Wall clock time and date at job start Tue Mar 31 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46831 * 2 1 4 4 H 1.08990 * 109.46998 * 304.99968 * 3 2 1 5 5 C 1.52998 * 109.47041 * 65.00417 * 3 2 1 6 6 C 1.50701 * 109.46905 * 185.00159 * 3 2 1 7 7 O 1.21285 * 119.99982 * 359.97438 * 6 3 2 8 8 N 1.34774 * 119.99882 * 180.02562 * 6 3 2 9 9 C 1.47191 * 126.70381 * 359.97369 * 8 6 3 10 10 C 1.53740 * 106.43015 * 211.40489 * 9 8 6 11 11 H 1.08999 * 112.28522 * 104.36236 * 10 9 8 12 12 C 1.54454 * 109.01297 * 229.45803 * 10 9 8 13 13 N 1.48338 * 104.32346 * 137.35607 * 12 10 9 14 14 C 1.36938 * 128.19234 * 138.17120 * 13 12 10 15 15 H 1.08001 * 120.00431 * 338.75077 * 14 13 12 16 16 C 1.38810 * 119.99806 * 158.75916 * 14 13 12 17 17 N 1.31624 * 120.00078 * 336.53644 * 16 14 13 18 18 Si 1.86798 * 120.00473 * 156.26205 * 16 14 13 19 19 H 1.48505 * 109.46727 * 59.99912 * 18 16 14 20 20 H 1.48497 * 109.47650 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47221 * 300.00214 * 18 16 14 22 22 C 1.48328 * 103.60426 * 318.43532 * 13 12 10 23 23 C 1.54066 * 104.51900 * 41.53115 * 22 13 12 24 24 C 1.52997 * 112.57948 * 97.43599 * 23 22 13 25 25 C 1.47196 * 126.70277 * 180.02562 * 8 6 3 26 26 H 1.09003 * 109.47297 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47393 * 299.99911 * 1 2 3 28 28 H 1.08998 * 109.47441 * 60.00026 * 1 2 3 29 29 H 1.08996 * 109.47134 * 240.00382 * 2 1 3 30 30 H 1.08998 * 109.47441 * 119.99974 * 2 1 3 31 31 H 1.09006 * 109.46815 * 299.99707 * 5 3 2 32 32 H 1.08998 * 109.47138 * 59.99479 * 5 3 2 33 33 H 1.08998 * 109.47351 * 180.02562 * 5 3 2 34 34 H 1.09008 * 110.06227 * 92.16487 * 9 8 6 35 35 H 1.08995 * 110.06762 * 330.64929 * 9 8 6 36 36 H 1.08997 * 110.46249 * 18.65271 * 12 10 9 37 37 H 1.08996 * 110.46466 * 256.07140 * 12 10 9 38 38 H 0.97001 * 119.99695 * 353.98332 * 17 16 14 39 39 H 1.09008 * 110.46104 * 160.27837 * 22 13 12 40 40 H 1.08998 * 110.46007 * 282.85137 * 22 13 12 41 41 H 1.09004 * 109.47411 * 302.11404 * 24 23 22 42 42 H 1.09004 * 109.46951 * 62.10952 * 24 23 22 43 43 H 1.08997 * 109.47497 * 182.11154 * 24 23 22 44 44 H 1.08994 * 110.06878 * 267.83738 * 25 8 6 45 45 H 1.09006 * 110.06273 * 29.35592 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1239 7 8 4.1450 0.3952 -0.2038 8 7 4.2148 2.6119 -0.1448 9 6 3.6363 3.9625 -0.0576 10 6 4.5552 4.8830 -0.8774 11 1 4.1211 5.1482 -1.8414 12 6 4.9067 6.1262 -0.0310 13 7 6.3556 6.3356 -0.2706 14 6 7.0173 7.5162 -0.4793 15 1 6.4757 8.3859 -0.8208 16 6 8.3845 7.5950 -0.2522 17 7 8.9653 6.7459 0.5688 18 14 9.4014 8.9012 -1.1177 19 1 8.8976 10.2477 -0.7455 20 1 10.8229 8.7743 -0.7075 21 1 9.2917 8.7206 -2.5875 22 6 6.9167 4.9630 -0.2371 23 6 5.8942 4.1087 -1.0107 24 6 6.2976 3.8876 -2.4698 25 6 5.6720 2.7855 -0.2604 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5489 2.1252 1.3969 32 1 2.0698 1.5875 2.1491 33 1 1.9981 3.1544 1.3072 34 1 3.6084 4.2911 0.9814 35 1 2.6309 3.9667 -0.4787 36 1 4.7193 5.9335 1.0253 37 1 4.3357 6.9911 -0.3687 38 1 8.4276 6.1222 1.0816 39 1 7.8871 4.9358 -0.7330 40 1 7.0032 4.6117 0.7911 41 1 6.4159 4.8519 -2.9642 42 1 7.2405 3.3420 -2.5074 43 1 5.5240 3.3116 -2.9775 44 1 6.1222 2.8375 0.7308 45 1 6.1034 1.9587 -0.8248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091497458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:39 Heat of formation + Delta-G solvation = -22.468455 kcal Electronic energy + Delta-G solvation = -23304.823546 eV Core-core repulsion = 20129.326604 eV Total energy + Delta-G solvation = -3175.496942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53272 -38.74053 -35.52491 -35.22107 -32.74580 -31.51535 -29.95743 -29.43451 -26.70382 -25.89408 -25.33843 -24.88163 -22.60023 -21.14403 -20.61714 -19.05097 -18.48323 -17.38709 -16.90886 -15.75243 -15.61216 -15.13047 -14.66587 -14.23259 -13.85373 -13.75970 -13.63238 -13.54335 -13.16072 -12.83032 -12.58877 -12.47424 -12.24206 -11.94071 -11.88519 -11.78292 -11.56167 -11.20374 -11.08898 -10.92527 -10.83819 -10.73306 -10.49497 -10.22363 -10.18814 -10.10451 -9.97408 -9.63165 -9.39745 -8.57804 -8.48905 -7.03156 -6.15682 -3.23275 2.71147 3.09128 3.46709 3.50335 3.68344 4.39957 4.52379 4.59205 4.74790 4.77148 4.86041 5.08401 5.13535 5.19447 5.29076 5.33288 5.36783 5.41789 5.47734 5.53316 5.62090 5.62918 5.71869 5.78819 5.81879 5.86737 5.90588 5.99105 6.07388 6.13286 6.13458 6.17888 6.23660 6.37669 6.52666 6.53113 6.60610 6.78882 6.86794 6.99549 7.68416 7.69160 8.25299 8.39892 8.92598 9.73865 10.37599 11.19759 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.003967 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.785210 B = 7056.399935 C = 7296.228890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.106 4.106 4 H 0.094 0.906 5 C -0.152 4.152 6 C 0.531 3.469 7 O -0.548 6.548 8 N -0.612 5.612 9 C 0.107 3.893 10 C -0.109 4.109 11 H 0.086 0.914 12 C 0.131 3.869 13 N -0.596 5.596 14 C -0.329 4.329 15 H 0.064 0.936 16 C -0.025 4.025 17 N -0.918 5.918 18 Si 1.069 2.931 19 H -0.293 1.293 20 H -0.285 1.285 21 H -0.293 1.293 22 C 0.149 3.851 23 C -0.087 4.087 24 C -0.119 4.119 25 C 0.115 3.885 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.051 0.949 38 H 0.268 0.732 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.403 -8.664 -1.711 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.128 4.128 4 H 0.112 0.888 5 C -0.209 4.209 6 C 0.320 3.680 7 O -0.426 6.426 8 N -0.345 5.345 9 C -0.016 4.016 10 C -0.130 4.130 11 H 0.104 0.896 12 C 0.005 3.995 13 N -0.320 5.320 14 C -0.457 4.457 15 H 0.082 0.918 16 C -0.227 4.227 17 N -0.558 5.558 18 Si 0.898 3.102 19 H -0.220 1.220 20 H -0.210 1.210 21 H -0.220 1.220 22 C 0.022 3.978 23 C -0.090 4.090 24 C -0.176 4.176 25 C -0.007 4.007 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.491 -8.581 -1.987 16.112 hybrid contribution -1.636 -0.429 0.296 1.717 sum -15.127 -9.010 -1.691 17.688 Atomic orbital electron populations 1.21842 0.95551 1.01770 1.01857 1.21334 0.95211 0.94267 1.03424 1.21288 0.91781 0.99157 1.00535 0.88770 1.21961 1.02086 1.01098 0.95795 1.20349 0.89611 0.82113 0.75903 1.90679 1.70424 1.30736 1.50785 1.48636 1.08316 1.05706 1.71857 1.22349 0.97255 0.81613 1.00419 1.23097 0.94361 0.96251 0.99293 0.89565 1.21854 0.88247 0.94196 0.95238 1.45121 1.02011 1.01503 1.83414 1.19725 0.93693 0.88588 1.43668 0.91781 1.25853 0.95224 1.03185 0.98439 1.70776 1.39223 1.23072 1.22760 0.83469 0.76361 0.74639 0.75740 1.21975 1.21010 1.22012 1.21749 0.95580 0.84676 0.95775 1.22310 0.96876 0.93445 0.96348 1.21569 1.00197 1.01732 0.94138 1.22205 0.80325 0.97795 1.00423 0.92550 0.92420 0.92752 0.91226 0.91371 0.91312 0.92166 0.91430 0.90961 0.90960 0.95683 0.93095 0.92105 0.91400 0.95538 0.91706 0.92772 0.93643 0.91301 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.10 -1.07 4.75 -26.73 -0.13 -1.20 16 3 C -0.11 -1.15 2.04 -91.77 -0.19 -1.34 16 4 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 5 C -0.15 -1.40 8.72 37.16 0.32 -1.08 16 6 C 0.53 7.94 7.24 -10.99 -0.08 7.86 16 7 O -0.55 -10.12 16.15 5.55 0.09 -10.03 16 8 N -0.61 -9.12 3.31 -171.67 -0.57 -9.69 16 9 C 0.11 1.41 4.75 -3.28 -0.02 1.39 16 10 C -0.11 -1.75 3.73 -88.28 -0.33 -2.08 16 11 H 0.09 1.32 7.95 -51.93 -0.41 0.91 16 12 C 0.13 2.53 6.76 -2.27 -0.02 2.52 16 13 N -0.60 -14.46 3.22 -168.71 -0.54 -15.00 16 14 C -0.33 -9.00 10.22 -15.06 -0.15 -9.16 16 15 H 0.06 1.74 7.93 -52.49 -0.42 1.33 16 16 C -0.03 -0.71 5.14 -17.43 -0.09 -0.80 16 17 N -0.92 -27.30 12.77 55.49 0.71 -26.59 16 18 Si 1.07 24.89 29.98 -169.99 -5.10 19.79 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.29 4.32 -2.48 -0.01 3.28 16 23 C -0.09 -1.53 1.07 -152.39 -0.16 -1.70 16 24 C -0.12 -1.98 8.60 37.16 0.32 -1.67 16 25 C 0.12 1.91 6.21 -3.28 -0.02 1.89 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.62 5.16 -51.93 -0.27 0.36 16 34 H 0.07 0.94 6.51 -51.92 -0.34 0.60 16 35 H 0.07 0.77 6.90 -51.93 -0.36 0.41 16 36 H 0.03 0.48 7.17 -51.93 -0.37 0.11 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.27 7.99 6.44 -40.82 -0.26 7.72 16 39 H 0.07 1.69 7.15 -51.92 -0.37 1.32 16 40 H 0.03 0.61 6.80 -51.93 -0.35 0.26 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.19 7.10 -51.93 -0.37 0.82 16 45 H 0.08 1.29 7.61 -51.93 -0.40 0.89 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -31.58 340.78 -8.06 -39.64 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.60 Total: -0.38 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.19 Total: -2.87 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.40 Total: -51.29 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.10 Total: 19.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.58 -8.06 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091497458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.171 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds