Wall clock time and date at job start Tue Mar 31 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46831 * 2 1 4 4 H 1.08990 * 109.46998 * 304.99968 * 3 2 1 5 5 C 1.52998 * 109.47041 * 65.00417 * 3 2 1 6 6 C 1.50701 * 109.46905 * 185.00159 * 3 2 1 7 7 O 1.21285 * 119.99982 * 359.97438 * 6 3 2 8 8 N 1.34774 * 119.99882 * 180.02562 * 6 3 2 9 9 C 1.47191 * 126.70381 * 359.97369 * 8 6 3 10 10 C 1.53740 * 106.43015 * 211.40489 * 9 8 6 11 11 H 1.08999 * 112.28522 * 104.36236 * 10 9 8 12 12 C 1.54454 * 109.01297 * 229.45803 * 10 9 8 13 13 N 1.48338 * 104.32346 * 137.35607 * 12 10 9 14 14 C 1.36938 * 128.19234 * 138.17120 * 13 12 10 15 15 H 1.08001 * 120.00431 * 338.75077 * 14 13 12 16 16 C 1.38810 * 119.99806 * 158.75916 * 14 13 12 17 17 N 1.31624 * 120.00078 * 336.53644 * 16 14 13 18 18 Si 1.86798 * 120.00473 * 156.26205 * 16 14 13 19 19 H 1.48505 * 109.46727 * 59.99912 * 18 16 14 20 20 H 1.48497 * 109.47650 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47221 * 300.00214 * 18 16 14 22 22 C 1.48328 * 103.60426 * 318.43532 * 13 12 10 23 23 C 1.54066 * 104.51900 * 41.53115 * 22 13 12 24 24 C 1.52997 * 112.57948 * 97.43599 * 23 22 13 25 25 C 1.47196 * 126.70277 * 180.02562 * 8 6 3 26 26 H 1.09003 * 109.47297 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47393 * 299.99911 * 1 2 3 28 28 H 1.08998 * 109.47441 * 60.00026 * 1 2 3 29 29 H 1.08996 * 109.47134 * 240.00382 * 2 1 3 30 30 H 1.08998 * 109.47441 * 119.99974 * 2 1 3 31 31 H 1.09006 * 109.46815 * 299.99707 * 5 3 2 32 32 H 1.08998 * 109.47138 * 59.99479 * 5 3 2 33 33 H 1.08998 * 109.47351 * 180.02562 * 5 3 2 34 34 H 1.09008 * 110.06227 * 92.16487 * 9 8 6 35 35 H 1.08995 * 110.06762 * 330.64929 * 9 8 6 36 36 H 1.08997 * 110.46249 * 18.65271 * 12 10 9 37 37 H 1.08996 * 110.46466 * 256.07140 * 12 10 9 38 38 H 0.97001 * 119.99695 * 353.98332 * 17 16 14 39 39 H 1.09008 * 110.46104 * 160.27837 * 22 13 12 40 40 H 1.08998 * 110.46007 * 282.85137 * 22 13 12 41 41 H 1.09004 * 109.47411 * 302.11404 * 24 23 22 42 42 H 1.09004 * 109.46951 * 62.10952 * 24 23 22 43 43 H 1.08997 * 109.47497 * 182.11154 * 24 23 22 44 44 H 1.08994 * 110.06878 * 267.83738 * 25 8 6 45 45 H 1.09006 * 110.06273 * 29.35592 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1239 7 8 4.1450 0.3952 -0.2038 8 7 4.2148 2.6119 -0.1448 9 6 3.6363 3.9625 -0.0576 10 6 4.5552 4.8830 -0.8774 11 1 4.1211 5.1482 -1.8414 12 6 4.9067 6.1262 -0.0310 13 7 6.3556 6.3356 -0.2706 14 6 7.0173 7.5162 -0.4793 15 1 6.4757 8.3859 -0.8208 16 6 8.3845 7.5950 -0.2522 17 7 8.9653 6.7459 0.5688 18 14 9.4014 8.9012 -1.1177 19 1 8.8976 10.2477 -0.7455 20 1 10.8229 8.7743 -0.7075 21 1 9.2917 8.7206 -2.5875 22 6 6.9167 4.9630 -0.2371 23 6 5.8942 4.1087 -1.0107 24 6 6.2976 3.8876 -2.4698 25 6 5.6720 2.7855 -0.2604 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5489 2.1252 1.3969 32 1 2.0698 1.5875 2.1491 33 1 1.9981 3.1544 1.3072 34 1 3.6084 4.2911 0.9814 35 1 2.6309 3.9667 -0.4787 36 1 4.7193 5.9335 1.0253 37 1 4.3357 6.9911 -0.3687 38 1 8.4276 6.1222 1.0816 39 1 7.8871 4.9358 -0.7330 40 1 7.0032 4.6117 0.7911 41 1 6.4159 4.8519 -2.9642 42 1 7.2405 3.3420 -2.5074 43 1 5.5240 3.3116 -2.9775 44 1 6.1222 2.8375 0.7308 45 1 6.1034 1.9587 -0.8248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091497458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:38 Heat of formation + Delta-G solvation = -41.362813 kcal Electronic energy + Delta-G solvation = -23305.642867 eV Core-core repulsion = 20129.326604 eV Total energy + Delta-G solvation = -3176.316263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.82399 -40.07324 -36.83106 -36.42745 -34.44062 -33.06382 -31.15534 -30.64435 -28.15838 -27.43484 -26.73904 -25.96547 -24.06803 -22.28330 -22.10396 -20.33244 -19.79984 -19.28609 -18.09407 -16.93476 -16.79483 -16.34417 -16.06795 -15.87992 -15.42944 -15.33015 -14.94161 -14.59317 -14.43842 -14.15690 -13.81794 -13.56992 -13.37203 -13.19309 -12.99989 -12.80041 -12.65597 -12.56267 -12.49807 -12.43196 -12.24035 -11.92052 -11.74210 -11.69062 -11.62148 -11.57766 -11.52079 -11.42029 -10.75335 -10.57316 -9.78407 -9.03873 -8.33424 -5.36848 1.55947 1.58080 1.66052 1.84246 1.92319 2.64057 3.19354 3.26661 3.35527 3.59921 3.76817 3.82025 3.88521 3.98803 4.06701 4.16400 4.22880 4.37082 4.40268 4.50451 4.56948 4.61834 4.62628 4.68950 4.73386 4.81375 4.83554 4.90293 4.93323 4.99235 5.02466 5.05373 5.12779 5.16782 5.21075 5.22495 5.31328 5.37208 5.39459 5.51466 5.67002 6.28856 6.52446 6.83769 7.07900 7.66589 8.36252 9.02196 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.003967 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.785210 B = 7056.399935 C = 7296.228890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.099 4.099 4 H 0.119 0.881 5 C -0.149 4.149 6 C 0.526 3.474 7 O -0.590 6.590 8 N -0.611 5.611 9 C 0.113 3.887 10 C -0.097 4.097 11 H 0.104 0.896 12 C 0.128 3.872 13 N -0.623 5.623 14 C -0.332 4.332 15 H 0.065 0.935 16 C -0.081 4.081 17 N -0.951 5.951 18 Si 1.118 2.882 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.279 1.279 22 C 0.158 3.842 23 C -0.079 4.079 24 C -0.113 4.113 25 C 0.120 3.880 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.029 0.971 37 H 0.058 0.942 38 H 0.253 0.747 39 H 0.029 0.971 40 H 0.009 0.991 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.576 -8.263 -2.653 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.120 4.120 4 H 0.137 0.863 5 C -0.206 4.206 6 C 0.317 3.683 7 O -0.471 6.471 8 N -0.343 5.343 9 C -0.009 4.009 10 C -0.118 4.118 11 H 0.122 0.878 12 C 0.003 3.997 13 N -0.348 5.348 14 C -0.460 4.460 15 H 0.082 0.918 16 C -0.277 4.277 17 N -0.594 5.594 18 Si 0.942 3.058 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.205 1.205 22 C 0.031 3.969 23 C -0.082 4.082 24 C -0.170 4.170 25 C -0.003 4.003 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.728 -8.174 -2.932 18.848 hybrid contribution -0.676 -0.587 0.629 1.094 sum -17.404 -8.761 -2.303 19.620 Atomic orbital electron populations 1.21805 0.93078 1.02525 1.02972 1.21322 0.97238 0.93732 1.01898 1.21371 0.88192 0.99979 1.02413 0.86284 1.21977 1.03768 1.00698 0.94183 1.21238 0.91340 0.81174 0.74542 1.90663 1.71651 1.32214 1.52562 1.48676 1.07267 1.06665 1.71704 1.22416 0.98232 0.79709 1.00586 1.23015 0.93868 0.94897 0.99973 0.87770 1.22050 0.85393 0.96144 0.96093 1.45383 1.04227 1.01325 1.83820 1.20018 0.94124 0.89721 1.42132 0.91768 1.27210 0.96948 1.04729 0.98767 1.70894 1.39129 1.24569 1.24769 0.82817 0.74323 0.73330 0.75350 1.19811 1.22117 1.20539 1.21578 0.95204 0.85046 0.95038 1.22147 0.96431 0.93313 0.96290 1.21507 1.00947 1.01204 0.93349 1.21951 0.82084 0.96879 0.99407 0.92139 0.91199 0.91622 0.92923 0.92927 0.88627 0.93400 0.91060 0.90380 0.86823 0.95335 0.92311 0.93734 0.95201 0.97348 0.93163 0.93084 0.91281 0.92667 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 71.98 0.70 -1.05 16 2 C -0.10 -1.92 4.75 30.60 0.15 -1.78 16 3 C -0.10 -1.81 2.04 -11.54 -0.02 -1.84 16 4 H 0.12 1.67 7.86 -2.39 -0.02 1.65 16 5 C -0.15 -2.19 8.72 71.98 0.63 -1.56 16 6 C 0.53 14.79 7.24 87.66 0.63 15.43 16 7 O -0.59 -21.64 16.15 -3.04 -0.05 -21.69 16 8 N -0.61 -16.99 3.31 -815.42 -2.70 -19.69 16 9 C 0.11 2.58 4.75 86.50 0.41 2.99 16 10 C -0.10 -2.87 3.73 -9.28 -0.03 -2.90 16 11 H 0.10 2.79 7.95 -2.39 -0.02 2.77 16 12 C 0.13 4.79 6.76 86.52 0.59 5.37 16 13 N -0.62 -30.54 3.22 -687.68 -2.21 -32.75 16 14 C -0.33 -18.32 10.22 84.03 0.86 -17.46 16 15 H 0.06 3.47 7.93 -2.91 -0.02 3.45 16 16 C -0.08 -4.62 5.14 84.86 0.44 -4.19 16 17 N -0.95 -58.71 12.77 21.65 0.28 -58.43 16 18 Si 1.12 50.73 29.98 68.60 2.06 52.79 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 C 0.16 7.25 4.32 86.39 0.37 7.62 16 23 C -0.08 -2.76 1.07 -50.81 -0.05 -2.81 16 24 C -0.11 -3.68 8.60 71.98 0.62 -3.06 16 25 C 0.12 3.99 6.21 86.49 0.54 4.53 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.68 6.57 -2.39 -0.02 0.66 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 1.14 7.95 -2.39 -0.02 1.13 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 0.93 6.57 -2.38 -0.02 0.91 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.01 5.16 -2.39 -0.01 0.99 16 34 H 0.08 1.76 6.51 -2.38 -0.02 1.75 16 35 H 0.11 1.76 6.90 -2.39 -0.02 1.74 16 36 H 0.03 1.06 7.17 -2.39 -0.02 1.04 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.25 15.87 6.44 -92.71 -0.60 15.27 16 39 H 0.03 1.56 7.15 -2.38 -0.02 1.55 16 40 H 0.01 0.43 6.80 -2.39 -0.02 0.41 16 41 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 1.97 7.10 -2.39 -0.02 1.96 16 45 H 0.07 2.37 7.61 -2.38 -0.02 2.35 16 Total: -1.00 -71.54 340.78 4.31 -67.23 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.13 Total: 13.28 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.81 Total: -0.73 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -4.64 Total: -110.87 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.06 Total: 52.79 kcal Total: -71.54 4.31 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091497458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.865 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds