations 1.21770 0.95069 1.01944 1.02141 1.21503 0.96320 0.96396 1.01901 1.21227 0.90285 0.97597 1.02993 1.22436 0.95806 0.94292 1.01572 0.89026 1.23199 1.02846 1.00808 0.90283 1.22338 0.96137 1.00266 1.02574 0.83240 1.20302 0.85419 0.82336 0.79144 1.90673 1.69795 1.35547 1.50644 1.45789 1.23103 1.11602 1.54713 1.21712 0.85198 0.97971 0.90759 0.89970 1.23026 0.97040 1.00643 0.95937 1.21992 0.94922 0.92702 0.92364 1.44921 1.57337 1.28805 1.03265 1.18516 1.15721 0.94728 1.05884 0.91367 1.25527 0.99570 0.98161 0.99546 1.69938 1.39572 1.21783 1.28713 0.86117 0.76983 0.81294 0.79102 1.19901 1.23744 1.20025 1.21264 0.93876 0.93050 0.87234 0.92077 1.22118 0.99060 1.00741 0.98887 0.92545 0.91994 0.92768 0.92941 0.91693 0.89878 0.91446 0.89435 0.84965 0.74666 0.89724 0.90377 0.93575 0.96331 0.92938 0.93605 0.90629 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.49 5.89 30.59 0.18 -1.31 16 3 C -0.08 -1.00 5.50 30.60 0.17 -0.83 16 4 C -0.12 -2.02 5.25 -10.80 -0.06 -2.08 16 5 H 0.09 2.02 7.60 -2.39 -0.02 2.00 16 6 C -0.13 -1.86 9.88 30.59 0.30 -1.56 16 7 C -0.19 -3.25 5.91 -11.54 -0.07 -3.32 16 8 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 9 C 0.54 13.85 7.61 87.66 0.67 14.52 16 10 O -0.59 -20.21 15.98 -3.03 -0.05 -20.26 16 11 N -0.70 -17.11 5.21 -436.93 -2.27 -19.38 16 12 C 0.15 4.78 2.75 46.18 0.13 4.91 16 13 H 0.08 2.89 7.40 -2.39 -0.02 2.87 16 14 C -0.13 -4.35 6.77 31.98 0.22 -4.13 16 15 C 0.11 4.56 4.70 86.85 0.41 4.97 16 16 N -0.62 -28.84 2.94 -668.23 -1.96 -30.80 16 17 C -0.22 -12.33 10.16 84.03 0.85 -11.48 16 18 H 0.07 4.09 8.06 -2.91 -0.02 4.06 16 19 C -0.03 -1.97 5.43 84.86 0.46 -1.50 16 20 N -0.95 -59.88 13.97 21.65 0.30 -59.57 16 21 Si 0.94 47.71 24.27 68.60 1.66 49.37 16 22 H -0.27 -13.22 6.49 99.48 0.65 -12.58 16 23 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 24 H -0.27 -13.75 6.66 99.48 0.66 -13.09 16 25 C 0.15 5.51 3.48 45.34 0.16 5.67 16 26 H 0.06 2.07 7.70 -2.39 -0.02 2.05 16 27 C -0.15 -5.17 9.14 71.98 0.66 -4.51 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 0.72 7.87 -2.39 -0.02 0.70 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.13 1.10 8.03 -2.38 -0.02 1.08 16 37 H 0.42 7.73 8.33 -92.71 -0.77 6.96 16 38 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.05 2.13 6.67 -2.39 -0.02 2.11 16 41 H 0.02 0.86 5.55 -2.38 -0.01 0.84 16 42 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.04 1.72 8.02 -2.39 -0.02 1.71 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -70.62 356.25 2.54 -68.08 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.08 Total: 14.02 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 4.79 Total: -1.44 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.94 Total: -109.76 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.66 Total: 49.37 kcal Total: -70.62 2.54 -68.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088843130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.378 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds